mRNA_H-paniculata_contig30121.8174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30121.8174.1
Unique NamemRNA_H-paniculata_contig30121.8174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE)

HSP 1 Score: 64.3 bits (155), Expect = 1.630e-9
Identity = 45/121 (37.19%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   34 SKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTARSHI----TFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            S +QRWLK     R    I P L    +   + + L+H     I    TF   +  IHI E WF + +++      P E     T  Q KSHIPK+MF+ AVSRP    D    +DGKIGI
Sbjct:  154 STVQRWLKCKKIRRHSNAIKPFLCEKGKLKILKYCLEHIVAPSIPMNPTFHHFYDYIHIDEKWFNITKEKTTFYALPDEPDPYRT-AQSKSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGI 273          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI000B78B07A (uncharacterized protein LOC110692558 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B07A)

HSP 1 Score: 63.5 bits (153), Expect = 2.960e-9
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 1
Query:    1 RLAEVGLVAGSSKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTARSHITFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            R   + L    S + R++K          + P+L+  + K R+ + L    + +  F   +  IH+ E WFY+ +      + PGE +   T  + K  + KVMF+CAV+RP  + D    FDGKIG+
Sbjct:  101 RALAIALGVSKSTIHRFIKSGQIKPHTNALKPALTENNIKERLKWCLKAIDQDNGMFNDMYNTIHLDEKWFYMTKGTQRYYLLPGETQPYRT-CKSKRFVTKVMFLCAVARPQFNADGECIFDGKIGM 227          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.720e-8
Identity = 40/130 (30.77%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 RLAEVGLVAGSSKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTAR--SHITFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLS----RDFDGKIGI 372
            R     L   S+ LQR++K          + P+LS      RV FI           TF   +  +H+ E WF++ + +  V + P E        ++KSHIPK+MF+CAV+RP ++      FDG++G+
Sbjct:  144 RSLSAALAIPSTTLQRYVKSKVLRVHTVTLKPTLSEDQNAERVRFISSFITLIPRGATFSPMYDRVHLDEKWFFMKKTKRRVYLTPTEP-TPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGM 272          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI001C26DA77 (uncharacterized protein LOC121771521 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C26DA77)

HSP 1 Score: 57.0 bits (136), Expect = 4.570e-7
Identity = 38/117 (32.48%), Postives = 55/117 (47.01%), Query Frame = 1
Query:   46 RWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTA----RSHITFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            RW K          I P+L+  ++ +R+ + L H         + +      +HI E WFY+++      M P E+    +  + K  I KVMF+CAVSRP    D    FDGKIGI
Sbjct:  136 RWAKNNLIRPHTNAIKPALTEANKISRMRWCLTHIQPAIDEGKLLYHAMHNTVHIDEKWFYMIKASEKYYMLPDEDEPYMS-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGI 251          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI001C27814C (uncharacterized protein LOC121774357 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27814C)

HSP 1 Score: 57.0 bits (136), Expect = 5.770e-7
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 RLAEVGLVAGSSKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHT----ARSHITFRTGFRAIHIGEAWFYLLR--DRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            R   V L    S L +W+K+         I P+L+  ++  R  + L        +  + F++    +HI E WFY+ +  DRY+  + P E+    +  + K +I K+MF+CAVSRP    D    +DGK+GI
Sbjct:  102 RKMTVKLNVSKSTLGQWVKQGKLRPYTNAIKPALTNMNKIARSRWSLSQLQPQITQGRVQFQSMHNVVHIDENWFYMTKVSDRYY--LLPNEDEPYRS-CKSKRYITKLMFMCAVSRPQFGMDGQATYDGKVGI 232          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.950e-7
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:  190 IHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDL----SRDFDGKIGI 372
            IH+ E WF+L +D+    +  GEE + S   ++KSHIPK+MF+ AV RP      S+ FDGK+GI
Sbjct:  153 IHLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGI 216          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI001C251DD6 (uncharacterized protein LOC121809230 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C251DD6)

HSP 1 Score: 56.2 bits (134), Expect = 7.610e-7
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 1
Query:   46 RWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTA----RSHITFRTGFRAIHIGEAWFYLLR--DRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            RW K          I P+L+  ++ +R+ + L H         + +      IHI E WFY+ +  DRY+  + P E+       + K  I KVMF+CAVSRP    D    FDGKIGI
Sbjct:   10 RWAKSHLIRTHTNAIKPTLTEANKISRMRWCLTHIQPTLYEGKLLYHAMHNTIHIDEKWFYMTKASDRYY--LLPDEDEPYRA-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGI 125          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI001C272034 (uncharacterized protein LOC121760844 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C272034)

HSP 1 Score: 55.8 bits (133), Expect = 9.450e-7
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   46 RWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTA----RSHITFRTGFRAIHIGEAWFYLLR--DRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            RW K          I P+L+  ++ +R+ + L H         + +      +HI E WFY+ +  DRY+  + P E+    +  + K  I KVMF+CAVSRP    D    FDGKIGI
Sbjct:  123 RWAKNNLIRPHTNAIKPALTEANKISRMRWCLTHIQPAMDEGKLRYHAMHNTVHIDEKWFYMTKASDRYY--LLPDEDEPYRS-CRSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGI 238          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI0020096116 (uncharacterized protein LOC125197723 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020096116)

HSP 1 Score: 56.2 bits (134), Expect = 1.050e-6
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   46 RWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHTA----RSHITFRTGFRAIHIGEAWFYLLR--DRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            RW K          I P+L+  ++ +R+ + L H         + +      +HI E WFY+ +  DRY+  + P E+    +  + K  I KVMF+CAVSRP    D    FDGKIGI
Sbjct:   49 RWAKNGLIRPHTNAIKPALTEANKISRMRWCLSHIQPAIYEGKLLYHAMLNTVHIDEKWFYMTKASDRYY--LLPDEDEPYRS-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGI 164          
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Match: UPI001C26F1B3 (uncharacterized protein LOC121761851 n=5 Tax=Salvia splendens TaxID=180675 RepID=UPI001C26F1B3)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 39/126 (30.95%), Postives = 58/126 (46.03%), Query Frame = 1
Query:   19 LVAGSSKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHT----ARSHITFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHIPKVMFICAVSRPDLSRD----FDGKIGI 372
            L    S + R++KE         I P L+ +++  R+ + L H     A   + +      +HI E WFY+ +      + PGE        + K  I KVMF+CAV RP  + +    FDGKIGI
Sbjct:  110 LEVSKSTVARFVKEHQLRPHTNAIKPILTASNKVARMRWSLSHIQPLIANGMLKYHPMHNVVHIDEKWFYMTKTSERYYLLPGETEPYRA-CKSKRFITKVMFMCAVCRPQFAENGEVIFDGKIGI 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30121.8174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A484N8H9_9ASTE1.630e-937.19Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI000B78B07A2.960e-929.69uncharacterized protein LOC110692558 n=2 Tax=Cheno... [more]
F0WV30_9STRA4.720e-830.77Transposase putative n=1 Tax=Albugo laibachii Nc14... [more]
UPI001C26DA774.570e-732.48uncharacterized protein LOC121771521 n=1 Tax=Salvi... [more]
UPI001C27814C5.770e-730.60uncharacterized protein LOC121774357 n=1 Tax=Salvi... [more]
A0A6G0X8U9_9STRA5.950e-746.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001C251DD67.610e-734.45uncharacterized protein LOC121809230 n=1 Tax=Salvi... [more]
UPI001C2720349.450e-733.61uncharacterized protein LOC121760844 n=1 Tax=Salvi... [more]
UPI00200961161.050e-633.61uncharacterized protein LOC125197723 n=1 Tax=Salvi... [more]
UPI001C26F1B31.090e-630.95uncharacterized protein LOC121761851 n=5 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30121contigH-paniculata_contig30121:1939..2313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog4792.ETI40837
Hectar predicted targeting categoryother localisation
EggNOG OGs2CTB4@1,2RFQE@2759,3QH57@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.1585643-CDS-H-paniculata_contig30121:1938..23131622929925.1585643-CDS-H-paniculata_contig30121:1938..2313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30121 1939..2313 +
1691481072.1246884-CDS-H-paniculata_contig30121:1938..23131691481072.1246884-CDS-H-paniculata_contig30121:1938..2313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30121 1939..2313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30121.8174.1prot_H-paniculata_contig30121.8174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30121 1939..2313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30121.8174.1

>prot_H-paniculata_contig30121.8174.1 ID=prot_H-paniculata_contig30121.8174.1|Name=mRNA_H-paniculata_contig30121.8174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
RLAEVGLVAGSSKLQRWLKEMDAPRVQRRIIPSLSLTHQKNRVDFILDHT
ARSHITFRTGFRAIHIGEAWFYLLRDRYHVRMFPGEERVGSTKVQYKSHI
PKVMFICAVSRPDLSRDFDGKIGI*
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mRNA from alignment at H-paniculata_contig30121:1939..2313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30121.8174.1 ID=mRNA_H-paniculata_contig30121.8174.1|Name=mRNA_H-paniculata_contig30121.8174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig30121:1939..2313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTAGCCGAAGTTGGTCTCGTAGCCGGCAGCTCAAAGCTTCAGCGATG GCTCAAAGAGATGGACGCCCCGAGGGTGCAACGGCGCATTATCCCATCTC TGTCGCTGACGCACCAAAAAAACCGCGTAGACTTTATCTTGGACCACACA GCAAGGAGCCACATCACTTTCAGGACCGGCTTCCGAGCAATTCATATCGG CGAAGCGTGGTTTTACCTACTTCGCGACAGGTATCACGTCCGCATGTTCC CCGGGGAGGAAAGGGTGGGGTCCACCAAAGTACAGTACAAGAGTCACATT CCTAAGGTGATGTTCATCTGCGCCGTTTCGCGTCCAGACCTTTCCCGTGA TTTCGACGGTAAGATTGGAATCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig30121:1939..2313+

>mRNA_H-paniculata_contig30121.8174.1 ID=mRNA_H-paniculata_contig30121.8174.1|Name=mRNA_H-paniculata_contig30121.8174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig30121:1939..2313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTAGCCGAAGTTGGTCTCGTAGCCGGCAGCTCAAAGCTTCAGCGATG
GCTCAAAGAGATGGACGCCCCGAGGGTGCAACGGCGCATTATCCCATCTC
TGTCGCTGACGCACCAAAAAAACCGCGTAGACTTTATCTTGGACCACACA
GCAAGGAGCCACATCACTTTCAGGACCGGCTTCCGAGCAATTCATATCGG
CGAAGCGTGGTTTTACCTACTTCGCGACAGGTATCACGTCCGCATGTTCC
CCGGGGAGGAAAGGGTGGGGTCCACCAAAGTACAGTACAAGAGTCACATT
CCTAAGGTGATGTTCATCTGCGCCGTTTCGCGTCCAGACCTTTCCCGTGA
TTTCGACGGTAAGATTGGAATCTAGAGACTAGCCGAAGTTGGTCTCGTAG
CCGGCAGCTCAAAGCTTCAGCGATGGCTCAAAGAGATGGACGCCCCGAGG
GTGCAACGGCGCATTATCCCATCTCTGTCGCTGACGCACCAAAAAAACCG
CGTAGACTTTATCTTGGACCACACAGCAAGGAGCCACATCACTTTCAGGA
CCGGCTTCCGAGCAATTCATATCGGCGAAGCGTGGTTTTACCTACTTCGC
GACAGGTATCACGTCCGCATGTTCCCCGGGGAGGAAAGGGTGGGGTCCAC
CAAAGTACAGTACAAGAGTCACATTCCTAAGGTGATGTTCATCTGCGCCG
TTTCGCGTCCAGACCTTTCCCGTGATTTCGACGGTAAGATTGGAATCTAG
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