mRNA_H-paniculata_contig3007.8163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3007.8163.1 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI) HSP 1 Score: 451 bits (1160), Expect = 3.270e-138 Identity = 314/715 (43.92%), Postives = 382/715 (53.43%), Query Frame = 3
Query: 1473 PKPVLASANPDVKDTSSVISDMEHWASLVSPETYMRRDFEYKVSAATSLPEIFFDFWKAVSNVIDEHRSTREDHSLRKLVMFVAPFCEASDLLAHELKDYETMEHVHQLLQQSARDGGCNDFGTDITHVHYHPNYRFKPRPRETWMASCHAPHPSFSIDVLYKWGGLKSLQSMRAAAEAPEAK-----RAAPPRP---RADVPPEGQ--SERALK-KNEEWATLARSSLESLYNTAACYGEEGA---VEDDPWKNSNAVDTNASGRRGVPESSQEILQATQAWLRGVLKDAVECDSS--------------------------------------VATTNIKKRGR-----------------------------------------------------------------------------ATA--------------------------------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVGGAGGQ--SLESAALRALDE-------AVATSSREQEAQDQDSCLEEEEWDFDEDMVLLPGKELVKRMSNIAQYLVVRSRTAEEVYADVWEVVNDMADRAANHGCSIPTEDYSSSSSPCYSAVMVTPDLATYNAESFFRFQEILNRGLKHLPMEHDISVEAFHPETVSESSPMDHHFLRSPYPTLHICYHGLREEGTALHPAV 3107
P+P+LAS+ PDVKDT+S+IS+M W +V+ +T+ R+ +Y VS TSLPE+FFDFWKAVS ID+HR+T E+ S RK++MFVAPFCE EL+DYETMEH HQLLQQSA DGGC DFGT ITH HYHPNYR +P+P+++ MAS H+PHP+FSIDV+Y+ GGLKSL S+R ++E EA+ ++ P R RAD PE + SE A K + EEWA RSSLE Y AA YG E A V W + + + RGVPESS EILQATQ WL VLKDA D +A +GR ATA T XXXXXXXXXXXXXXXX G +G Q S+E+ L +E AV + E E Q D EE + LLPGKELVKRM NI+QY+V RS+TAEE Y+D WEVV +MADRAA+ GC +PTEDY+SSS+PCY A++VTPDLATY++++F RFQE LNRGLKHLPMEHDISVEAFHPE VS++SP+DH F RSP+PTLH+CYHGLREEGTAL+P V
Sbjct: 42 PQPLLASSKPDVKDTTSIISEMNEWTKVVTFDTHSSRNTKYIVSEGTSLPEVFFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCE-------ELRDYETMEHAHQLLQQSACDGGCQDFGTYITHSHYHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGGLKSLASIRDSSEEAEARQGTRVKSTPARTAPLRADPSPEDRKKSEIARKIRQEEWAAKTRSSLEHAYGMAASYGREEAEHGVGSSMWAHQHVL-----AGRGVPESSVEILQATQEWLTEVLKDAAASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAVMSAGKGRPLYSRTGTGGGLDTERSTSFSPPTAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTASATAVPDAHLSSESGXXXXXXXXXXXXXXXXXPRHHTPSVRFRAATTTVAGGIKQAFAHAAELVTVHXXXXXXXXXXXXXXXXDGGDSDAGASGSQDISVEAQLLETREEDNVNGGVAVEELAAETEGQGGD----EEASGKAAEPPLLPGKELVKRMKNISQYVVARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDLATYSSDTFLRFQETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLREEGTALNPRV 740
BLAST of mRNA_H-paniculata_contig3007.8163.1 vs. uniprot
Match: A0A6H5KUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH9_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.910e-82 Identity = 156/285 (54.74%), Postives = 199/285 (69.82%), Query Frame = 3
Query: 1473 PKPVLASANPDVKDTSSVISDMEHWASLVSPETYMRRDFEYKVSAATSLPEIFFDFWKAVSNVIDEHRSTREDHSLRKLVMFVAPFCEASDLLAHELKDYETMEHVHQLLQQSARDGGCNDFGTDITHVHYHPNYRFKPRPRETWMASCHAPHPSFSIDVLYKWGGLKSLQSMRAAAEAPEAK-----RAAPPRP---RADVPPEGQ--SERALK-KNEEWATLARSSLESLYNTAACYGEEGAVE---DDPWKNSNAVDTNASGRRGVPESSQEILQATQAWLR 2285
P+P+LAS+ PDVKDT+++IS+M+ W +V+ +TY R+ +Y VS TSLPE+ FDFWKAVS ID+HR+T E+ S RK++MFVAPFCE EL+DYETMEH HQLLQQSA DGGC DFGT ITH H+HPNYR +P+P+++ MAS H+PHP+FSIDV+Y+ GGLKSL S+R ++E EA+ ++ P R RAD PE + SE A K + EEWA RSSLE Y AA YG E A + W + + + +GRR VPESS EILQATQ R
Sbjct: 42 PQPLLASSKPDVKDTTNIISEMKEWTKVVTFDTYSSRNTKYIVSEGTSLPEVLFDFWKAVSGAIDQHRATPENRSFRKVLMFVAPFCE-------ELRDYETMEHTHQLLQQSACDGGCQDFGTYITHSHFHPNYRHRPKPKQSRMASRHSPHPAFSIDVVYRKGGLKSLASIRGSSEEAEARQGTRVKSTPARTAPLRADASPEDRKKSEIARKIRREEWAAKTRSSLEHAYGMAASYGREEAEQGAGSSMWAHQHVL----AGRR-VPESSVEILQATQVGRR 314
