mRNA_H-paniculata_contig3004.8155.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Match: D7FGX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX8_ECTSI) HSP 1 Score: 368 bits (945), Expect = 3.800e-115 Identity = 249/506 (49.21%), Postives = 316/506 (62.45%), Query Frame = 1
Query: 7 AKGNMQQCLDELNQMDLPDSFKLKQIRSLLRYMRDVNSLVEHIKTDSGFDGDTTSYLDILCAKEDSELLRRVSHTKVLRQDFDEKRSEWRKQRKSIISAIGAMTARALKFENKERKAVALYALEYYKNIMGRDDGAILGESESTDSLVEQYQRHRDEISKIPMYADNIVKMLNNIRKTVRAYAKFQPGSNAFAQFLDEWWSSVVEFLQQSSIVDAEKNAREVMETLKKLKGKQEDNKKKEMSRLLAKLDAQAGVAPPARRMSQ--LFLEAPDNPEETIA-PSSTWTDDLQAARASRAITPPAVQGTKRQRASEESSCTENARGSAKDLSLYNTQLPTSRSTLSVCSEPRDSISVDGMANLTLDANSNPNSSSSTRRSRAYSVSFDCEGGASSRNSVMSTVSAVSSCWDEGSVSTAGTGATRSSVVSMINDGA---DMPASSGLPRCCSSEDGLDXXXXXXXXXXXHFEAADNLDLGAVDLCATGEDADGKITYGDTDDLRLPSSLR 1506
+G MQQC+ E+ LP FKLKQ+RSL+RYMR+V+ LV I ++SGF+ D T+YL+ILC KE+SEL RRVS T+VL+QDFDEKR EWR+ +K++I+AI M+ARALKFE E+K +AL+A+++YKN+M D+GAI GESESTD L++QY+RHRDEISKIP YAD+I+KML +IR+TV A AK QPGSNAF QFLDEWW+SVVEFL+QS IVDAE+NAREVM+TLKKLKGKQE+ KK+EMSRL+ KL+AQ PP S+ + L+ NPE+T+ DD + + T G A +E S E G D+S ++ P SRS S+ PR ++ G R R ++ S + SV S WD GS T GT DG D+ A+SGLP D XXXXXXXX FE AD+LDLGAV LCA ADG+ TY DT R P ++R
Sbjct: 7 TRGTMQQCIAEIEDSALPQDFKLKQVRSLVRYMREVDGLVRGINSESGFEADCTAYLEILCTKEESELNRRVSCTRVLKQDFDEKRREWRRTKKNVINAISEMSARALKFECSEKKTIALHAIQFYKNVMANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVRWNEKARPDDEEGSVLEEGDTEHDYDG--HDEAVDELS--ELGHGGVDDMSQWSECSP-SRSEASLT--PRRQLAERG-------------------RERGFTTSMATIPDNAGNMSVAS--------WDVGSEPTLGT------------DGGTDQDIAAASGLPE--------DESEXXXXXXXXEFEVADSLDLGAVALCAVETGADGQQTYQDT--ARTPQAMR 456
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Match: D7FGW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW7_ECTSI) HSP 1 Score: 345 bits (886), Expect = 2.380e-110 Identity = 172/252 (68.25%), Postives = 219/252 (86.90%), Query Frame = 1
Query: 13 GNMQQCLDELNQMDLPDSFKLKQIRSLLRYMRDVNSLVEHIKTDSGFDGDTTSYLDILCAKEDSELLRRVSHTKVLRQDFDEKRSEWRKQRKSIISAIGAMTARALKFENKERKAVALYALEYYKNIMGRDDGAILGESESTDSLVEQYQRHRDEISKIPMYADNIVKMLNNIRKTVRAYAKFQPGSNAFAQFLDEWWSSVVEFLQQSSIVDAEKNAREVMETLKKLKGKQEDNKKKEMSRLLAKLDAQAGV 768
G M +C+ EL + LPD+FKL Q+RSL+RY+++V L I +SGF+ DT SYL+ILCAKED +L+R+VS T+VLRQD+DEKR EW++Q+KS+I+AIG+MTAR L+FE+KERK +AL+AL +YK+IM DDGAI GESESTDSL+EQY+RHR EISKIPMYAD+I+KML +IRKTVRA +K QPG+N+FAQFL+EWW+SVV+FLQQSSIV+AEKNAREVM+TLKKLKGKQE+ KK+E+SRLL+KLD A +
Sbjct: 16 GTMSECIAELQESSLPDAFKLAQVRSLVRYIKEVGLLQRRIIDESGFEADTNSYLEILCAKEDGDLMRKVSSTRVLRQDYDEKRLEWKRQKKSVINAIGSMTARTLRFEDKERKTIALHALAFYKSIMATDDGAIPGESESTDSLMEQYKRHRSEISKIPMYADSILKMLKDIRKTVRASSKLQPGTNSFAQFLEEWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLDDNASI 267
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Match: A0A6H5JA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA20_9PHAE) HSP 1 Score: 322 bits (826), Expect = 4.840e-95 Identity = 263/641 (41.03%), Postives = 340/641 (53.04%), Query Frame = 1
Query: 13 GNMQQCLDELNQMDLPDSFKLKQIRSLLRYMRDVNSLVEHIKTDSGFDGDTTSYLDILCAKEDSELLRRVSHTKVLRQ---------------DFDEKRSEWRKQRKSIISAIGAMTARALKFENKERKAVALYALEYYKNIMGRDDGAILGESESTDSLVEQYQRHRDEISKIPMYADNIVKMLNNIRKTVRAYAKFQPGSNAFAQFLDE--------------------------WWSSVVEFLQQSSIVDAEKNAREVMETLKKLKGKQEDNKKKEMSRLLAKLDAQAGVAPPARRMSQLFLEAPDNPEETIAPSSTWTDDLQAARASRAITPPA---VQGTKRQRASEESSCTENARGSAKDLSLYNTQLPTSRSTLSVCSEPRDSIS------------------VDGMANLTLDANSNPNS---SSSTRRSRAYSV-----------------------SFDCE----------------------GGASSRNSVM------------STVSAVSSC-----------------WDEGSVSTAGTGATRSSVVSMINDGADMPAS-----SGLPRCCSSEDGLDXXXXXXXXXXXHFEAADNLDLGAVDLCATGEDADGKITYGDTDDLRLPSSL 1503
G M +C+ EL + LPD+FKL Q+RSL+RY+++V L I +SGF+ DT SYL+ILCAKED +L+R+VS T+VLRQ D+DEKR EW+KQ+KS+I+AIG+MTAR L+FE+KERK +AL+AL +YK+IM DDGAI GESESTD+L+EQY+RHR EISKIPMYAD I+KML +IRKTVRA +K QPG N+FAQFL+E WW+SVV+FLQQSSIV+AEKNAREVM+TLKKLKGKQE+ KK+E+SRLL+KLD A + + + +L P+ +P S D+ + + +IT QG KR+R + S E+ S + S + + +PR V +L + A+ ++ SSS RS A +V S D E GG SS + M S + +SC W+E S TAGT D A+M A SG+P XXXXXXXXX FEAADNLDLGAVDLCATG ADG+ TY D D+LRLP+ +
Sbjct: 16 GTMSECIAELQESSLPDAFKLAQVRSLVRYIKEVGLLQRRIIDESGFEADTNSYLEILCAKEDGDLMRKVSSTRVLRQARDSKGQHRQTEPIKDYDEKRLEWKKQKKSVINAIGSMTARTLRFEDKERKTIALHALAFYKSIMATDDGAIPGESESTDALIEQYKRHRSEISKIPMYADRILKMLKDIRKTVRASSKLQPGPNSFAQFLEEARPAPMFNRSLFVTLLPKCCSVASRKWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLDDNASID---QHLPTGYLPEELPPKAAGSPPS---DESKTPEETSSITVSGGVQQQGMKRER--DSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDPRQEXXXXXXXXXXXXXXXXXXQRVSFTDHLEVSASGGTSTMARSSSIVRSTALTVATGXXXXXXXXSCGRTKPPALTWSADREDACGSRVGGNSGGINPLKSPASGGLSSPGTRMLGIGGEGGSGFPSRKNTHASCLGKTKHPLDFLYARKVSWEEESQGTAGT-----------MDTAEMHAQHAVSFSGIPDSXXXXXXXXXXXXXXXXXEL-FEAADNLDLGAVDLCATGNGADGQTTYKDQDELRLPAKV 636
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Match: A0A6H5JCK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK0_9PHAE) HSP 1 Score: 210 bits (535), Expect = 5.840e-57 Identity = 172/376 (45.74%), Postives = 211/376 (56.12%), Query Frame = 1
