mRNA_H-paniculata_contig30152.8177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30152.8177.1
Unique NamemRNA_H-paniculata_contig30152.8177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30152.8177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30152contigH-paniculata_contig30152:1010..2689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30152.8177.1prot_H-paniculata_contig30152.8177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30152 1010..2405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.5666723-CDS-H-paniculata_contig30152:1009..12251622929925.5666723-CDS-H-paniculata_contig30152:1009..1225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30152 1010..1225 -
1691481072.2298508-CDS-H-paniculata_contig30152:1009..12251691481072.2298508-CDS-H-paniculata_contig30152:1009..1225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30152 1010..1225 -
1622929925.5798545-CDS-H-paniculata_contig30152:2315..24051622929925.5798545-CDS-H-paniculata_contig30152:2315..2405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30152 2316..2405 -
1691481072.237872-CDS-H-paniculata_contig30152:2315..24051691481072.237872-CDS-H-paniculata_contig30152:2315..2405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30152 2316..2405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.5946329-UTR-H-paniculata_contig30152:2405..26891622929925.5946329-UTR-H-paniculata_contig30152:2405..2689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30152 2406..2689 -
1691481072.245496-UTR-H-paniculata_contig30152:2405..26891691481072.245496-UTR-H-paniculata_contig30152:2405..2689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30152 2406..2689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30152.8177.1

>prot_H-paniculata_contig30152.8177.1 ID=prot_H-paniculata_contig30152.8177.1|Name=mRNA_H-paniculata_contig30152.8177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MHTQRRTFAVERRGLCGADVPANNRHQLQQDLDKLQASVVTGSKLQINHI
FGCVARTSFLINLKNKTTGGFVDAIVKTSLGPFCQTTPRQVQWQGEKFVP
SQ
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mRNA from alignment at H-paniculata_contig30152:1010..2689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30152.8177.1 ID=mRNA_H-paniculata_contig30152.8177.1|Name=mRNA_H-paniculata_contig30152.8177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig30152:1010..2689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGTGTTCAGCTAGATTTGAGATCCGCCTAGGGTACGTGACACTAGCTC
GAAACGATAGAGTGTAGCGTGTTGCGCCACGGCAACGGGTCCGTGTGATC
GAGGTTCTGTGCGGGCGTCCGACATTGTCGGACCCAAAAGGTAACTTGAA
CAGATCCGTCAACAGCCACAAATTGCGCCGTCCCAGTTATTGGTATATGT
CTACTACTGTCGCTGCACGACGTATACAGACGGTGCTCTGCCTGGAGAAC
CACCTTATCCACGTGAACCCCTGCAAAGCACTTTATGCATACGCAACGAC
GGACATTCGCGGTGGAGAGGCGAGGGTTGTGTGGTGCAGATGTTCCAGCA
AACAACCGTCATCAGCTTCAGCAGGTGCGAAACCCTACATCAGCAGGGTA
CCCTAGTGCAGATGGAATGCTTTGTAGCGCGTTCAGCACGTTATTTCTCG
GCTATCACAAGCGATGAGCTCACCTATCGCGGCAAATAAAGCATTCCCTC
TCCCGCAGCATCACCGAGTTGTGAGTGCAGTGTGCGCTGCACCAGTCTCT
CCACTGTGTCACGGTTTATCCACCAACCCCCAAAGGCGTCAAACGATACT
GTAAATATTTGAGTCACGAGCGGGATTTCTTTCTTTCCGTGTTTCATCTA
ACTCCTTTCTTGCTTTTGTCAGGCAATCCAAGAATCACTGAATAGCAGCA
GCACACGACAACGAGGATGGAGTTTGACTGTACTTGATTGGCAAGCATCT
CAGCCGTTGGGTGATGCTTATCAAAAGAAAAGAAACGTTGCACAATTACT
GTAATTGCGAACATCGTACGTAAACCAGTGGTCTATCACAACGTGTTGTA
ATTTGTTGTGTTTCCCCCGCAGTGTCTATGTCTGCAGCAAATTCAGTGTC
ACAACAGCGTACAAAATACATTAATTTAGCACATACATTGCACCCTCGTA
CAGACAGGCATCGTCAGAGCTGTTCATTGTGCAAGTGATGCCAAACTTGG
AACAACTAACAGATAAAGTGCCAAGAGTCCTGACCTCGTATAGTGTTAAC
ATCAAGGAACTGGTGAACCGTGTTTTCCCTCGTGGCATGCAGCGATATAC
AAAGTTGAAACCTCGTTAAAGTGGCGAGATGATACACATCCCATCGACGT
CATCAATCCGCCCACTGACTACGATCATGACGTATTTGGGTTGGAAGGAT
GAACGTGCAAGCAACCACAAATGGTGTCAGAAGGTCCAGACAGTACAGCT
CTCGTGATACCGGTCCGAGGGTCTTCGTGATAGTGGATGGCAGGATCGCC
CTGTACAGGCGATGTGCTGAAAGGCCGAAGAAAGCTGTGTTACCCTACCG
TTTTACTTATGGTCTCTCTTTTTCGTAATCGGTGAAATGATTATGGTATT
GAGGGCCTGTCCCTCCTTACTATCATGATATTTTTAGAAAAATACTCCAA
ACACTGCCCCTCAGGACTTGGACAAACTTCAAGCATCTGTCGTCACCGGA
AGCAAGCTACAGATTAACCACATCTTCGGCTGTGTGGCTCGCACCAGCTT
TCTGATAAACCTGAAGAACAAAACAACGGGGGGATTTGTAGACGCGATCG
TTAAAACATCGCTGGGTCCGTTCTGTCAAACCACACCTCGTCAAGTACAA
TGGCAAGGGGAAAAGTTCGTGCCTTCCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig30152:1010..2689-

>mRNA_H-paniculata_contig30152.8177.1 ID=mRNA_H-paniculata_contig30152.8177.1|Name=mRNA_H-paniculata_contig30152.8177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig30152:1010..2689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACGCAACGACGGACATTCGCGGTGGAGAGGCGAGGGTTGTGTGG
TGCAGATGTTCCAGCAAACAACCGTCATCAGCTTCAGCAGATGCATACGC
AACGACGGACATTCGCGGTGGAGAGGCGAGGGTTGTGTGGTGCAGATGTT
CCAGCAAACAACCGTCATCAGCTTCAGCAGGACTTGGACAAACTTCAAGC
ATCTGTCGTCACCGGAAGCAAGCTACAGATTAACCACATCTTCGGCTGTG
TGGCTCGCACCAGCTTTCTGATAAACCTGAAGAACAAAACAACGGGGGGA
TTTGTAGACGCGATCGTTAAAACATCGCTGGGTCCGTTCTGTCAAACCAC
ACCTCGTCAAGTACAATGGCAAGGGGAAAAGTTCGTGCCTTCCCAAGACT
TGGACAAACTTCAAGCATCTGTCGTCACCGGAAGCAAGCTACAGATTAAC
CACATCTTCGGCTGTGTGGCTCGCACCAGCTTTCTGATAAACCTGAAGAA
CAAAACAACGGGGGGATTTGTAGACGCGATCGTTAAAACATCGCTGGGTC
CGTTCTGTCAAACCACACCTCGTCAAGTACAATGGCAAGGGGAAAAGTTC
GTGCCTTCCCAA
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