BLAST of mRNA_H-paniculata_contig3007.8163.1 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE) HSP 1 Score: 235 bits (600), Expect = 6.440e-65 Identity = 110/149 (73.83%), Postives = 132/149 (88.59%), Query Frame = 3
Query: 2670 LLPGKELVKRMSNIAQYLVVRSRTAEEVYADVWEVVNDMADRAANHGCSIPTEDYSSSSSPCYSAVMVTPDLATYNAESFFRFQ---EILNRGLKHLPMEHDISVEAFHPETVSESSPMDHHFLRSPYPTLHICYHGLREEGTALHPAV 3107
LLPGKELVKRM NI+QY+V RS+TAEE Y+D WEVV +MADRAA+ GC +PTEDY+SSS+PCY A++VTPD+ATY++++F RFQ E LNRGLKHLPMEHDISVEAFHPE VS++SP+DH F RSPYPTLH+CYHGLRE+GTAL+P V
Sbjct: 162 LLPGKELVKRMKNISQYIVTRSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDIATYSSDTFLRFQAKVETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPYPTLHVCYHGLREKGTALNPRV 310
BLAST of mRNA_H-paniculata_contig3007.8163.1 vs. uniprot
Match: A0A836CL24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL24_9STRA) HSP 1 Score: 188 bits (478), Expect = 4.680e-45 Identity = 164/558 (29.39%), Postives = 238/558 (42.65%), Query Frame = 3
Query: 1458 CIRWGPKPVLASANPD---VKDTSSVISDMEHW-ASLVSPETYMRRDFEYKVSAATSLPEIFFDFWKAVSNVIDEHRSTREDHSLRKLVMFVAPFCEASDLLAHELKDYETMEHVHQLLQQSARDGGCNDF--GTD---ITHVHYHPNYRFKPRPRETWMASCHAPHPSFSIDVLYKWGGLKSLQSMRAAAEAPEAKRAAPPRPRADVPPEGQSERALKKNEEWATLARSSLESLYNTAACYGEEGAVEDDPWKNSNAVDTNASGRRG---VPESSQEILQATQAWLRGVLKDAVECDSSVATTNIKKRGRATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVGGAGGQSLESAALRALDEAVATSSREQEAQDQDSCLEEEEWDFDEDMVLLPGKELVKRMSNIAQYLVVRSRTAEEVYADVWEVVNDMADRAANHGCSIPTEDYSSSSS----PCYSAVMVTPDLATYNAESFFRFQEILNRGLKHLPMEHDISVEAFHPETVS-ESSPMDHHFLR-SPYPTLHICYHGLR 3077
C P L +ANPD +D V + ME+W +S ++PE + +R + +S T+LP + DFW AV + +D+ R ED S R+L + APFCE L+ Y+TM + +LL+++A +GGC F TD +T H HP +R P P A H+P+PSFS+ YK GG A+A R +PP GQ E L + + + +A G A + GRRG P +E + L A S + ++ RG A AT G +ALR D+A + + CL+ L +V+RM ++A Y V RS TAE+++ADVW+ V ++ RAA GC++P E ++ PCYSAV+V P+ Y +E F RF EIL L +LPME +I++E FHPE V+ D +R SP+P +HIC+ G R
Sbjct: 7 CTTGLPAFDLRAANPDHEVKEDLQGVRNAMENWVSSSMAPEGHSKRHLVHMISEGTTLPAVLADFWHAVGSCVDKQRLAPEDRSFRRLHILTAPFCEP-------LRSYKTMAILDRLLERAAAEGGCQHFMPATDHDGVTVYHNHPRFRNTPPPTVKAYAVRHSPYPSFSLAAHYKAGG---------GAQA-----------RWPLPPAGQ-EPPLDSMMQQPLRRLAPRPMQPDRSATAGSNSAXXXXXXXXGTPQRSKPEGRRGKKQAPRPDKEWAPRVRVALESAYAKAAV---SASDDKVEPRGAAPATSVAVLQATMEWVARVLQEAEDVKETSGYEGTSVSRQLR-------------------GAHAHQSALRPDDDACSPPPA-HPVRSLARCLQNRG---------LVSSTVVRRMRSVAAYSVTRSATAEDLFADVWDAVVELTQRAAEAGCAVPQEHEATLDDAGRPPCYSAVVVAPEFDAYCSEGFRRFGEILRSTLDYLPMEDNITIEVFHPEFVTGHDKERDRSAMRRSPWPAIHICFEGAR 504 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3007.8163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3007.8163.1 >prot_H-paniculata_contig3007.8163.1 ID=prot_H-paniculata_contig3007.8163.1|Name=mRNA_H-paniculata_contig3007.8163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=624bp MEHWASLVSPETYMRRDFEYKVSAATSLPEIFFDFWKAVSNVIDEHRSTRback to top mRNA from alignment at H-paniculata_contig3007:449..16704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3007.8163.1 ID=mRNA_H-paniculata_contig3007.8163.1|Name=mRNA_H-paniculata_contig3007.8163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16256bp|location=Sequence derived from alignment at H-paniculata_contig3007:449..16704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3007:449..16704+ >mRNA_H-paniculata_contig3007.8163.1 ID=mRNA_H-paniculata_contig3007.8163.1|Name=mRNA_H-paniculata_contig3007.8163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3744bp|location=Sequence derived from alignment at H-paniculata_contig3007:449..16704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |