prot_H-paniculata_contig30097.8166.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig30097.8166.1
Unique Name	prot_H-paniculata_contig30097.8166.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	100

Homology

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.120e-56
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQVRQQR---DGIH 97
            QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIE+DS PMK+YPLPHM+VQKDLVPDMTNFYEQYKSIEPWLKTK +KDPDVEHLQ  Q R   DG++
Sbjct:   47 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMY 146

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 3.220e-56
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQVRQQR---DGIH 97
            QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIE+DS PMK+YPLPHM+VQKDLVPDMTNFYEQYKSIEPWLKTK +KDPDVEHLQ  Q R   DG++
Sbjct:   92 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMY 191

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.870e-46
Identity = 75/100 (75.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQV---RQQRDGIH 97
            QDPTLTFRRSCREGICGSCAMNI+G+NTLACLC I+++S+ +KV PLPHMYV KDLVPDMTNFY+QYKSIEPWLKTKT K  D EHLQ    R++ DG++
Sbjct:   75 QDPTLTFRRSCREGICGSCAMNIDGRNTLACLCYIDRNSSSIKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSVEDRKKLDGMY 174

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.640e-45
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQV---RQQRDGIH 97
            QDPTLTFRRSCREGICGSCAMNING+NTLACL  I++ S+  KV PLPHMYV KDLVPDMTNFY+QYKSIEPWLKTKT K  D EHLQ    R++ DG++
Sbjct:   77 QDPTLTFRRSCREGICGSCAMNINGRNTLACLAYIDKSSSSTKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSIADRKKLDGMY 176

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A7S0LTD8_9EUKA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTD8_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 5.870e-44
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQV---RQQRDGIH 97
            QD TLTFRRSCREGICGSCAMNING NTLACLC I  DS PM +YPLPHM + KDLVPD++NFYEQYKSI+PWL+T  EKDP+ EHLQ    R++ DG++
Sbjct:  133 QDQTLTFRRSCREGICGSCAMNINGGNTLACLCNITDDSEPMTIYPLPHMEIVKDLVPDLSNFYEQYKSIQPWLQTDVEKDPNQEHLQSVEDRKKLDGMY 232

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.210e-43
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKT--EKDPDVEHLQVRQQR---DGIH 97
            QDPTLTFRRSCREGICGSCAMNI+G NTLACL  I +   P K+YPLPHMYV KDLVPDMTNFY+QYKSIEPWL+TK    KDP+ EHLQ ++ R   DG++
Sbjct:   91 QDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMY 192

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: B8BYI4_THAPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI4_THAPS)

HSP 1 Score: 144 bits (362), Expect = 5.470e-41
Identity = 73/108 (67.59%), Postives = 82/108 (75.93%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTP-------MKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEK-DPDVEHLQVRQQR---DGIH 97
            QDPTLTFRRSCREGICGSCAMNING+NTLACLC IE            MK+YPLPHMYV KDLVPDM NFYEQY+SIEPWL+TK  K +   E+LQ R+ R   DG++
Sbjct:   44 QDPTLTFRRSCREGICGSCAMNINGRNTLACLCYIEDKEKKGSSGGDVMKIYPLPHMYVLKDLVPDMGNFYEQYRSIEPWLQTKDGKAEGQAEYLQTREDRAKLDGMY 151

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A0G4EC37_VITBC (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EC37_VITBC)

HSP 1 Score: 144 bits (364), Expect = 1.330e-40
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query:    2 DPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDP-DVEHLQVRQQR---DGIH 97
            DP+LTFRRSCREGICGSCAMNINGKN LACL AI Q  +P++V PLPHMYV KDLVPDMTNFY QYKSIEPWLK KT K P   E+LQ ++ R   DG++
Sbjct:   79 DPSLTFRRSCREGICGSCAMNINGKNGLACLTAIPQGPSPIEVQPLPHMYVLKDLVPDMTNFYNQYKSIEPWLKRKTPKAPGQKEYLQSKEDRAKLDGMY 178

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A7S1CY81_CYCTE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY81_CYCTE)

HSP 1 Score: 142 bits (359), Expect = 3.400e-40
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDS-TPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPD-VEHLQVRQQR---DGIH 97
            QDPTLTFRRSCREGICGSCAMNING NTLACL  I+ DS +  K+YPLPHMYV KDLVPD+ NFYEQY+SIEPWL+   EK+P+  E LQ R+ R   DG++
Sbjct:   81 QDPTLTFRRSCREGICGSCAMNINGSNTLACLAYIDADSPSATKIYPLPHMYVVKDLVPDLGNFYEQYRSIEPWLQPSGEKEPEQAEWLQTREDRAKLDGMY 182

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BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Match: A0A8K1FJV0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJV0_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 5.320e-40
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 0

Query:    1 QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHMYVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQVRQQR---DGIH 97
            QDPTLT RRSCREGICGSCAMNI+G NTLACL  I+++S   K+YPLPHMYV +DLVPD+ NFY+QY+SIEPWL++   KD +VEHLQ ++ R   DG++
Sbjct:   85 QDPTLTLRRSCREGICGSCAMNIDGGNTLACLAPIKKNSEVTKIYPLPHMYVIRDLVPDLNNFYDQYRSIEPWLQSDEVKDANVEHLQSKEDRKKLDGMY 184

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig30097.8166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQA7_9PHAE	1.120e-56	86.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
D7FWF5_ECTSI	3.220e-56	86.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A836C854_9STRA	3.870e-46	75.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A835Z536_9STRA	4.640e-45	75.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A7S0LTD8_9EUKA	5.870e-44	72.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
W7U0Z2_9STRA	3.210e-43	71.57	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
B8BYI4_THAPS	5.470e-41	67.59	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A0G4EC37_VITBC	1.330e-40	72.00	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A7S1CY81_CYCTE	3.400e-40	69.61	Succinate dehydrogenase [ubiquinone] iron-sulfur s...	[more]
A0A8K1FJV0_PYTOL	5.320e-40	66.00	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009051	Alpha-helical ferredoxin	GENE3D	1.10.1060.10		coord: 60..99 e-value: 7.6E-6 score: 27.7
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 1..64 e-value: 6.7E-23 score: 80.8
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 1..59 e-value: 2.2E-26 score: 93.9
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 1..94 e-value: 1.7E-33 score: 113.9
None	No IPR available	PANTHER	PTHR11921:SF29	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIAL	coord: 1..93
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 1..93
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 11..19
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 1..50 score: 9.208
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 2..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig30097	contig	H-paniculata_contig30097:349..2758 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig30097.8166.1	mRNA_H-paniculata_contig30097.8166.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig30097 349..2758 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig30097.8166.1 ID=prot_H-paniculata_contig30097.8166.1|Name=mRNA_H-paniculata_contig30097.8166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
QDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEQDSTPMKVYPLPHM
YVQKDLVPDMTNFYEQYKSIEPWLKTKTEKDPDVEHLQVRQQRDGIHTN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009051	Helical_ferredxn
IPR025192	Succ_DH/fum_Rdtase_N
IPR012675	Beta-grasp_dom_sf
IPR004489	Succ_DH/fum_Rdtase_Fe-S
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type
IPR036010	2Fe-2S_ferredoxin-like_sf