mRNA_H-paniculata_contig30177.8183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30177.8183.1
Unique NamemRNA_H-paniculata_contig30177.8183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.370e-26
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   43 DRLRGDLERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQG-NGVAEEFGEVSRRVMAALWEWR 255
            D L  DLERSGGDVAVKAVLDASREICLRR+EKP F E+GW+ VL+RQG NGV ++FG+V RRV++ALW WR
Sbjct:  458 DMLLIDLERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVLDDFGDVPRRVLSALWSWR 529          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.720e-19
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 RYAQSDTHYLLHIYDRLRGDLERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            +YAQ+DTHYLLH+YDRLR  L   G   A+  VL++SRE+CL+RYEK  F   GW  VL+R G   A       +  MAALW+WR
Sbjct:  210 KYAQADTHYLLHVYDRLRAML---GTPEAIAQVLESSRELCLQRYEKEAFDPEGWRRVLQRIGGEGAGALDSAQQARMAALWDWR 291          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A7S1KUD1_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KUD1_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 2.130e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    4 YAQSDTHYLLHIYDRLRGDL-ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            YA++DTH+LL+IYDRLR D+ ++  G   + +VL+ SR+IC+RRYEK V+ E  +  + R+   G+ EE   + R     L++WR
Sbjct:  416 YARADTHFLLYIYDRLRNDIFDQKNGKEGLISVLEKSRQICMRRYEKFVYDESSYLYLRRKFPQGITEEEDNILRE----LFKWR 496          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A7R9U4W7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4W7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.580e-11
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 RYAQSDTHYLLHIYDRLRGDLERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLR--RQGNGVAEEFG------EVSRRVMAALWEWR 255
            RYA SDT YLL IY +LR +L   G   AV+AVL+AS+E+ LRRYE   F   G+  VL   R   G A +        ++  + +AALW+WR
Sbjct:  108 RYALSDTFYLLDIYAQLRIELHAKGSASAVQAVLEASKEVALRRYEHERFNASGYLGVLSKIRPPAGSAPKSPSDRLDWDLQEKCLAALWDWR 200          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: T1K578_TETUR (HRDC domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K578_TETUR)

HSP 1 Score: 66.6 bits (161), Expect = 6.510e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    4 YAQSDTHYLLHIYDRLRGDL-ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRR 183
            YA+ DTHYLL+IYD +R +L ++      +K V DASRE+CL++YEKP+F   G+  +L+R
Sbjct:  392 YAREDTHYLLYIYDTMRKELLDKDPSGKLIKQVFDASREVCLKKYEKPLFKPEGFNMILKR 452          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A7S1XR06_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR06_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.610e-11
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    4 YAQSDTHYLLHIYDRLRGDLERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            YA + TH+LL  YDR+R +L   G   AV++V++AS+E+ LRRYE   F   G+  +L++          +   R ++ALW+WR
Sbjct:  352 YAAACTHHLLFAYDRMREELHARGSASAVQSVMEASKEVALRRYEHERFNPHGYKPLLKKLPAPATPAEKDWQERSLSALWDWR 435          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A4W4GXN1_ELEEL (Exosome component 10 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GXN1_ELEEL)

HSP 1 Score: 66.2 bits (160), Expect = 8.870e-11
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 RYAQSDTHYLLHIYDRLRGDL--ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            +YAQ+DTHYLL++YDRLR DL    +G    V+ V   S+++CL++Y KP+F E  +  + R+Q     + F          L+ WR
Sbjct:  430 QYAQADTHYLLYVYDRLRADLFDAANGQPSLVQVVWSKSKDLCLKKYVKPIFTEDSYMELYRKQ----KKSFNSQQLMAFRLLYSWR 512          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A4W4GRF9_ELEEL (Exosome component 10 n=9 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GRF9_ELEEL)

HSP 1 Score: 66.2 bits (160), Expect = 9.000e-11
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 RYAQSDTHYLLHIYDRLRGDL--ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            +YAQ+DTHYLL++YDRLR DL    +G    V+ V   S+++CL++Y KP+F E  +  + R+Q     + F          L+ WR
Sbjct:  427 QYAQADTHYLLYVYDRLRADLFDAANGQPSLVQVVWSKSKDLCLKKYVKPIFTEDSYMELYRKQ----KKSFNSQQLMAFRLLYSWR 509          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: A0A8B9KST4_ASTMX (Exosome component 10 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KST4_ASTMX)

HSP 1 Score: 65.9 bits (159), Expect = 1.210e-10
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    4 YAQSDTHYLLHIYDRLRGDL--ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            YAQ+DTHYLL++YDRLR DL    +G    +  V   S+++CL++Y KP+F E  +  + RRQ     + F          L+ WR
Sbjct:  411 YAQADTHYLLYVYDRLRADLCDAANGQSNLIHLVWSKSKDLCLKKYVKPIFTEESYMELYRRQ----KKSFNSQQLAAFRLLYAWR 492          
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Match: UPI001FEEBAED (exosome component 10 isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEEBAED)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-10
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 RYAQSDTHYLLHIYDRLRGDL--ERSGGDVAVKAVLDASREICLRRYEKPVFLERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR 255
            +YAQ+DTHYLL++YDRLR DL    +G    ++ V   S+++CL++Y KP+F E  +  + +RQ     + F          L+ WR
Sbjct:  436 QYAQADTHYLLYVYDRLRADLFDATNGQPALIQLVWSKSKDLCLKKYLKPIFTEESYMELYKRQ----KKSFNSQQITAFRLLYAWR 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30177.8183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI1.370e-2673.61HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA6.720e-1951.76Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A7S1KUD1_9EUKA2.130e-1242.35Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7R9U4W7_9STRA2.580e-1144.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
T1K578_TETUR6.510e-1149.18HRDC domain-containing protein n=1 Tax=Tetranychus... [more]
A0A7S1XR06_9STRA6.610e-1138.10Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A4W4GXN1_ELEEL8.870e-1137.93Exosome component 10 n=1 Tax=Electrophorus electri... [more]
A0A4W4GRF9_ELEEL9.000e-1137.93Exosome component 10 n=9 Tax=Electrophorus electri... [more]
A0A8B9KST4_ASTMX1.210e-1038.37Exosome component 10 n=6 Tax=Astyanax mexicanus Ta... [more]
UPI001FEEBAED1.230e-1036.78exosome component 10 isoform X1 n=2 Tax=Tachysurus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30177contigH-paniculata_contig30177:647..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.003306-CDS-H-paniculata_contig30177:646..9041622929926.003306-CDS-H-paniculata_contig30177:646..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30177 647..904 +
1691481072.4266713-CDS-H-paniculata_contig30177:646..9041691481072.4266713-CDS-H-paniculata_contig30177:646..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30177 647..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30177.8183.1prot_H-paniculata_contig30177.8183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30177 647..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30177.8183.1

>prot_H-paniculata_contig30177.8183.1 ID=prot_H-paniculata_contig30177.8183.1|Name=mRNA_H-paniculata_contig30177.8183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
RYAQSDTHYLLHIYDRLRGDLERSGGDVAVKAVLDASREICLRRYEKPVF
LERGWAAVLRRQGNGVAEEFGEVSRRVMAALWEWR*
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mRNA from alignment at H-paniculata_contig30177:647..904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30177.8183.1 ID=mRNA_H-paniculata_contig30177.8183.1|Name=mRNA_H-paniculata_contig30177.8183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig30177:647..904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACGCTCAGTCGGACACACACTACCTCCTGCACATTTACGACCGACT GAGGGGCGACCTGGAGCGCAGCGGCGGCGATGTGGCGGTCAAAGCCGTTC TTGACGCTTCTCGAGAGATCTGTCTCAGGCGCTATGAGAAGCCGGTTTTC CTGGAGAGGGGTTGGGCGGCGGTGCTCCGCCGACAGGGAAACGGGGTCGC GGAAGAGTTTGGCGAGGTGTCCAGGAGAGTCATGGCTGCCTTGTGGGAAT GGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig30177:647..904+

>mRNA_H-paniculata_contig30177.8183.1 ID=mRNA_H-paniculata_contig30177.8183.1|Name=mRNA_H-paniculata_contig30177.8183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig30177:647..904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACGCTCAGTCGGACACACACTACCTCCTGCACATTTACGACCGACT
GAGGGGCGACCTGGAGCGCAGCGGCGGCGATGTGGCGGTCAAAGCCGTTC
TTGACGCTTCTCGAGAGATCTGTCTCAGGCGCTATGAGAAGCCGGTTTTC
CTGGAGAGGGGTTGGGCGGCGGTGCTCCGCCGACAGGGAAACGGGGTCGC
GGAAGAGTTTGGCGAGGTGTCCAGGAGAGTCATGGCTGCCTTGTGGGAAT
GGAGGTAAAGGTACGCTCAGTCGGACACACACTACCTCCTGCACATTTAC
GACCGACTGAGGGGCGACCTGGAGCGCAGCGGCGGCGATGTGGCGGTCAA
AGCCGTTCTTGACGCTTCTCGAGAGATCTGTCTCAGGCGCTATGAGAAGC
CGGTTTTCCTGGAGAGGGGTTGGGCGGCGGTGCTCCGCCGACAGGGAAAC
GGGGTCGCGGAAGAGTTTGGCGAGGTGTCCAGGAGAGTCATGGCTGCCTT
GTGGGAATGGAGGTAA
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