prot_H-paniculata_contig301.8168.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig301.8168.1
Unique Nameprot_H-paniculata_contig301.8168.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length153
Homology
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 6.290e-58
Identity = 106/152 (69.74%), Postives = 107/152 (70.39%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN                                            DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALY +KKEKPRS
Sbjct:   99 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN--------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.470e-56
Identity = 101/152 (66.45%), Postives = 106/152 (69.74%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDEN                                            DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALY  KKEKPRS
Sbjct:   38 MKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDEN--------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A7J9IJV7_9ROSI (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9IJV7_9ROSI)

HSP 1 Score: 181 bits (459), Expect = 1.700e-55
Identity = 97/152 (63.82%), Postives = 112/152 (73.68%), Query Frame = 0
Query:    5 PLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGT----LRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            P  GSS AKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVP DGCLN+ +ENV       +G+    FF+ +    +  L ++     LG     L    DEVLI+GFGR+GHAVGDIPGVRFKVVKV+GV+LLAL+ EKKEKPRS
Sbjct:   33 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVPTSLALALGNKNASFFQGLSHGNIRILALKSAPCALGNIDLGLVQFQDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 184          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 180 bits (457), Expect = 2.070e-55
Identity = 100/152 (65.79%), Postives = 105/152 (69.08%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DEN                                            DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALY +KKEKPRS
Sbjct:   61 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.780e-55
Identity = 98/152 (64.47%), Postives = 106/152 (69.74%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            M+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                            DEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALY EKKEKPRS
Sbjct:   36 MRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.370e-55
Identity = 99/152 (65.13%), Postives = 104/152 (68.42%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                            DEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALY EKKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A5D6XQ53_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ53_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.050e-54
Identity = 99/152 (65.13%), Postives = 104/152 (68.42%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK VRVQLIKN KK+AAFVPRDGCLN+ DEN                                            DEVLI+GFGRRGHAVGDIPGVRFKVVKV+GV+LLALY EKKEKPRS
Sbjct:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNSKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 176 bits (447), Expect = 3.090e-54
Identity = 97/152 (63.82%), Postives = 104/152 (68.42%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                            DEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALY EKKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: A0A0W8DH21_PHYNI (Actin-depolymerizing factor 10 n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DH21_PHYNI)

HSP 1 Score: 175 bits (443), Expect = 4.130e-54
Identity = 99/152 (65.13%), Postives = 103/152 (67.76%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLN+ DEN                                            DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALY EKKEKPRS
Sbjct:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDEN--------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108          
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 176 bits (446), Expect = 4.680e-54
Identity = 100/152 (65.79%), Postives = 103/152 (67.76%), Query Frame = 0
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLGTLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKPRS 152
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DEN                                            DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALY EKKEKPRS
Sbjct:   38 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDEN--------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig301.8168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI6.290e-5869.74Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA3.470e-5666.45Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
A0A7J9IJV7_9ROSI1.700e-5563.82Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
A0A4W5LQ08_9TELE2.070e-5565.7940S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
A0A6U0RBQ4_9STRA3.780e-5564.47Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A7R9WFA5_9STRA5.370e-5565.13Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
A0A5D6XQ53_9STRA2.050e-5465.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
B8C1Z7_THAPS3.090e-5463.82RS23, ribosomal protein 23 40S small ribosomal sub... [more]
A0A0W8DH21_PHYNI4.130e-5465.13Actin-depolymerizing factor 10 n=5 Tax=Peronospora... [more]
M4BPE8_HYAAE4.680e-5465.79Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 89..152
e-value: 3.4E-19
score: 70.4
coord: 1..88
e-value: 4.6E-33
score: 115.2
NoneNo IPR availablePANTHERPTHR11652:SF4040S RIBOSOMAL PROTEIN S23-1-RELATEDcoord: 106..152
coord: 4..67
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 2..68
e-value: 2.4E-27
score: 94.8
coord: 101..151
e-value: 6.9E-14
score: 51.4
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 83..152
e-value: 6.9E-6
score: 23.5
coord: 1..72
e-value: 1.1E-17
score: 61.7
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 106..152
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..67
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 25..32
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 102..150
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig301contigH-paniculata_contig301:22581..23814 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig301.8168.1mRNA_H-paniculata_contig301.8168.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig301 22581..23814 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig301.8168.1 ID=prot_H-paniculata_contig301.8168.1|Name=mRNA_H-paniculata_contig301.8168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFV
PRDGCLNFTDENVSVLFEPRVGSARLLFFEVMGDTYLTALIVEIYHTVLG
TLRNLDDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYLEKKEKP
RS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold