mRNA_H-paniculata_contig30177.8184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30177.8184.1
Unique NamemRNA_H-paniculata_contig30177.8184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMVE 174
            RD +AR EDES GYVMS YVMIR+ARK PS+RD LEGCGNPLP LVQQHAEDI+ +VE
Sbjct:  529 RDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVE 586
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.090e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RD +AREEDES GYVMS Y+M+R+AR  P++ D L  C  PLP LVQQ ++++++++
Sbjct:  291 RDALAREEDESPGYVMSAYLMLRLARAAPASHDALVRCAAPLPPLVQQRSDEVIALL 347
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A816G701_9BILA (Hypothetical protein (Fragment) n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A816G701_9BILA)

HSP 1 Score: 64.7 bits (156), Expect = 3.790e-12
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMVE 174
            RD++AR EDES GYV+  Y+++RI+  LP T + +  C NP P+LV+Q+  DI  +V+
Sbjct:   35 RDKLARTEDESTGYVLPNYMLLRISEMLPKTAEDIRACCNPTPILVRQNLHDIYQIVQ 92
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A8I6S4W1_CIMLE (HRDC domain-containing protein n=2 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6S4W1_CIMLE)

HSP 1 Score: 60.5 bits (145), Expect = 3.090e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RD +AREEDES GYV+S ++M+++A+ LP     +  C NP+P LV+QHA DI  ++
Sbjct:  470 RDNVAREEDESPGYVLSNHMMMQMAQTLPREVQGILACCNPIPPLVRQHAVDIHKII 526
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A8I6S2B5_CIMLE (HRDC domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6S2B5_CIMLE)

HSP 1 Score: 60.5 bits (145), Expect = 3.100e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RD +AREEDES GYV+S ++M+++A+ LP     +  C NP+P LV+QHA DI  ++
Sbjct:  470 RDNVAREEDESPGYVLSNHMMMQMAQTLPREVQGILACCNPIPPLVRQHAVDIHKII 526
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: UPI001AAC5967 (LOW QUALITY PROTEIN: exosome component 10 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC5967)

HSP 1 Score: 59.3 bits (142), Expect = 7.920e-9
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMVE 174
            RDRMAR+EDES GYV+  ++M++++ +LP     +  C NP+P LV+Q   ++M +++
Sbjct:  506 RDRMARQEDESTGYVLPNHMMLKVSEELPREPQGIMACCNPVPPLVRQQINELMLLIQ 563
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A815XFN5_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815XFN5_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 1.400e-8
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RDR+AR+EDES GYV+  +++++I+  LP     +  C NP+P+LVQ +  DI  ++
Sbjct:   38 RDRIARQEDESTGYVLPNHMLLQISEILPREPQGVRACCNPVPLLVQHNLHDIHQII 94
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: UPI001899C31E (exosome component 10 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI001899C31E)

HSP 1 Score: 58.5 bits (140), Expect = 1.480e-8
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMVE 174
            RD++AR+EDES+GYV+  ++MI+I+ +LP     +  C NP+P LV+Q   ++  +V+
Sbjct:  517 RDKLARQEDESIGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQVNELHLLVQ 574
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A815GUC3_9BILA (Hypothetical protein (Fragment) n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815GUC3_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-8
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RD++AR+EDES GYV+  +++++I+  LP     +  C NP+PVLVQQ+  DI  ++
Sbjct:   90 RDKLARQEDESTGYVLPNHMLLQISDILPREAQGIRACCNPVPVLVQQNLHDIHQII 146
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BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Match: A0A819ZBN2_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819ZBN2_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 RDRMAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDIMSMV 171
            RDR+AR EDES GYV+  +++++IA  LP     +  C NP+PVLVQ +  DI  ++
Sbjct:  152 RDRIARHEDESTGYVLPNHMLLQIAEILPRESQGIRACCNPVPVLVQHNLHDIHQII 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30177.8184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI1.060e-2177.59HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA3.090e-1252.63Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A816G701_9BILA3.790e-1246.55Hypothetical protein (Fragment) n=1 Tax=Didymodact... [more]
A0A8I6S4W1_CIMLE3.090e-949.12HRDC domain-containing protein n=2 Tax=Cimex lectu... [more]
A0A8I6S2B5_CIMLE3.100e-949.12HRDC domain-containing protein n=1 Tax=Cimex lectu... [more]
UPI001AAC59677.920e-941.38LOW QUALITY PROTEIN: exosome component 10 n=1 Tax=... [more]
A0A815XFN5_9BILA1.400e-842.11Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
UPI001899C31E1.480e-841.38exosome component 10 n=1 Tax=Nematolebias whitei T... [more]
A0A815GUC3_9BILA2.000e-843.86Hypothetical protein (Fragment) n=1 Tax=Didymodact... [more]
A0A819ZBN2_9BILA2.010e-845.61Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30177contigH-paniculata_contig30177:1968..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue6.9e-17
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons1
Model size174
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.0460837-UTR-H-paniculata_contig30177:1967..19761622929926.0460837-UTR-H-paniculata_contig30177:1967..1976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30177 1968..1976 +
1691481072.4454834-UTR-H-paniculata_contig30177:1967..19761691481072.4454834-UTR-H-paniculata_contig30177:1967..1976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30177 1968..1976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.05751-CDS-H-paniculata_contig30177:1976..21411622929926.05751-CDS-H-paniculata_contig30177:1976..2141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30177 1977..2141 +
1691481072.4624617-CDS-H-paniculata_contig30177:1976..21411691481072.4624617-CDS-H-paniculata_contig30177:1976..2141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30177 1977..2141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30177.8184.1prot_H-paniculata_contig30177.8184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30177 1977..2141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30177.8184.1

>prot_H-paniculata_contig30177.8184.1 ID=prot_H-paniculata_contig30177.8184.1|Name=mRNA_H-paniculata_contig30177.8184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MAREEDESLGYVMSVYVMIRIARKLPSTRDHLEGCGNPLPVLVQQHAEDI
MSMVE
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mRNA from alignment at H-paniculata_contig30177:1968..2141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30177.8184.1 ID=mRNA_H-paniculata_contig30177.8184.1|Name=mRNA_H-paniculata_contig30177.8184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig30177:1968..2141+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATCGTATGGCGCGCGAGGAAGACGAGTCGCTAGGATACGTCATGTC
CGTGTACGTGATGATCCGCATAGCGAGGAAACTACCATCGACCCGTGACC
ATCTGGAAGGGTGCGGCAACCCGCTTCCGGTCCTGGTGCAACAACACGCC
GAAGATATCATGTCCATGGTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig30177:1968..2141+

>mRNA_H-paniculata_contig30177.8184.1 ID=mRNA_H-paniculata_contig30177.8184.1|Name=mRNA_H-paniculata_contig30177.8184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig30177:1968..2141+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGCGAGGAAGACGAGTCGCTAGGATACGTCATGTCCGTGTACGT
GATGATCCGCATAGCGAGGAAACTACCATCGACCCGTGACCATCTGGAAG
GGTGCGGCAACCCGCTTCCGGTCCTGGTGCAACAACACGCCGAAGATATC
ATGTCCATGGTTGAGATGGCGCGCGAGGAAGACGAGTCGCTAGGATACGT
CATGTCCGTGTACGTGATGATCCGCATAGCGAGGAAACTACCATCGACCC
GTGACCATCTGGAAGGGTGCGGCAACCCGCTTCCGGTCCTGGTGCAACAA
CACGCCGAAGATATCATGTCCATGGTTGAG
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