mRNA_H-paniculata_contig30165.8180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30165.8180.1
Unique NamemRNA_H-paniculata_contig30165.8180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30165.8180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30165contigH-paniculata_contig30165:2047..2867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size821
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30165.8180.1prot_H-paniculata_contig30165.8180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30165 2294..2704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.7667646-UTR-H-paniculata_contig30165:2046..22931622929925.7667646-UTR-H-paniculata_contig30165:2046..2293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30165 2047..2293 +
1691481072.3045912-UTR-H-paniculata_contig30165:2046..22931691481072.3045912-UTR-H-paniculata_contig30165:2046..2293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30165 2047..2293 +
1622929925.804781-UTR-H-paniculata_contig30165:2704..28671622929925.804781-UTR-H-paniculata_contig30165:2704..2867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30165 2705..2867 +
1691481072.320212-UTR-H-paniculata_contig30165:2704..28671691481072.320212-UTR-H-paniculata_contig30165:2704..2867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30165 2705..2867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.7867448-CDS-H-paniculata_contig30165:2293..27041622929925.7867448-CDS-H-paniculata_contig30165:2293..2704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30165 2294..2704 +
1691481072.3126254-CDS-H-paniculata_contig30165:2293..27041691481072.3126254-CDS-H-paniculata_contig30165:2293..2704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30165 2294..2704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30165.8180.1

>prot_H-paniculata_contig30165.8180.1 ID=prot_H-paniculata_contig30165.8180.1|Name=mRNA_H-paniculata_contig30165.8180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MSPSIALIRLASSSRGYIVNGLNNKSGGIQTVNILARYCHYVLFTHAGEL
LSTALTCTLHPVPRTISSPYTKKILLFCTISCIHQQTTPPSPTPSLVLHF
VRFCGISRHSVLLNGMSMFRSSINLLICFVFVLVQV*
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mRNA from alignment at H-paniculata_contig30165:2047..2867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30165.8180.1 ID=mRNA_H-paniculata_contig30165.8180.1|Name=mRNA_H-paniculata_contig30165.8180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig30165:2047..2867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAACGTTATTGTACCCACGTATATCTTGTTTTCCTTTCGTCTTTTCT
GTCTTGTGTCTCTCTCTGTATCTCTTCATTTGTGGTCTGCTGCCACTACC
ACCCCGAGAATGGGGTTGCACAACGAACGCGAGGGCTGGTGGGGGTACAG
GATGTGTATTTTTAGCATCTAACGTGAATCCCTTTTTGAGTTGTTCGGCA
GGCGGAGCAGTAAGGAAGGAGCAACTGATCGATCATCTTGCCATCGGATG
TCACCATCGATTGCTCTTATCAGATTAGCTTCGTCCTCTCGAGGATACAT
CGTCAATGGTCTTAACAACAAAAGCGGGGGCATCCAAACCGTGAATATCC
TCGCCCGCTATTGCCATTACGTTTTATTCACTCATGCTGGCGAATTGTTA
TCCACAGCTTTGACGTGCACCCTGCACCCCGTACCCCGCACCATCTCGAG
TCCATACACGAAGAAGATTTTACTATTTTGCACGATATCTTGTATCCATC
AACAGACAACGCCCCCCTCCCCCACCCCCAGCCTTGTACTACATTTTGTT
CGTTTTTGTGGAATCAGTCGTCACTCAGTACTATTAAATGGAATGAGCAT
GTTTCGAAGTTCGATTAATTTGCTAATTTGCTTTGTATTCGTGCTTGTAC
AGGTTTGATCGCTTCCTCTCGTCCTCCCCCGCCAGCGATGCAGGGGGTTG
ATAGCGACCCGAGGCATGTTCCTCAACATGATTCCATAGTTCCACTCTGT
CGATATGAATCAAGTCATTACGGTCTTATACTTTGGCCAAGTGAAAAAAA
AAACACAAGGACCTACGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig30165:2047..2867+

>mRNA_H-paniculata_contig30165.8180.1 ID=mRNA_H-paniculata_contig30165.8180.1|Name=mRNA_H-paniculata_contig30165.8180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig30165:2047..2867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCATCGATTGCTCTTATCAGATTAGCTTCGTCCTCTCGAGGATA
CATCGTCAATGGTCTTAACAACAAAAGCGGGGGCATCCAAACCGTGAATA
TCCTCGCCCGCTATTGCCATTACGTTTTATTCACTCATGCTGGCGAATTG
TTATCCACAGCTTTGACGTGCACCCTGCACCCCGTACCCCGCACCATCTC
GAGTCCATACACGAAGAAGATTTTACTATTTTGCACGATATCTTGTATCC
ATCAACAGACAACGCCCCCCTCCCCCACCCCCAGCCTTGTACTACATTTT
GTTCGTTTTTGTGGAATCAGTCGTCACTCAGTACTATTAAATGGAATGAG
CATGTTTCGAAGTTCGATTAATTTGCTAATTTGCTTTGTATTCGTGCTTG
TACAGGTTTGAATGTCACCATCGATTGCTCTTATCAGATTAGCTTCGTCC
TCTCGAGGATACATCGTCAATGGTCTTAACAACAAAAGCGGGGGCATCCA
AACCGTGAATATCCTCGCCCGCTATTGCCATTACGTTTTATTCACTCATG
CTGGCGAATTGTTATCCACAGCTTTGACGTGCACCCTGCACCCCGTACCC
CGCACCATCTCGAGTCCATACACGAAGAAGATTTTACTATTTTGCACGAT
ATCTTGTATCCATCAACAGACAACGCCCCCCTCCCCCACCCCCAGCCTTG
TACTACATTTTGTTCGTTTTTGTGGAATCAGTCGTCACTCAGTACTATTA
AATGGAATGAGCATGTTTCGAAGTTCGATTAATTTGCTAATTTGCTTTGT
ATTCGTGCTTGTACAGGTTTGA
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