Query: 394 MGRDDGAILGESESTDSLVEQYQRHRDEISKIPMYADNIVKMLNNIRKTVRAYAKFQPGSNAFAQFLDEWWSSVVEFLQQSSIVDAEKNAREVMETLKKLKGKQEDNKKKEMSRLLAKLDAQAGVAPPARRMSQ--LFLEAPDNPEETIAPSSTWTDDLQAARASRAITPPAVQGTKRQRASEESSCTENARGSAKDLSLYNTQLPTSRSTLSVCSEPRDSISVDGMANLTLDANSNPNSSSSTRRSRAYSVSFDCEGGASSRNSVMSTVSAVSSCWDEGSVSTAGTGATRSSVVSMINDGA---DMPASSGLPRCCSSEDGLDXXXXXXXXXXXHFEAADNLDLGAVDLCATGEDADGKITYGDTDDLRLPSSLR 1506
M D+GAI GESESTD L++QY+RHRDEISKIP YAD+I+KML +IR+TV A AK QPGSNAF QFLDEWW+SVVEFL+QS IVDAE+NAREVM+TLKKLKGKQE+ KK+EMSRL+ KL+AQ PP S+ + L+ NPE+T+ + D + T G A +E S E G D+S ++ P SRS S+ PR ++ G R R ++ S + SV S WD S T GT DG D+ A+SGLP ED DXXXXXXX FE AD+LDLGAV LCA ADG+ TY DT R P ++R
Sbjct: 1 MANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVRWNEKARPDDEEGSVLEGDTEHDYDG--HDEAVDELS--ELGHGGLDDMSQWSESSP-SRSEASLT--PRRQLAERG-------------------RERGFTTSMATIPDNTGNTSVAS--------WDVRSEPTLGT------------DGGTDQDIAAASGLP-----EDESDXXXXXXX----EFEVADSLDLGAVALCAVQTGADGQQTYQDT--ARTPQAMR 319
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Match: D7FGW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW6_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.380e-6 Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 1387 FEAADNLDLGAVDLCATGEDADGKITYGDTDDLRLPSSL 1503
FEAADNLDLGAVDLCATG+ ADG+ TY D D++RLP+ +
Sbjct: 140 FEAADNLDLGAVDLCATGKGADGQTTYKDQDEVRLPAKV 178 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3004.8155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3004.8155.1 >prot_H-paniculata_contig3004.8155.1 ID=prot_H-paniculata_contig3004.8155.1|Name=mRNA_H-paniculata_contig3004.8155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=590bp MQQCLDELNQMDLPDSFKLKQIRSLLRYMRDVNSLVEHIKTDSGFDGDTTback to top mRNA from alignment at H-paniculata_contig3004:1310..13926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3004.8155.1 ID=mRNA_H-paniculata_contig3004.8155.1|Name=mRNA_H-paniculata_contig3004.8155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12617bp|location=Sequence derived from alignment at H-paniculata_contig3004:1310..13926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3004:1310..13926+ >mRNA_H-paniculata_contig3004.8155.1 ID=mRNA_H-paniculata_contig3004.8155.1|Name=mRNA_H-paniculata_contig3004.8155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig3004:1310..13926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |