mRNA_H-paniculata_contig1128.818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1128.818.1
Unique NamemRNA_H-paniculata_contig1128.818.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 1.570e-102
Identity = 189/267 (70.79%), Postives = 211/267 (79.03%), Query Frame = 1 
Query:   79 MRAVSSLVSLSALASSSAFVTPG-YVVRGARG----CATLRSLYRGQHASS--SFAAVRRSAMVRISTARMMSDTTTPVASEAETEVEEALA---GELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSIS 849
            MRAVSSLVSLSALA+SSAFV PG   +R + G       LR L R +  SS    AA+RR   VR  T  MMSD        A TE E A A   GELTELARLEIR+GKI+EI+RHP+ADSLYVEK+D+G+GEEEGPRTIVSGLVNFCEESDLLG+DVVVLCNLKPVNMKGV SAGM+LCSS+EDH+KVEPLC P GVP GELVTF+GH  SPV+AGNRAGKAWK+ SKTL V++ + A FTGEKLPATFMTSKGPITS LPGSIS
Sbjct:    1 MRAVSSLVSLSALATSSAFVAPGGNAIRASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTAVR--TMMMMSDA-------AVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 244 bits (622), Expect = 9.630e-73
Identity = 148/257 (57.59%), Postives = 177/257 (68.87%), Query Frame = 1 
Query:   79 MRAVSSLVSLSALASSSAFVTPGYVVRGARGCATLRSLYRGQHASSSFAAVRRSAMVRISTARMMSDTTTPVASEAETEVEEALAGELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSIS 849
            M+    + +LSALA +SAF  P  V R A   A  RS Y  QH  +   +V +   +++ST     +     A  A      A  G+LTELARLE+RVG+I+EI RHP+AD LYVEKID+GE    GPRTIVSGLV +C E+DLL +DVV+L NLKPVNM+GV SAGMVLCSS+ DHT+V PL  P G P GELVTFEGH  +PVEAGNRA KAWKKV+KT+ V ED VA FT E LPA F TSKG +TS LPG+IS
Sbjct:    1 MQLSRQVFALSALAGASAFA-PAAVSRAAM--ARGRSCYHVQHHLAR--SVNKGWAMQMSTEASTEEGAAAAAEPA------APVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIGEPA--GPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 206 bits (523), Expect = 8.420e-57
Identity = 112/178 (62.92%), Postives = 137/178 (76.97%), Query Frame = 1 
Query:  316 VEEALAGELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSIS 849
            V EA  GELTEL+RLEIR GKILEISRHPEAD LYVEKID+GE +  GPRTIVSGLV +  E +LLG++VVVL NLKP  +KG+ S GM+LC+S+EDHT V+PL  P GV  GEL+TFEGH  +P   GNRAGKA+ +V++ L   ED +AT+ G  +P  FMTSKGP+T+ + GSIS
Sbjct:  189 VVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEAD--GPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.320e-53
Identity = 104/171 (60.82%), Postives = 125/171 (73.10%), Query Frame = 1 
Query:  337 ELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSIS 849
            ELTEL+RLEIRVGKI+E+ RHPEAD LYVEKID+GE    GPRTIVSGLV FC    LL  +V+VLCNLKP  +KG+ S GMVLC++S+D TKV+PL  P   P G+L+TFEGH   PVE GNRA KA+ K++    VNE  VAT+ G  +P  F T  GP+TS+L G IS
Sbjct:   51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPT--GPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNG--IP--FSTPNGPVTSTLIGKIS 215
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.470e-52
Identity = 104/159 (65.41%), Postives = 121/159 (76.10%), Query Frame = 1 
Query:  358 LEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSL 834
            LEIRVGKILEI +HPEADSLYVEK+D+GE    GPRTIVSGLV FC    LL +DVVVLCNLKP   KG+ S GM+LCSS++   KVEPL  PAGVPAGELV+FEGH   P E GNRA KA+ KVS   VV++  +AT+ G  +P  FMTSKGPITS++
Sbjct:   77 LEIRVGKILEIGKHPEADSLYVEKVDLGESS--GPRTIVSGLVEFCTAEYLLNRDVVVLCNLKPRAFKGINSQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKG--IP--FMTSKGPITSTI 229
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.070e-48
Identity = 98/176 (55.68%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:  319 EEALAGELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSI 846
            E A  GE+TEL+RLEIRVGKILE++ HP  + ++VEKIDVGE E   PRTI SGL ++ +E DLL KD +VLCNLKP ++ GV S GMVLC+S  +HT V+ +  PAGV AGELVTF+GH  +PV+AGNRA KA+KKV+     ++   A FTGE   ++F TS GP TS +   +
Sbjct:   66 EVAPVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVGEDE---PRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPA-SSFQTSSGPCTSPISNGV 237
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 176 bits (445), Expect = 3.230e-47
Identity = 95/172 (55.23%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:  340 LTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITS--SLPGSIS 849
            LTEL+RLEIRVGK++E  RHP+AD+LYVEK+DVGE E   PRTIVSGLVNF  + +L G+ V+VLCNLKP  M+G+ S GM+LC+S+EDHTKV+PL +P     G L+TFEGH  +P++AGNRA KA+ KV+     + D +A F        FMT  G   S   L GS+S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDE---PRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATP----FMTEAGACYSPAKLQGSVS 232
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 4.740e-47
Identity = 100/172 (58.14%), Postives = 125/172 (72.67%), Query Frame = 1 
Query:  340 LTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSS--LPGSIS 849
            LTEL+RLEIRVGKI+E  +HP+AD+LYVEK+DVGE E   PRTIVSGLV +     ++G+ VVVLCNLKP  M+GV S GM+LC+S+EDHT V+PLC+P   P GELVTFEGH  +P++  NRA KA+ +V+  L  NE  VA F  E +P  F TS GP  S+  + GSIS
Sbjct:  115 LTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEE---PRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMF--EDVP--FSTSAGPCFSAENVIGSIS 279
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.750e-47
Identity = 102/187 (54.55%), Postives = 130/187 (69.52%), Query Frame = 1 
Query:  289 PVASEAETEVEEALAGELTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITSSLPGSIS 849
            PV ++A+ E   A AGEL E +RLEIRVGKI+++S HP+AD LYVEKID GE E   PRTIVSGLV + +  DLL + VVVL NLKP  M+G+ S GM+LC+S+EDH++V PL  P     GEL+T EG    P+E  NRA KA+ KV+K L VN+D  ATF G+     F+T  GP TS++ G+IS
Sbjct:   67 PVDTDAKEEAA-APAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDE---PRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKP----FLTPNGPCTSTMKGAIS 245
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BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 173 bits (439), Expect = 4.800e-46
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:  340 LTELARLEIRVGKILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVVVLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGHARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITS 828
            LTEL+RLEIRVGKI++  +HPEADSLYVE++DVG+  E G R IVSGLV+F    +++ + V+VLCNLKP NM+G+ S GM+LC+S+EDH++V+PL +P GVP G LVTFEGH   P  AGNRA KA+ KV+K+L  +   VA F  E++P  F T  GP  S
Sbjct:   92 LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGD--ESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMF--EQVP--FATPSGPCFS 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1128.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI1.570e-10270.79Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA9.630e-7357.59Endothelial monocyte-activating polypeptide II pro... [more]
W7U6C4_9STRA8.420e-5762.92Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S0XDL6_9STRA1.320e-5360.82Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3M138_9STRA3.470e-5265.41Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S2R5F0_9STRA1.070e-4855.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ZE83_9RHOD3.230e-4755.23Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A2V3IUX7_9FLOR4.740e-4758.14Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S2V4I0_9STRA4.750e-4754.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5J4Z2W6_PORPP4.800e-4657.06Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1128contigH-paniculata_contig1128:2790..8627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.0
Seed ortholog evalue7.8e-87
Seed eggNOG ortholog2880.D7FMW6
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorychloroplast
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-09_002760.1
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons6
Model size1967
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1128.818.1prot_H-paniculata_contig1128.818.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1128 3905..8549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.2185726-UTR-H-paniculata_contig1128:2789..39041622928831.2185726-UTR-H-paniculata_contig1128:2789..3904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1128 2790..3904 -
1691480637.9647746-UTR-H-paniculata_contig1128:2789..39041691480637.9647746-UTR-H-paniculata_contig1128:2789..3904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1128 2790..3904 -
1622928831.330642-UTR-H-paniculata_contig1128:8549..86271622928831.330642-UTR-H-paniculata_contig1128:8549..8627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1128 8550..8627 -
1691480638.0330226-UTR-H-paniculata_contig1128:8549..86271691480638.0330226-UTR-H-paniculata_contig1128:8549..8627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1128 8550..8627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.2326176-CDS-H-paniculata_contig1128:3904..39941622928831.2326176-CDS-H-paniculata_contig1128:3904..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 3905..3994 -
1691480637.9780183-CDS-H-paniculata_contig1128:3904..39941691480637.9780183-CDS-H-paniculata_contig1128:3904..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 3905..3994 -
1622928831.249334-CDS-H-paniculata_contig1128:4726..49271622928831.249334-CDS-H-paniculata_contig1128:4726..4927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 4727..4927 -
1691480637.9869123-CDS-H-paniculata_contig1128:4726..49271691480637.9869123-CDS-H-paniculata_contig1128:4726..4927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 4727..4927 -
1622928831.2692814-CDS-H-paniculata_contig1128:5349..55231622928831.2692814-CDS-H-paniculata_contig1128:5349..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 5350..5523 -
1691480637.9964855-CDS-H-paniculata_contig1128:5349..55231691480637.9964855-CDS-H-paniculata_contig1128:5349..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 5350..5523 -
1622928831.2843413-CDS-H-paniculata_contig1128:5753..58791622928831.2843413-CDS-H-paniculata_contig1128:5753..5879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 5754..5879 -
1691480638.005517-CDS-H-paniculata_contig1128:5753..58791691480638.005517-CDS-H-paniculata_contig1128:5753..5879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 5754..5879 -
1622928831.2967346-CDS-H-paniculata_contig1128:6411..65271622928831.2967346-CDS-H-paniculata_contig1128:6411..6527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 6412..6527 -
1691480638.0149128-CDS-H-paniculata_contig1128:6411..65271691480638.0149128-CDS-H-paniculata_contig1128:6411..6527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 6412..6527 -
1622928831.3124125-CDS-H-paniculata_contig1128:8482..85491622928831.3124125-CDS-H-paniculata_contig1128:8482..8549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 8483..8549 -
1691480638.0239546-CDS-H-paniculata_contig1128:8482..85491691480638.0239546-CDS-H-paniculata_contig1128:8482..8549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1128 8483..8549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1128.818.1

>prot_H-paniculata_contig1128.818.1 ID=prot_H-paniculata_contig1128.818.1|Name=mRNA_H-paniculata_contig1128.818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MRAVSSLVSLSALASSSAFVTPGYVVRGARGCATLRSLYRGQHASSSFAA
VRRSAMVRISTARMMSDTTTPVASEAETEVEEALAGELTELARLEIRVGK
ILEISRHPEADSLYVEKIDVGEGEEEGPRTIVSGLVNFCEESDLLGKDVV
VLCNLKPVNMKGVLSAGMVLCSSSEDHTKVEPLCSPAGVPAGELVTFEGH
ARSPVEAGNRAGKAWKKVSKTLVVNEDKVATFTGEKLPATFMTSKGPITS
SLPGSIS*
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mRNA from alignment at H-paniculata_contig1128:2790..8627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1128.818.1 ID=mRNA_H-paniculata_contig1128.818.1|Name=mRNA_H-paniculata_contig1128.818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5838bp|location=Sequence derived from alignment at H-paniculata_contig1128:2790..8627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCACATCAGTAAATAGCGTAGCTTGTCTCTGCAAAACTTGCTACCCGT
ACTTGACCGTAGAACACTACACTACATTATGCGTGCTGTGTCGTCTTTGG
TGTCCCTGTCAGCGCTGGCGAGCTCGTCGGCTTTCGTCACGCCAGGTGCT
GTTTATTCCCAAAGAGGATTTCAAGATATGTTCGCTACACTGTTGTGTGT
CGTGTATAAACGTGCATGTATCGAGGAGGCTTTTAGTGCTGCATACAGGA
TAGTGGAAAGCGAGCTGTAGAAGAACAGCAATACCCCTATATCGACTTTA
CTCGAAGCAGGGATGGTTTTTATGGCCATTTTGAAGACTGCTATTAATAC
ATACATTATAATACCACACAGGGCTCAGCATTGCATCACTCCACACCTAT
CTCCAACGTTGAACGTTGGTACTTTAATGACTTGGATATATACATGAATG
ACGCACAGGGAGAACACACCGCACGAACAGTTGTGCCATTCAGCTGGCAA
CACCTACGCGTCGACACAGAAGTGGAGGAACCCTCGATAGTAGTTATACG
ATAGATCGTCCTCGTCGTCGTTGTTTCAAAATATTTGAACACTGTAATAA
AGTAACTTCAAGATAAGAATCTTGGACATCTTGCAAGTGCACCAAGCCAC
GCGAGCGCAGCGTTGTGCATGAATCGAGGATAAGGCACCACCTGCACGAT
CATAATCGTGCCTCCACAGCACATTCTGAAGTGTACTGCTACGTCGGGTT
GTGCCAAACAGTACTGACTGTTCCCCCCCTATGTAACGCCATTTTTGCAC
AGTTCGATTTTTCGCGCGGAAAAAAAGTCCAATTTGCCCTGTGAACACTC
GAAAACTGTTTCAAATTTTGACCAAAAATGGGCTTTTGGGATTTTTCGGG
TTTTATAACCAAGAACTTTTGCTCCGATAATATCGTCACTTTCGGGAGGA
AATGTAGTACTTTTATTTTTTCACCCATCTGCTGGGGGTGGTGGTAGGAG
CGCTTGGCTCGAACAACAAATTACTCGGTTTTTCTTCATCGTTCACATCG
TCGAGGCAACGCGGAGGAAATGTTGTTTTTGGCGGTGGCGAAGATTCGAA
CAATGCAAAAATTGCGGTAGGTATAGGGAATTCGTTTTCGAAAACAACCC
ACTATACTGTCGTTAGATCGTCGTTCGCGGGTAAGGCACACATTTTTTTT
TTGTTGTTTTTGCATATATATTCACCTCCTGTCCCCGTGTGGGGCAGTAC
CATTAGCAAGGGATTGCTGTTGTATTGGAGTGTGTTCTTTTTAAGCCACG
AAGTAGTAGGTGGGTTCGTGGATTTCATGTATTTTTGGCGATAGTAATGA
AAAAGGAGAAAAAAATAGCACACTTACAGTCAGGAGAGTATGTTACGCAA
AATTTGTGTCCTACCTGCGAATATCGTTCTAGCGACAGTTGACTATTGTC
TAAAATTAAGCAGCCCCCCCGATCTACCGTAGTTTCCGCCGTTTTCGAAT
CTTCGCTTGTCTACTTTGTTGTTGTGTTCACTTTCGTCCCCTTTGCGTCG
AGATGTGTATGTGTGTAGAAGAAAAAATGGCTGTAAGGTGTTGTTTTACC
GAATGGTCCCTTTCACCCCCCTGAGTCTATGGGACAAAAATGAAAGACGC
ATGTTTCCCCCCCTAAATCGAAGAAAATATCGCCACAAAAATTCTTCATC
ATGAAACTCTCTAAAGTCTCAAATGTCCATTTTTAGTCGGAAATTGCAAC
ACGTTTTGGAGTTATCACGGGGCAAAATCCAGTTTTTTTCATCGGCGAAA
ATTCGAACTGTGCAAAAATAGAGGTACCTGAGAGGGGGTCCTACTCTGTC
TTATTTATAGTACTCGTAAATGGTATCTTCAGATACCAGTAAACACCAAA
GACAGCAGAATTAGGCGCAGAGAGACGAATTTTCACGACGGTAAAAAATC
AAGACTCAGCTGTCTTTTGTGTTTTCTCTGTGAGTTGCGTTCTCCGCGTA
GGAATGGACTGTTCACCTTTACACCCGTCGTGCATTCCTCAATAGGGACA
CCAAATTTACTTCGGTGCGTTCTCGCTCTTGGCCGAAATCCGTGTTACAG
GGTATGTCGTCCGCGGAGCTCGCGGGTGCGCCACGTTACGATCTCTCTAC
CGTGGACAGCACGCCTCTTCCAGTTTTGCAGCGGTTCGGCGATCAGCGAT
GGTCCGGATATCAACGGTGAGGAGACGCGCTAAGAACACGGACGCAGACC
CTTGATCCTATTTGACGGTTCAAAATTTCTTTTCAAATATGCTATCATTA
TCAGTGTTTCGTGGGTGGAACGTATCGATCGCTTTTCTAGTGCTATTTTT
CGGTGACGGTATGTCACAACTTAGAGGAGGAATCATCCAATTTTTACAAT
AATGCAAGAGCACATTTCCTGTATGGGATAGCATACGCGAAAAATGGCTT
TAGGGTTCCTAAAGTTCCCGTAGTCGCTCCTGTGACGTCTTGGGGGGCAT
CGAGACAAAAGCTCGAAAAGCATATCCCGTCGCAGGCGGTACATGTCATG
ACCTGCGGTATTGACAGTGAACATGAGTGTTGAATTATGCACCCTCTCGT
GTATTACTGTGCTGTACTATGGCTTGTCTTCGGCTCTACCGTGTGTTCAC
GACCAAACGTGTGCTCGGGCTGAGATGCGTCCTTGAAAACCATGATCGAC
AATGTAAACTTTTGGGCTCGCAAATGCACTTGCGGAATCTATCCATAGGC
GAGAATGATGTCGGACACGACAACACCGGTGGCGAGCGAGGCCGAGACTG
AGGTGGAGGAGGCGCTGGCGGGTGAGCTGACGGAGCTAGCAAGGCTTGAA
ATCCGTGTGGGGAAGATCCTGGAGGTGACGGCACACACCGGCGTCAGCTT
TTACTCTGACAAAAAACCAAGTCGTGGGAGTGGCGTAAACGAATTGCGCC
ACGCTTGAATGTTTCGAGCACATTTTTTTCACCAGCCGAGAGTTTAAGGT
ATCTCTCGCTGAATAAGGGCAATTGCCGTGCTACGATTGTGTTGCTCAGT
CGTTTTTCAAGGCTTCTCTTCTTGTCTTGTGGATGGAACGGTGTGAAACG
GCAGATATCTCGGCATCCGGAGGCGGACAGCCTGTACGTGGAGAAGATCG
ACGTTGGCGAGGGGGAAGAGGAAGGACCTCGGACGATCGTATCGGGTCTT
GTAAACTTTTGCGAGGAATCCGACTTGCTAGGGAAGGATGTCGTGGTCTT
GTGCAACCTGAAGCCGGTCAACATGAAGGTAGATAATCGGCAATGCGACA
AGATATCCTTCCCCCTTGCGTAGTCAGGAGACACAAAGGCCCCATGTTTG
AGATCCAACAGTTGATGACAGTTTCAAACCCCACGAGCCCTGTCTACGTA
CACCCCAGTTATGGATGCGCACGTTGCAACGCGGATTTGGACGGGATCGG
GGCACATATTCCCTTGAGTCCTATCGCGTGCTGTGAGACTGTTCTTCACG
TAAAAAATGTAAAAACAAATGTTGAAAGAGAGATAAAGGAGCGCACGTAT
CGACCAAATGTCGTGCACTTTTTTCACATGAGACACCCTAGAAAGATGCA
GTTGGCATGAAAATATCCACTTTCCTGGAAAAGCGGGATTCTCATTGTCC
CGTCCTCCACCCGGCCCCGGGCCCTTCCGGTGGCCTGCCCCATCCTTTAG
GGCGTCTTGTCGGCCGGCATGGTGCTCTGCTCTAGCAGCGAAGACCACAC
TAAGGTGGAGCCCCTGTGCTCGCCTGCGGGTGTTCCAGCCGGCGAGCTGG
TGACGTTCGAGGGGCACGCGCGATCGCCGGTGGAAGCCGGAAATCGAGCG
GGTAAAGCGTGGAAGAAAGTTTCCAAGACTCTGGTGGTTAATGAAGACAA
GGTATTGTATTCAGGCTGAGGATCAGTTTTGGGATAGAACATCAGCATTG
TAAATAACAGGCCAAAGAACAGGGTCCTGTAGTATAACAAATATAGCTCT
AGGGTAGATACATTACAGATCAATCGTCCGTATCATACGAGCGTAGCGAC
GGTTGATATCTGACTCGTTTAGATTTCCAAGATGGGATAAAATCGCAATT
AGTTATTCGTATTCGGTCTGTTAAACCCGATTACATTAGTACTCTAAGGC
GCGATTATTCCCTGAGTGCGATCCGTCGACGTCCATGGGTATATCCTGGT
GAGCTGATAGAGCACGAAGAGAAGGTGTATGTACACATCTGCGAGCGTGA
GGGCGACAACGTTGCGGTAATCATCTCTGTCCAAACGGCCGAGGCATCGT
CTTACTTGATGTCCGTTCGTGTATTCGAGGTAAATAGGACACCGTTAGAA
GGAGCGCAGCACGCTGTTGATCACATTACACGTAGTGTTTGCAGTACTCG
GAATTGTTTCGATCGTACGTACTGACTGCAGAGGTAAATCAGGTCGACAT
ATGTCGTTGTAGACACGACTGCCTATGATCGCCCCGCGATGCAAGGTGGC
TACTTAATAGCCAAACTTACACCTCCTTGCACACCAATATTTTGCGACAT
GACCTTACCGCGTCGAGTGTGTCCGCGTTCGGTTGCCGCTGTTGAATGTG
ACCTAACTTTTGGGGGCGGGGGGATTGGGGCAGGTGGCTACCTTCACGGG
CGAGAAACTCCCGGCAACATTCATGACTTCTAAGGGTCCGATCACCTCAT
CGCTACCAGGCAGTATCTCCTGAGGTAGTGGTTTCAGGTCGATGTCAGCG
AACGCGTGAGGATCATAACATGTGCCACGCTTTCGGAGATGGGATAGCTG
GGTAAACCACAACGACTTGACCACGAAGACCGAGTCCACCGCGGAGGAGG
GTGGGTAGGGTAAAATCATTGTGTGTGGCACCAACAAGTTTATCGTGAAG
GGCTACGGTTGGTTCGAGCTGTGTAAGGAGCTGCTGATGCTCCTTCGTCT
ATCGTATTTTCAAAGTAGTGCAGTAGATGTCGTTTCGTATTACAGGGTAG
GGTGAGTGTTGCTTTTTTTCTGTGGCACGATGTGCTCTCAATCCCTCCCC
ATGTGCCGTCAATGTTGAATAGGACACCCGCTGGTGGCAGAATTGAGTCG
CTCTTGTTTGAATGGGATACCCCCAAGCGTTGTTTTCGTTGATGGCAGTA
TTTTGTTGTTCTCCGGCGGTACTTCTTTCGATGTGGTGAGCAACCTCGTA
GTGGATGCTCCCTCTTTTATCGACAGAAAAGAGGGCACGAGTAGGGATGT
ACCCACCACGGAGAGGGGGTTAACAATACCCTATTGAGAAGTTTTGCCAA
GAGTTGAGAAACTGGAAGCGAAGCAGATCTGTCCTGTGGTGATGACTCAT
GTACAGCACACGTACTAGTTAGAGGTCGGCATCAGGTGGGGACAAAACCG
GGTATGGGGTTTCCGATAATCGGACATCTGGGTTAGGGTATCTGATATTT
GATACAGCAGACAACAACATCGATTGTTCTTTTGCCCGCTGTTGTATCGA
TGATACGGTATTCAAATACAGGATTACTGCGAAGTTCGGATGACCGCAAG
AGGCCTCAAACAGTATTTTGGTGAGATTCAGAGTGTAACTTCACAATCAG
AGTGCGGCCTTAGAAATCACACAGCACTGTCAATTCGAAGAGTTAGACCT
CACGGAGCCGCTTGAATGAAAGCTCCGGCCCATGCGAAGACGGACATAAC
ATTGCAAACGCCCCCGGTTGAAGTATGGTGAAGTTGGGGCGGAAACAGAA
CAATTTCATCCGTTCTGAAAGCTTGAAATCGATTAATCGTCCATGGTGCG
GGTACAAAGTTTGAAGTTACAACAGCTTTTGATCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1128:2790..8627-

>mRNA_H-paniculata_contig1128.818.1 ID=mRNA_H-paniculata_contig1128.818.1|Name=mRNA_H-paniculata_contig1128.818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig1128:2790..8627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGCTGTGTCGTCTTTGGTGTCCCTGTCAGCGCTGGCGAGCTCGTC
GGCTTTCGTCACGCCAGATGCGTGCTGTGTCGTCTTTGGTGTCCCTGTCA
GCGCTGGCGAGCTCGTCGGCTTTCGTCACGCCAGGGTATGTCGTCCGCGG
AGCTCGCGGGTGCGCCACGTTACGATCTCTCTACCGTGGACAGCACGCCT
CTTCCAGTTTTGCAGCGGTTCGGCGATCAGCGATGGTCCGGATATCAACG
GGTATGTCGTCCGCGGAGCTCGCGGGTGCGCCACGTTACGATCTCTCTAC
CGTGGACAGCACGCCTCTTCCAGTTTTGCAGCGGTTCGGCGATCAGCGAT
GGTCCGGATATCAACGGCGAGAATGATGTCGGACACGACAACACCGGTGG
CGAGCGAGGCCGAGACTGAGGTGGAGGAGGCGCTGGCGGGTGAGCTGACG
GAGCTAGCAAGGCTTGAAATCCGTGTGGGGAAGATCCTGGAGGCGAGAAT
GATGTCGGACACGACAACACCGGTGGCGAGCGAGGCCGAGACTGAGGTGG
AGGAGGCGCTGGCGGGTGAGCTGACGGAGCTAGCAAGGCTTGAAATCCGT
GTGGGGAAGATCCTGGAGATATCTCGGCATCCGGAGGCGGACAGCCTGTA
CGTGGAGAAGATCGACGTTGGCGAGGGGGAAGAGGAAGGACCTCGGACGA
TCGTATCGGGTCTTGTAAACTTTTGCGAGGAATCCGACTTGCTAGGGAAG
GATGTCGTGGTCTTGTGCAACCTGAAGCCGGTCAACATGAAGATATCTCG
GCATCCGGAGGCGGACAGCCTGTACGTGGAGAAGATCGACGTTGGCGAGG
GGGAAGAGGAAGGACCTCGGACGATCGTATCGGGTCTTGTAAACTTTTGC
GAGGAATCCGACTTGCTAGGGAAGGATGTCGTGGTCTTGTGCAACCTGAA
GCCGGTCAACATGAAGGGCGTCTTGTCGGCCGGCATGGTGCTCTGCTCTA
GCAGCGAAGACCACACTAAGGTGGAGCCCCTGTGCTCGCCTGCGGGTGTT
CCAGCCGGCGAGCTGGTGACGTTCGAGGGGCACGCGCGATCGCCGGTGGA
AGCCGGAAATCGAGCGGGTAAAGCGTGGAAGAAAGTTTCCAAGACTCTGG
TGGTTAATGAAGACAAGGGCGTCTTGTCGGCCGGCATGGTGCTCTGCTCT
AGCAGCGAAGACCACACTAAGGTGGAGCCCCTGTGCTCGCCTGCGGGTGT
TCCAGCCGGCGAGCTGGTGACGTTCGAGGGGCACGCGCGATCGCCGGTGG
AAGCCGGAAATCGAGCGGGTAAAGCGTGGAAGAAAGTTTCCAAGACTCTG
GTGGTTAATGAAGACAAGGTGGCTACCTTCACGGGCGAGAAACTCCCGGC
AACATTCATGACTTCTAAGGGTCCGATCACCTCATCGCTACCAGGCAGTA
TCTCCTGAGTGGCTACCTTCACGGGCGAGAAACTCCCGGCAACATTCATG
ACTTCTAAGGGTCCGATCACCTCATCGCTACCAGGCAGTATCTCCTGA
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