mRNA_H-paniculata_contig3012.8172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3012.8172.1
Unique NamemRNA_H-paniculata_contig3012.8172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A6H5JQN7_9PHAE (Kin17_mid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQN7_9PHAE)

HSP 1 Score: 557 bits (1436), Expect = 3.240e-192
Identity = 334/487 (68.58%), Postives = 361/487 (74.13%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGT--ATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATS----------------------NALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICKAVPI 1675
            MPKHGFLTPKAISNRIKAKGL KLRWYCEMC KQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMK+YSE FE+EFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNST WETLTSFVLYLGK  K V DETEKGWYIQW+DRDPRLLAMQEAAA+R+K+DLDDEEKQARAIEKQIQAAKARDEGR    A A GPTELRRE+GQ++L+IGL + A      G   +  T+                        LKRP+   S AFG     EG             XXXXXX           RSVMEV+M            XXXXXXXXXXE                       A+ S RK+YWLR GIVVKVMNK+VGGGKYYKKKAR+RKVVERYVGEVKM++SGDRLRVDQ+DLETVIPA+GGEV+VVNGRCRG RA LLSLDTEAFSASVR+TSDGPD  TVL+KVEYEDICKAVP+
Sbjct:   35 MPKHGFLTPKAISNRIKAKGLCKLRWYCEMCVKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKQYSEDFEKEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTHWETLTSFVLYLGKVKKAVVDETEKGWYIQWVDRDPRLLAMQEAAARRQKSDLDDEEKQARAIEKQIQAAKARDEGRADTDAAAAGPTELRREEGQASLRIGLKSRAQTFVPGGGSGSDLTTAXXXXXXXXXXXXXXXXXXXXGGLLKRPK--LSGAFG-----EG-----------GAXXXXXXGPVKGKGKGAKRSVMEVMMXXXXXXXXXXXXXXXXXXXXXXEV---------------------KAKDSSRKDYWLRQGIVVKVMNKRVGGGKYYKKKARLRKVVERYVGEVKMIDSGDRLRVDQDDLETVIPAVGGEVLVVNGRCRGERATLLSLDTEAFSASVRITSDGPDLGTVLDKVEYEDICKAVPV 482          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A6U0Y7K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y7K8_9STRA)

HSP 1 Score: 362 bits (929), Expect = 5.940e-117
Identity = 219/461 (47.51%), Postives = 279/461 (60.52%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRR--EDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            MPKHGFLTPKAI NRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRI+A+NP  VM +YS++FEE FL+ LSR H TKRV A+LVY E+I  K H HMN+T+W TLT+FVLYLGK GKVVADETEKGWYIQWIDRDP ++A Q+A                + + +++QAA A +E      A   +EL R   D + +L++G  +TA           +AT  + K+PR   SSAFG  E  +   + G                          + M+ LM+QE  +K A L                    VA   +             +RK+YWL  GIVVKV+NKK+  GKYYK K  + KV+++YVG V+M   GDRL++DQ+D+ETVIP  GG V ++NGR RGC   ++ +D + F+ SVRV  +G  R   L+ + YED+ K
Sbjct:    1 MPKHGFLTPKAIGNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIYADNPGKVMDQYSKEFEEYFLETLSRHHNTKRVHANLVYKEYIGDKHHVHMNATKWTTLTNFVLYLGKTGKVVADETEKGWYIQWIDRDPAVVARQQAXXXXXXXXXXXXXXXQKEVARRVQAAGAAEEP----DAPQASELSRGAPDEKVSLQLGKASTA-----------TATVRSAKKPRLGASSAFGDAEVVDDGPKAGAGLGSAKPKF----------------NAMQALMQQEEKRKQASL--------------------VAEEKQ-------------QRKDYWLHTGIVVKVINKKLAEGKYYKGKGDVVKVIDKYVGVVEMHHGGDRLQLDQDDVETVIPNQGGRVRILNGRGRGCIGEVVRIDIDKFAVSVRVL-EGDRRGQTLDNIVYEDVSK 396          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A835Z894_9STRA (Antigenic determinant of recA protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z894_9STRA)

HSP 1 Score: 360 bits (924), Expect = 7.800e-116
