mRNA_H-paniculata_contig30048.8158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30048.8158.1
Unique NamemRNA_H-paniculata_contig30048.8158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30048.8158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30048contigH-paniculata_contig30048:1505..2231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size397
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30048.8158.1prot_H-paniculata_contig30048.8158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30048 1505..2126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.298696-CDS-H-paniculata_contig30048:1504..15751622929923.298696-CDS-H-paniculata_contig30048:1504..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30048 1505..1575 -
1691481071.2971337-CDS-H-paniculata_contig30048:1504..15751691481071.2971337-CDS-H-paniculata_contig30048:1504..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30048 1505..1575 -
1622929923.3217247-CDS-H-paniculata_contig30048:1906..21261622929923.3217247-CDS-H-paniculata_contig30048:1906..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30048 1907..2126 -
1691481071.306717-CDS-H-paniculata_contig30048:1906..21261691481071.306717-CDS-H-paniculata_contig30048:1906..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30048 1907..2126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.3345106-UTR-H-paniculata_contig30048:2126..22311622929923.3345106-UTR-H-paniculata_contig30048:2126..2231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30048 2127..2231 -
1691481071.315751-UTR-H-paniculata_contig30048:2126..22311691481071.315751-UTR-H-paniculata_contig30048:2126..2231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30048 2127..2231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30048.8158.1

>prot_H-paniculata_contig30048.8158.1 ID=prot_H-paniculata_contig30048.8158.1|Name=mRNA_H-paniculata_contig30048.8158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MLNNLSWCLVAFLSCGAALGYAHVDAVVTEENEGSDEPRSGGNVVDLFDD
SLYTRVDMLVLDNPVTFVEFVTRAEDATEAFDFTADELCHLPVGFAR
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mRNA from alignment at H-paniculata_contig30048:1505..2231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30048.8158.1 ID=mRNA_H-paniculata_contig30048.8158.1|Name=mRNA_H-paniculata_contig30048.8158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=727bp|location=Sequence derived from alignment at H-paniculata_contig30048:1505..2231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCCTGGCTGGTATCTTCGGTAGAGAGTAACTCTTGCTGCCTTTGCCA
GTGCCATCGGCTGTGATACAACCGCCAGTTGCGCCTTAGAACTGTGCGTG
TCGTGATGTTGAATAATCTGAGCTGGTGCCTGGTTGCCTTCTTGTCATGT
GGGGCTGCTTTGGGGTATGCTCACGTGGATGCTGTGGTAACGGAGGAAAA
CGAAGGCAGCGATGAACCTCGATCGGGAGGAAACGTGGTGGATTTATTTG
ATGACAGCCTGTACACGCGCGTGGATATGCTAGTGTTGGACAACCCTGTG
ACCTTCGTAGAGTTTGTCACCAGAGGTAGGCGAGAAAAGATTGTACCTTC
TCTTCACATAAGATCGTCGATTCGTTTGTATTGTAGCAGATTGTGGTCCG
TGTGACCCAGCAGCGCACAGAGTTATGGGATATATCAGCTTGTTCCAGCG
TGAAGAACTATACAACACACAGCTAAAAAGCGCGGAAAGAAAGGCAGGAG
CATATGACTTCCTGTGTGTCTGTTGATGTGGAGTTGTTCCGTCGACACTC
AATGATTTCTCTGTTTTGGGTAGAAAATACTTACACCCCATCACCCTCCT
CCCGTGCTGCCTCAACCCTTGCTCGATCGCTCGCGTTATTGTGAATTTGG
GACCAGCTGAGGATGCGACTGAAGCTTTCGACTTTACGGCCGATGAGTTG
TGCCACTTACCGGTTGGCTTCGCGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30048:1505..2231-

>mRNA_H-paniculata_contig30048.8158.1 ID=mRNA_H-paniculata_contig30048.8158.1|Name=mRNA_H-paniculata_contig30048.8158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig30048:1505..2231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAATAATCTGAGCTGGTGCCTGGTTGCCTTCTTGTCATGTGGGGC
TGCTTTGGGGTATGCTCACGTGGATGCTGTGGTAACGGAGGAAAACGAAG
GCAGCGATGAACCTCGATCGGGAGGAAACGTGGTGGATTTATTTGATGAC
AGCCTGTACACGCGCGTGGATATGCTAGTGTTGGACAACCCTGTGACCTT
CGTAGAGTTTGTCACCAGAGATGTTGAATAATCTGAGCTGGTGCCTGGTT
GCCTTCTTGTCATGTGGGGCTGCTTTGGGGTATGCTCACGTGGATGCTGT
GGTAACGGAGGAAAACGAAGGCAGCGATGAACCTCGATCGGGAGGAAACG
TGGTGGATTTATTTGATGACAGCCTGTACACGCGCGTGGATATGCTAGTG
TTGGACAACCCTGTGACCTTCGTAGAGTTTGTCACCAGAGCTGAGGATGC
GACTGAAGCTTTCGACTTTACGGCCGATGAGTTGTGCCACTTACCGGTTG
GCTTCGCGAGGCTGAGGATGCGACTGAAGCTTTCGACTTTACGGCCGATG
AGTTGTGCCACTTACCGGTTGGCTTCGCGAGG
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