Identity = 251/459 (54.68%), Postives = 300/459 (65.36%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            MPKH  LTPKAI NRIKAKGLQKLRWYC+MC KQCRDENGFKCH TSE HLRQMR+F+ENP++VM+E+S++FEE+F++VLSRR GTKR  A+ VYNEFIAHK+HTHMN+T+WETLT+FV YLGK G+ + DETEKGWYIQWI+RDP LLA Q AA K+ KADLDD+E+Q RA++ Q+ A                + L R D   A+ + +                       RP      AF           D  XXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXX    Q             R G   A+       WL  GIVVKVMNK+VGGGKYYK K  +R+V+E ++ EVKM++ GDRLRVDQ+DLETVIPA+G +V++VNGRCRG  A LL+LD + F A VRV  DGP + T L KV+YE+I K
Sbjct:    1 MPKHDALTPKAIGNRIKAKGLQKLRWYCQMCAKQCRDENGFKCHTTSESHLRQMRVFSENPDSVMEEFSQEFEEDFIEVLSRRFGTKRTHANQVYNEFIAHKSHTHMNATKWETLTNFVKYLGKTGQCIVDETEKGWYIQWINRDPALLARQAAADKKRKADLDDDERQRRALDAQV-AXXXXXXXXXXXXXXXXSALNRLDDAPAISLAVTGXXXXXXXXXXXXX------XXRPAV---PAF-----------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQAAK----------RRGVDDAK----LPNWLHAGIVVKVMNKQVGGGKYYKAKGVVRRVIEDFIAEVKMVDGGDRLRVDQDDLETVIPALGKDVLIVNGRCRGSIAELLALDVDNFCARVRVV-DGPQKGTELPKVDYENISK 423          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: W2MU51_PHYPR (Kin17_mid domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2MU51_PHYPR)

HSP 1 Score: 336 bits (861), Expect = 8.980e-107
Identity = 207/461 (44.90%), Postives = 270/461 (58.57%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEE--KEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+KAKGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A NP+  M  YSE FEE FL+ L RRHGTKR+RA+ VYNE+I  K H HMN+TQW TL+ FV YLG+ GK V DETEKGWYIQ+IDRDP+ +A Q+   K++KA+LD EE+    I++Q+Q A  ++   G  T   PT+L+R +    +K+ L              T+           + SS FG  EE  +E E +D R                         +V  ++ E ER K+               E + Q       + E   R+         R+E W+  GIV+KVMNKKVG G YYK K  ++ V E++   V++L+SGD LR+DQ+DLETVIP  G +V +VNG  RGC A LL +  + F A +R+ S G  R  +L++VEYEDIC+
Sbjct:    1 MGKHDFLTPKAIGIRMKAKGLQKLRWFCQVCQKQCRDENGFKCHTTSESHQRQMLIVANNPDKFMSGYSEMFEEAFLENLRRRHGTKRMRATHVYNEYIQDKLHVHMNATQWTTLSGFVQYLGRTGKCVVDETEKGWYIQYIDRDPKAIARQKELEKKKKAELDHEERNKLFIKRQLQIASGKE---GADTQQQPTKLQRGENGEKIKMSLGLKRESAKKETVAFTA-----------KASSVFGQGEEGSEEAESEDKRSNKR--------------------HAVDAIIEENERRKR---------------EKSRQ-------LEEESKRQ---------REENWVTTGIVIKVMNKKVGDGAYYKCKGVVKDVEEKFCATVELLDSGDVLRLDQDDLETVIPKPGRKVKIVNGLGRGCTAKLLDISVDDFCARIRIDS-GSYRGEILDRVEYEDICR 395          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A421F841_9STRA (Kin17_mid domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F841_9STRA)

HSP 1 Score: 333 bits (855), Expect = 8.880e-106
Identity = 215/461 (46.64%), Postives = 273/461 (59.22%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATA--PIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+KAKGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A +P   M  YSE FEE FL+ L RRHGTKR+RA+ VYNE+IA K HTHMNSTQWETL SFV YLG+ GK V DETEKGW++Q+IDRDPR +A QE   K++KA+LD EE+    IEKQ++ A  ++E     T   PT+L+R D    +KI L A +      + GAV TS   N+       F    GG+ + E ++ D +                        R+ ++ +ME           XXXXX                                 +RKE W+  GIVVKV+NKKVG G+YYK K  I+ V ++Y   V++LESGD L++DQ+DLETVIP  G +V +VNG  RG  A LL +  E F A +R+ S G  R  +L++VEYEDI +
Sbjct:    1 MGKHDFLTPKAIGIRMKAKGLQKLRWFCQVCQKQCRDENGFKCHTTSEAHQRQMLIVAADPNKFMSGYSEMFEEAFLENLRRRHGTKRMRAAHVYNEYIADKLHTHMNSTQWETLGSFVQYLGRTGKCVVDETEKGWHLQYIDRDPRAIARQEELEKKKKAELDHEERNRAFIEKQLKIASRQEEAE---TEQLPTKLQRADNGEKIKISLAAKSVGKEGGSSGAVKTSIFGNSSGV----FGGDKGGKPDNERQEHDRKRSK---------------------RNAVDAIMEXXXXXXXXXXXXXXXXLKR------------------------------QRKENWIATGIVVKVVNKKVGDGRYYKSKGVIKDVEDKYCATVELLESGDVLKLDQDDLETVIPKPGRKVKIVNGIGRGSIAKLLDISMEDFCARIRIDS-GFRRGEILDRVEYEDISR 402          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: M4BWP2_HYAAE (Kin17_mid domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWP2_HYAAE)

HSP 1 Score: 333 bits (855), Expect = 1.260e-105
Identity = 206/459 (44.88%), Postives = 269/459 (58.61%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+KAKGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A +P+  M  YSE FE+ FL+ L RRHGTKR+RA+ VYNE+IA K H HMN+TQWETL SFV YLG+ GK V DETEKGW+IQ+IDRDP+ +A QE   K++KADLD EE+    I++QI+ +  +D   G  T   PT+L+R +    +KI L A       + + ++ A   AL       ++ FG  + KE E++                              MEV+ E+   K+ A                  +                      +RKE W+  GIVVKV N KVG G+Y+K K  ++ V +++   V+ML+SGD LR+DQ+DLETVIP +G  V VVNG  RGC A LL++    F A +R+ S GP R   L++VEYEDIC+
Sbjct:    1 MGKHDFLTPKAIGIRMKAKGLQKLRWFCQVCQKQCRDENGFKCHTTSEAHQRQMLIVANDPDKFMSGYSELFEDAFLENLRRRHGTKRMRATHVYNEYIADKLHVHMNATQWETLGSFVQYLGRTGKCVVDETEKGWHIQYIDRDPKAIARQEDLEKKKKADLDHEERNRLFIQRQIKISSEKD---GVETTQRPTKLQRGENGETIKISLLAAKKERGMKDSGLSDA-GEALAFGGIASANVFGNADVKETEKK-------------------------RENWKMEVVGEKRSGKQYA----------------VDSIMEXXXXXXXXXXXXXXXXXXRQRKENWVTAGIVVKVTNTKVGDGRYHKCKGVVKDVEDKFCATVEMLDSGDVLRLDQDDLETVIPKLGRIVKVVNGLGRGCTAKLLAISVNDFCARIRIDS-GPHRGETLDRVEYEDICR 413          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: H3GTM3_PHYRM (Kin17_mid domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTM3_PHYRM)

HSP 1 Score: 333 bits (853), Expect = 1.710e-105
Identity = 214/462 (46.32%), Postives = 270/462 (58.44%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEE---KEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+KAKGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A +P+  M  YSE FEE FL+ L RRHGTKR+RAS VYNE+IA K H HMN+TQW TL  FV YLG+ GK V DETEKGW+IQ+IDRDP+ +A QE   K++KA+LD EE+    IE+Q++ A  +D   G  T   PT+L+R +    +KI L A   +    G+        A        SS FG E+    +E E +D R                        R  ++ +ME           XXXXXXX                               +RKE W+  GIVVKV NKKVG G+YYK K  ++ V +++   V++L+SGD LR+DQ+DLETVIP  G +V +VNG  RGC A LL +  E F A +R+ S GP R  VL++VEYEDI +
Sbjct:    1 MGKHDFLTPKAIGIRMKAKGLQKLRWFCQVCQKQCRDENGFKCHTTSEAHQRQMLIVANDPDKFMSGYSEMFEEAFLENLRRRHGTKRMRASHVYNEYIADKLHVHMNATQWTTLAGFVQYLGRTGKCVVDETEKGWHIQYIDRDPKAIARQEELQKKKKAELDHEERNRLFIERQLKIASEKD---GADTQQRPTKLQRGENGEKIKISLAAKPTVKKEDGSSDKGGAFGAAG------SSVFGDEKREKRRETEAEDKRPNK---------------------RHAVDAIMEXXXXXXXXXXXXXXXXXXR------------------------------QRKENWVATGIVVKVTNKKVGDGRYYKCKGAVKDVEDKFCATVELLDSGDVLRLDQDDLETVIPKPGRKVKIVNGLGRGCTAKLLDISVEDFCARIRIES-GPRRGEVLDRVEYEDISR 401          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A2D4BM50_PYTIN (Kin17_mid domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM50_PYTIN)

HSP 1 Score: 335 bits (860), Expect = 4.400e-105
Identity = 211/462 (45.67%), Postives = 270/462 (58.44%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQI---QAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAISNR+KAKGLQKLRWYC++CQKQCRDENGFKCH TSE H RQM I A NP+  +  YSE FE+ FL+ L RRHGTKR++A++VYNE+I+ K H HMN+TQW TL SFV YLG+ GK V DETEKGW+IQ+IDRDPR +A QE   K++KADLD EE+    +E+Q+   Q A    +G        PT+L R DG + + + L+A  P    +GA      +N         +S    +  K G +Q                           +  ++ LME+          XXXXXX                                 R E+W+R GIVVKV+NKKV  GKYYK+K  I  V +++   V+MLESGD L++DQ+DLETVIP +G +V +VNG  RG    LLS++ E F ASV + + G  R  VL +VEYEDIC+
Sbjct:  109 MGKHDFLTPKAISNRMKAKGLQKLRWYCQICQKQCRDENGFKCHTTSESHQRQMLIVANNPDKFLXGYSEMFEKAFLENLRRRHGTKRMQANVVYNEYISDKLHVHMNATQWTTLGSFVQYLGRTGKCVVDETEKGWFIQYIDRDPRAIARQEELEKKKKADLDHEERNRAFLERQLKIAQEAVXTKQGDDDGGEQQPTKLLRRDGDAKISLSLDANKP---GKGAQQKPPATNVFX-----XASGVALDAGKSGSKQ---------------------------KREVDALMEENEXXXXXXXXXXXXXX-------------------------------DRRLEHWIRKGIVVKVLNKKVADGKYYKQKGEIVGVKDKFAATVEMLESGDVLQLDQDDLETVIPKVGRQVRIVNGFGRGQLGSLLSINVEKFHASVEILT-GRKRGDVLKRVEYEDICR 503          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A3M6VG56_9STRA (Kin17_mid domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG56_9STRA)

HSP 1 Score: 330 bits (847), Expect = 1.490e-104
Identity = 209/470 (44.47%), Postives = 270/470 (57.45%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRREDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSA-----FGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSE------RKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+K+KGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A +P   M  YSE FEE FL+ L RRHGTKR+RA+ VYNE+IA K H HMN+TQWETL SFV YLG+ GK   DETEKGW+IQ+IDRDP+ +A QE   K++KA LD EE+    I++Q++ A  ++E     T   PT+L+R +    +KI L                AT N   +  S+   A     FGGE+  EG++                            R   E+ +E +R+ +                        V AI E   R      R  E      RKE W+  GIVVKV NKKVG G+YYK K  ++ V +++   V++L+SGD LR+DQ+DLETVIP  G +V +VNG  RGC A LL++    F A +R+ S G  R  +L++VEYEDIC+
Sbjct:    1 MGKHDFLTPKAIGIRMKSKGLQKLRWFCQVCQKQCRDENGFKCHTTSEAHQRQMLIVANDPNKFMSGYSEMFEEAFLENLRRRHGTKRMRATHVYNEYIADKMHIHMNATQWETLGSFVQYLGRVGKCTVDETEKGWHIQYIDRDPKAIARQEELEKKKKAKLDHEERNRLFIKRQLKIASEKEE---VGTTHRPTKLQRGENGDRIKILL----------------ATKNEDGKKDSKVLGAVKVSVFGGEDNDEGKKT---------------------------RESREMALEAKRSDQRH---------------------AVGAIMEEEERHRKEKNRRLEQESKCLRKENWITTGIVVKVTNKKVGDGQYYKCKGVVKNVEDKFCASVELLDSGDILRLDQDDLETVIPKPGRKVKIVNGLGRGCTAKLLNISVADFCARIRIDS-GSHRGEILDRVEYEDICR 402          
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Match: A0A0P1AML2_PLAHL (Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AML2_PLAHL)

HSP 1 Score: 328 bits (842), Expect = 5.860e-104
Identity = 204/461 (44.25%), Postives = 267/461 (57.92%), Query Frame = 2
Query:  287 MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGHLRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIAHKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLAMQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRR-EDGQSA-LKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEKEGEQQDGRXXXXXXXXXXXXXXXXXXXXXXXXRSVMEVLMEQERAKKAAKLEXXXXXXXXXXEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPGIVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLETVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLNKVEYEDICK 1663
            M KH FLTPKAI  R+KAKGLQKLRW+C++CQKQCRDENGFKCH TSE H RQM I A NP   M  YSE FEE FL+ L RRHGTKR+RA+ VYNE+IA K H HMN+T+W TL+ FV YLG++GK V DETEKGW+IQ+IDRDP+ +A Q+   K++K +LD EE+    IE+Q++ A  +D   G  T + PT+L+R E G+   L +G+   +  +     V     S  + +   RF +      EK   +                            R  ++ +ME+E  ++        XX     E+  Q                        RKE W+  GIV+KVMNK +G G YYK K  +  V +++   VK+L+SGD LR+DQEDLETVIP  G +V +VNG  RGC A LL +  + F A +R+ S GP R  +L+ VEYEDICK
Sbjct:    1 MGKHDFLTPKAIGIRMKAKGLQKLRWFCQVCQKQCRDENGFKCHTTSEAHQRQMLIVANNPNKFMSGYSELFEEAFLENLRRRHGTKRMRATYVYNEYIADKLHVHMNATRWTTLSGFVQYLGRSGKCVVDETEKGWHIQYIDRDPKAIARQQELEKKKKMELDHEERNRLFIERQLKIASEKD---GVETQIQPTKLQRGEHGEKIKLSLGVKKESRKMEDMKTVAFKDKSTKMFQETERFETV-----EKSSNK----------------------------RQAIDAIMEEEERQRXX------XXRQLKNESKRQ------------------------RKENWITTGIVIKVMNKTLGDGAYYKCKGVVEDVKDKFCATVKLLDSGDVLRLDQEDLETVIPKPGRKVQIVNGLGRGCTAKLLEISVDNFCARIRIDS-GPHRGEILDGVEYEDICK 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3012.8172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQN7_9PHAE3.240e-19268.58Kin17_mid domain-containing protein n=2 Tax=Ectoca... [more]
A0A6U0Y7K8_9STRA5.940e-11747.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z894_9STRA7.800e-11654.68Antigenic determinant of recA protein n=1 Tax=Trib... [more]
W2MU51_PHYPR8.980e-10744.90Kin17_mid domain-containing protein n=14 Tax=Phyto... [more]
A0A421F841_9STRA8.880e-10646.64Kin17_mid domain-containing protein n=2 Tax=Phytop... [more]
M4BWP2_HYAAE1.260e-10544.88Kin17_mid domain-containing protein n=1 Tax=Hyalop... [more]
H3GTM3_PHYRM1.710e-10546.32Kin17_mid domain-containing protein n=1 Tax=Phytop... [more]
A0A2D4BM50_PYTIN4.400e-10545.67Kin17_mid domain-containing protein (Fragment) n=1... [more]
A0A3M6VG56_9STRA1.490e-10444.47Kin17_mid domain-containing protein n=1 Tax=Perono... [more]
A0A0P1AML2_PLAHL5.860e-10444.25Protein containing a U1-type Zn-finger and implica... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3012contigH-paniculata_contig3012:3837..8319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score557.0
Seed ortholog evalue8.4e-156
Seed eggNOG ortholog2880.D8LTB0
KEGG koko:K13102
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016604,GO:0016607,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035874,GO:0040008,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048638,GO:0050789,GO:0050793,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0120126,GO:1901360,GO:1901363,GO:1901576
EggNOG free text desc.DNA replication
EggNOG OGsKOG2837@1,KOG2837@2759
Ec32 ortholog descriptionDNA/RNA-binding protein Kin17 (C2H2 ZF)
Ec32 orthologEc-12_005880.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons5
Model size1785
Cds size1398
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.9274664-UTR-H-paniculata_contig3012:3836..39371622929924.9274664-UTR-H-paniculata_contig3012:3836..3937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3012 3837..3937 -
1691481072.009252-UTR-H-paniculata_contig3012:3836..39371691481072.009252-UTR-H-paniculata_contig3012:3836..3937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3012 3837..3937 -
1622929925.0123663-UTR-H-paniculata_contig3012:8033..83191622929925.0123663-UTR-H-paniculata_contig3012:8033..8319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3012 8034..8319 -
1691481072.0834084-UTR-H-paniculata_contig3012:8033..83191691481072.0834084-UTR-H-paniculata_contig3012:8033..8319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3012 8034..8319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.941324-CDS-H-paniculata_contig3012:3937..41321622929924.941324-CDS-H-paniculata_contig3012:3937..4132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 3938..4132 -
1691481072.0216272-CDS-H-paniculata_contig3012:3937..41321691481072.0216272-CDS-H-paniculata_contig3012:3937..4132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 3938..4132 -
1622929924.953626-CDS-H-paniculata_contig3012:4499..51951622929924.953626-CDS-H-paniculata_contig3012:4499..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 4500..5195 -
1691481072.033047-CDS-H-paniculata_contig3012:4499..51951691481072.033047-CDS-H-paniculata_contig3012:4499..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 4500..5195 -
1622929924.9699452-CDS-H-paniculata_contig3012:5646..57811622929924.9699452-CDS-H-paniculata_contig3012:5646..5781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 5647..5781 -
1691481072.0415728-CDS-H-paniculata_contig3012:5646..57811691481072.0415728-CDS-H-paniculata_contig3012:5646..5781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 5647..5781 -
1622929924.9884202-CDS-H-paniculata_contig3012:6111..62821622929924.9884202-CDS-H-paniculata_contig3012:6111..6282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 6112..6282 -
1691481072.0501106-CDS-H-paniculata_contig3012:6111..62821691481072.0501106-CDS-H-paniculata_contig3012:6111..6282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 6112..6282 -
1622929925.0012574-CDS-H-paniculata_contig3012:7832..80331622929925.0012574-CDS-H-paniculata_contig3012:7832..8033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 7833..8033 -
1691481072.0639563-CDS-H-paniculata_contig3012:7832..80331691481072.0639563-CDS-H-paniculata_contig3012:7832..8033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3012 7833..8033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3012.8172.1prot_H-paniculata_contig3012.8172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3012 3938..8033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3012.8172.1

>prot_H-paniculata_contig3012.8172.1 ID=prot_H-paniculata_contig3012.8172.1|Name=mRNA_H-paniculata_contig3012.8172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=466bp
MPKHGFLTPKAISNRIKAKGLQKLRWYCEMCQKQCRDENGFKCHQTSEGH
LRQMRIFAENPEAVMKEYSEQFEEEFLDVLSRRHGTKRVRASLVYNEFIA
HKTHTHMNSTQWETLTSFVLYLGKNGKVVADETEKGWYIQWIDRDPRLLA
MQEAAAKREKADLDDEEKQARAIEKQIQAAKARDEGRGTATAMGPTELRR
EDGQSALKIGLNATAPIIAARGAVVTSATSNALKRPRSRFSSAFGGEEEK
EGEQQDGRAGAGSRTASSSSSAGSGGGKGKGKRSVMEVLMEQERAKKAAK
LEEESAAAAAAPEATTQTTGTVAAIGENGGREGTGSARGSERKEYWLRPG
IVVKVMNKKVGGGKYYKKKARIRKVVERYVGEVKMLESGDRLRVDQEDLE
TVIPAIGGEVMVVNGRCRGCRAILLSLDTEAFSASVRVTSDGPDRCTVLN
KVEYEDICKAVPIDA*
back to top

mRNA from alignment at H-paniculata_contig3012:3837..8319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3012.8172.1 ID=mRNA_H-paniculata_contig3012.8172.1|Name=mRNA_H-paniculata_contig3012.8172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4483bp|location=Sequence derived from alignment at H-paniculata_contig3012:3837..8319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCACATTCCTCGGGAGAAGACAGGAGACGTTGGCCGCCCAGCTCCTT GTAGTGTCTACGCTAAAGTTTCTGTATTATTGCTTCCCCTTATTGAAGCT AGAGTTTTCATCCATTTCTGAGGTCTTTTGGTCCTGGTATGGAGATAGTT TTACTGTTGTGCTGAGCGTATCCACAGTACATGAGAGACAGGAACTGTAA CAGAACGAGGGCGTTTACGTGGAACAAACCCCAGCAGCTCCACACCGACA GTAGCCCCAACAGCTGTTGTCAAGCAACCCGATATCATGCCAAAGCATGG ATTCCTCACACCGAAGGCGATTAGCAACCGCATCAAGGCGAAGGGCCTGC AGAAGCTGAGATGGTACTGTGAGATGTGCCAAAAGCAGTGTCGAGACGAA AATGGGTTCAAGTGCCATCAGACGAGCGAGGGCCACCTCCGGCAGATGCG AATATTCGCCGAAAACCCCGAGGCCGTCATGAAGGAGGTGGGGCAAGCGT CTCTGCCATCGATTTGATTCATTTAAACTTCAAGTTCGGGGTTTCAATAA TAGGTACGTTACCTAAACCCCCGTCGGGGTATACCACCGCAACGGCAAAT TTCAAATTTCCTCTGTTACAAGATGTACTACGCCTAGTGATGACTGGAGC ACAATCTACTGTAGTATACTACCCACAGTGATAACTCAAGTATCCCCCGG TAATATAGTAGTCTTTTTGGACGGCAGTGGGGTGGAGCAGATGAGGAGCC TGCGCCTTGGACGTCATGGACCCTTCTAGCGATTAGGGGGGGGCGGGGCG CCCTTTTCCCTGTCTGTACAGTACCCTACAAGTTGGTTGATTGGAACGTT GCAACCACTCTTGAACGCAGTGCCATCATCCCCCTGTTACCTTATCGTCC ACCCTGCTGCCTGCTATGTGAGAGCGGTACAAGCGGAAACCATACTGTAT GGCATGCTGTCACCTCCCCGCTGCTTGTCACCCCCGGATGATCGCCAAAG TTGCGGAGCAAATTATCACCCAGAATGAATCTGGAGAATATACCCTATTT GATTTCATATCGCTGATCAAGTGTACACAACTGTGATGTGAGGTCAGTTG CGTAACCTTAAGGAAGGTACAACGAAGTTGTAACACTAGTAACTATTGCC AGTGAGCTGCCATATGGATGAGGTTTGGTTGATAATTTCTATTTCTGCCA GGTGTTCACGTGCAAGTCACTCATGCCTACGCACAATGCACACGCGAGTG ATACCGTGGTACTCCGTTGTAAAGGTAGTAGCTGTTCAAAGAGGCCTGAG TCCTGGTACGTGGTGTTAATGAGAGCAAGACGCATGTTGTCCCCCCCGCC CCCCCCCCCCCGGTGGTGGGGTTTCCGGCGAAGAAACGTCATCAACGGCG CGTGTTATAGTACCTATGTTACGGAAATCGTTTCGTAGCTCCTCTACATG ACTTATCTGGCAACGTAACCTGCAAAATTCTGCCAGCCACTCGTACGAAG GAGAACTTGCAGTCAGCAGGAGGAAAGGGGGCTCCAAGCGCTTCTTTTGC AGTGTTTGTCATTTGCGATTATTTAACCTGTTGTGCTCTGGAAGTCGTGC TGCCGCCGTAGAGCGTGTGATTCACAGAGCAGCTTTTCTCACTTTCACTT TCCACTGCTGTTTTACGCCAAGTTTCCACAATATTGTTACTGGGATGCAT TGGGCCAACAGTGCACCCTGTATCTTCTCTCACGCACGTATATTCAGAAG GAATCGACAGCTCGGTGTTGATATTTAGCTCCATGGACAACAGGCCAACA ACCGAACACCCAAAATAAGGAAATAAATATCCGTTGTTGACAGTGCACCG GGATGCGCAACTGTTTGTGTACACTACAAAGATCCTCGATGACTGTAACG TTGAAGTCTCTTCTCAACCCAACCCCCATTCCCCGTGGCCACCATACCGT TCGGCACCTGCCCCGCCCCCGTCCTTGACCGATGGTTGTTCGGTGTCTTG AATCGAAACAACCGTCTTATCAACAAACACCCTGCAGTACTCGGAACAAT TTGAGGAGGAATTTCTGGACGTGCTGAGTAGGCGGCACGGCACTAAACGC GTCCGCGCTTCTCTTGTGTACAACGAGTTCATCGCCCACAAGACGCATAC GCACATGAACTCGACACAGTGGGAGACTCTGACCTCCTTCGTGCTATACT TGGGAAAGGTGAGGATTTGGAGTCAAGTGAGTTTCGGTGTGTTTGTTTAT CGGATCTTTGTGCGTATACTCTTAAGATGTTGTGTGTATACTCTGAGGAT GTTGTGTGTGTGTCAGCTTATCGGGGGCATAATTGCCCGTGAACAAATAG CCGAAGTGCAGTACGAATGACTAGCATGTAAATCTATTCTTACTTTTTTC GTGACTCTTCTATGTACGACCGGGAGTCATGCATGACCTTCTTGTTGTGG TTTCCTGTCGCCATCGCTTTCGTGACCCGCATGATCGCTTAGTAGCCTCG CTCAACGTATCATGTATGCATTCTGATCATACCATCAGAACGGCAAGGTG GTGGCGGACGAGACGGAGAAGGGTTGGTACATCCAGTGGATCGACCGAGA TCCCAGGTTGCTGGCCATGCAGGAAGCCGCCGCCAAGAGGGAAAAGGCCG ATCTTGACGATGAGGAGAAGCAGGTGAGGAGCGTGATCCAGTGGAAGAAG GGGCGTTTAACACTACACAAACACTTCAGAAGGCGGATCGTAAGAGGTGG AGATGCAGATAATTGCACATTCCAGTTGTTGAGATTATCGTTGTAGCGAG GAATTCCGAGGGTATTGCTGGAAACGCTTCTCTAAGGGACTGAGACAAGA TGAGGATGAACTGCCATCACGAGAACACAGCGTTGCGACTACCTCCAGAG TGCCGGTTCAGAGCGTCCATGCTCTGGTGAGGGTAGTGTTAGTATGAATT TCTCAACAAACACTCTAGGAAATGAGGAAGTAGGAGATAATTGACTGATG CATGTTTCTATATTCGCTTTTTGCACATTCTTGCTCGGTACATTTGATGA AACTTTAGCATGCAACCGCATTTGGTTACTACCTTCCTCCCCTACACACG CGCGCGCGCGCGTGCGTCTCATAGGCAAGAGCAATTGAAAAACAAATCCA GGCTGCCAAGGCTCGCGACGAAGGCAGGGGTACAGCGACCGCCATGGGAC CGACGGAGCTCCGCCGAGAAGACGGCCAATCCGCGCTGAAAATTGGGCTC AACGCCACGGCACCAATTATCGCGGCGCGCGGCGCCGTTGTCACCAGCGC GACCAGCAATGCCCTCAAGCGACCGAGGTCGAGATTTTCGAGCGCTTTCG GCGGGGAGGAAGAGAAGGAAGGAGAGCAGCAGGATGGCCGGGCGGGGGCG GGAAGTAGGACTGCCAGCAGCAGTAGTAGTGCGGGTAGTGGTGGTGGTAA AGGTAAGGGCAAGCGGAGCGTGATGGAAGTGTTGATGGAACAAGAGCGCG CTAAGAAGGCAGCTAAACTTGAAGAGGAGAGCGCAGCGGCGGCGGCGGCC CCGGAGGCGACGACTCAGACGACAGGAACCGTAGCCGCGATTGGAGAGAA CGGGGGGCGGGAGGGGACTGGAAGTGCGCGAGGAAGCGAGAGGAAAGAGT ACTGGCTGCGCCCGGGAATCGTGGTCAAGGTTATGAACAAGAAGGTCGGG GGTGGGAAGTACTACAAGAAAAAGGCTCGGATTCGCAAGGTGGTTGAGCG GTACGTGGGCGAAGTGAAGATGTTGGAGTCTGGAGACAGGTTAAGAGTGG ATCAGGAGGACCTTGAGACGGTGAGGAGGAGGGAGGCCGTATGTGTACCT GTGTGCGCGGGATCAACCGCTAGACCAAGGGGGCTACTGTACAACCCTTT GTCGCTCTGGGATGCGAACGTTTTTCCAGAAACGATTGTCTCGACAACTA CGAGGCTGCTGACAACGAAAAATAAATGATTTTTTTCTTGCACAGATAGA GGTTCTACACTAAAAGTGCATCCGCTCTGGGTAGGTCAAATACACATGCG ACGTTTTACCGCGTCACTATTAAGAGACTCATTGCCCCGCTTGAGATGTT CGAACCCCGCCCCTCGCCCCCGTGCCCCGTCCGGTGTCCGGTGGCTTCCC TCCAATGCTTTTTTTAATTTATTGTGATGTTTACCAGGTCATCCCCGCGA TTGGCGGCGAAGTCATGGTTGTGAACGGGCGATGCCGCGGCTGCCGAGCC ATCCTCCTGTCGCTAGATACTGAAGCCTTCAGTGCCAGCGTGCGAGTAAC AAGCGACGGTCCGGACCGATGCACGGTATTGAACAAAGTGGAGTATGAGG ACATCTGCAAGGCGGTGCCCATTGATGCATGAATATTGGCGGTTTCGTCG ATGGACTATTACGCAATAACCCCCCCCCCCCGTCTGTTTCGGGATTCGTG TGTGTGGTGGTAAGGCCATCTCCTATGGTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3012:3837..8319-

>mRNA_H-paniculata_contig3012.8172.1 ID=mRNA_H-paniculata_contig3012.8172.1|Name=mRNA_H-paniculata_contig3012.8172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2796bp|location=Sequence derived from alignment at H-paniculata_contig3012:3837..8319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGCATGGATTCCTCACACCGAAGGCGATTAGCAACCGCATCAA
GGCGAAGGGCCTGCAGAAGCTGAGATGGTACTGTGAGATGTGCCAAAAGC
AGTGTCGAGACGAAAATGGGTTCAAGTGCCATCAGACGAGCGAGGGCCAC
CTCCGGCAGATGCGAATATTCGCCGAAAACCCCGAGGCCGTCATGAAGGA
GATGCCAAAGCATGGATTCCTCACACCGAAGGCGATTAGCAACCGCATCA
AGGCGAAGGGCCTGCAGAAGCTGAGATGGTACTGTGAGATGTGCCAAAAG
CAGTGTCGAGACGAAAATGGGTTCAAGTGCCATCAGACGAGCGAGGGCCA
CCTCCGGCAGATGCGAATATTCGCCGAAAACCCCGAGGCCGTCATGAAGG
AGTACTCGGAACAATTTGAGGAGGAATTTCTGGACGTGCTGAGTAGGCGG
CACGGCACTAAACGCGTCCGCGCTTCTCTTGTGTACAACGAGTTCATCGC
CCACAAGACGCATACGCACATGAACTCGACACAGTGGGAGACTCTGACCT
CCTTCGTGCTATACTTGGGAAAGTACTCGGAACAATTTGAGGAGGAATTT
CTGGACGTGCTGAGTAGGCGGCACGGCACTAAACGCGTCCGCGCTTCTCT
TGTGTACAACGAGTTCATCGCCCACAAGACGCATACGCACATGAACTCGA
CACAGTGGGAGACTCTGACCTCCTTCGTGCTATACTTGGGAAAGAACGGC
AAGGTGGTGGCGGACGAGACGGAGAAGGGTTGGTACATCCAGTGGATCGA
CCGAGATCCCAGGTTGCTGGCCATGCAGGAAGCCGCCGCCAAGAGGGAAA
AGGCCGATCTTGACGATGAGGAGAAGCAGAACGGCAAGGTGGTGGCGGAC
GAGACGGAGAAGGGTTGGTACATCCAGTGGATCGACCGAGATCCCAGGTT
GCTGGCCATGCAGGAAGCCGCCGCCAAGAGGGAAAAGGCCGATCTTGACG
ATGAGGAGAAGCAGGCAAGAGCAATTGAAAAACAAATCCAGGCTGCCAAG
GCTCGCGACGAAGGCAGGGGTACAGCGACCGCCATGGGACCGACGGAGCT
CCGCCGAGAAGACGGCCAATCCGCGCTGAAAATTGGGCTCAACGCCACGG
CACCAATTATCGCGGCGCGCGGCGCCGTTGTCACCAGCGCGACCAGCAAT
GCCCTCAAGCGACCGAGGTCGAGATTTTCGAGCGCTTTCGGCGGGGAGGA
AGAGAAGGAAGGAGAGCAGCAGGATGGCCGGGCGGGGGCGGGAAGTAGGA
CTGCCAGCAGCAGTAGTAGTGCGGGTAGTGGTGGTGGTAAAGGTAAGGGC
AAGCGGAGCGTGATGGAAGTGTTGATGGAACAAGAGCGCGCTAAGAAGGC
AGCTAAACTTGAAGAGGAGAGCGCAGCGGCGGCGGCGGCCCCGGAGGCGA
CGACTCAGACGACAGGAACCGTAGCCGCGATTGGAGAGAACGGGGGGCGG
GAGGGGACTGGAAGTGCGCGAGGAAGCGAGAGGAAAGAGTACTGGCTGCG
CCCGGGAATCGTGGTCAAGGTTATGAACAAGAAGGTCGGGGGTGGGAAGT
ACTACAAGAAAAAGGCTCGGATTCGCAAGGTGGTTGAGCGGTACGTGGGC
GAAGTGAAGATGTTGGAGTCTGGAGACAGGTTAAGAGTGGATCAGGAGGA
CCTTGAGACGGCAAGAGCAATTGAAAAACAAATCCAGGCTGCCAAGGCTC
GCGACGAAGGCAGGGGTACAGCGACCGCCATGGGACCGACGGAGCTCCGC
CGAGAAGACGGCCAATCCGCGCTGAAAATTGGGCTCAACGCCACGGCACC
AATTATCGCGGCGCGCGGCGCCGTTGTCACCAGCGCGACCAGCAATGCCC
TCAAGCGACCGAGGTCGAGATTTTCGAGCGCTTTCGGCGGGGAGGAAGAG
AAGGAAGGAGAGCAGCAGGATGGCCGGGCGGGGGCGGGAAGTAGGACTGC
CAGCAGCAGTAGTAGTGCGGGTAGTGGTGGTGGTAAAGGTAAGGGCAAGC
GGAGCGTGATGGAAGTGTTGATGGAACAAGAGCGCGCTAAGAAGGCAGCT
AAACTTGAAGAGGAGAGCGCAGCGGCGGCGGCGGCCCCGGAGGCGACGAC
TCAGACGACAGGAACCGTAGCCGCGATTGGAGAGAACGGGGGGCGGGAGG
GGACTGGAAGTGCGCGAGGAAGCGAGAGGAAAGAGTACTGGCTGCGCCCG
GGAATCGTGGTCAAGGTTATGAACAAGAAGGTCGGGGGTGGGAAGTACTA
CAAGAAAAAGGCTCGGATTCGCAAGGTGGTTGAGCGGTACGTGGGCGAAG
TGAAGATGTTGGAGTCTGGAGACAGGTTAAGAGTGGATCAGGAGGACCTT
GAGACGGTCATCCCCGCGATTGGCGGCGAAGTCATGGTTGTGAACGGGCG
ATGCCGCGGCTGCCGAGCCATCCTCCTGTCGCTAGATACTGAAGCCTTCA
GTGCCAGCGTGCGAGTAACAAGCGACGGTCCGGACCGATGCACGGTATTG
AACAAAGTGGAGTATGAGGACATCTGCAAGGCGGTGCCCATTGATGCATG
AGTCATCCCCGCGATTGGCGGCGAAGTCATGGTTGTGAACGGGCGATGCC
GCGGCTGCCGAGCCATCCTCCTGTCGCTAGATACTGAAGCCTTCAGTGCC
AGCGTGCGAGTAACAAGCGACGGTCCGGACCGATGCACGGTATTGAACAA
AGTGGAGTATGAGGACATCTGCAAGGCGGTGCCCATTGATGCATGA
back to top