prot_H-paniculata_contig30021.8153.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30021.8153.1
Unique Nameprot_H-paniculata_contig30021.8153.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length136
Homology
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BLAST of mRNA_H-paniculata_contig30021.8153.1 vs. uniprot
Match: A0A2U1QGS1_ARTAN (Reverse transcriptase domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QGS1_ARTAN)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-7
Identity = 40/119 (33.61%), Postives = 66/119 (55.46%), Query Frame = 0 
Query:   22 LSERQYGVAVSGGAELM------GLRAKTHHQLGHWLIALDCTNVFNSVKWATILEEVAIRTPRLTPFVVNCYGEKPADINIQMGTGERRKISSNTGIHQGDGLGPALLCMLVGPILRK 134
            LS+ Q+GV VSGGAE +      GL ++ H+     ++ +D +N FN V  + +L EV +R P ++ +V   YG+       ++  G+   I S TG+ QGD LGP L  +++  ++ K
Sbjct:   12 LSDFQFGVGVSGGAEAVLHSVNRGL-SEYHNDGSFAMLTVDFSNAFNLVDRSALLYEVRVRCPSISLWVDFLYGQA-----ARLYIGDTH-IWSATGVQQGDPLGPLLFALVLHRLVHK 123
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BLAST of mRNA_H-paniculata_contig30021.8153.1 vs. uniprot
Match: A0A699HZ53_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZ53_TANCI)

HSP 1 Score: 57.0 bits (136), Expect = 8.790e-7
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 0 
Query:   22 LSERQYGVAVSGGAELM-----GLRAKTHHQLGHWLIALDCTNVFNSVKWATILEEVAIRTPRLTPFVVNCYGEKPADINIQMGTGERRKISSNTGIHQGDGLGPALLCMLVGPILRK 134
            LS+ Q+GV VSGGAE +      + ++ H+     ++ +DC+N FN V  + +L EV+ + P ++ +V   YG+      + +G      I S T + Q D LGP    +++ P L K
Sbjct:  260 LSDFQFGVGVSGGAEAILHSVNRVLSEYHNDGSLAMLIVDCSNAFNLVDRSALLHEVSAKCPSISLWVDFLYGKAS---RLYIGD---THIWSATEVQQCDPLGPLFFALILHPFLHK 371
[Close]
BLAST of mRNA_H-paniculata_contig30021.8153.1 vs. uniprot
Match: A0A6L2L3L9_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L3L9_TANCI)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-5
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 0 
Query:   22 LSERQYGVAVSGGAELM-----GLRAKTHHQLGHWLIALDCTNVFNSVKWATILEEVAIRTPRLTPFVVNCYGEKPADINIQMGTGERRKISSNTGIHQGDGLGPALLCMLVGPILRK 134
            LS+ Q+GV VSGGAE +      + ++ H+     ++ +D +N FN V  + +L EV ++ P ++ +V   YG+      + +G      I S TG+ QGD L P L  +++   L K
Sbjct:  392 LSDFQFGVRVSGGAEAILHSVNRVLSEYHNDGSLAMLIMDFSNAFNLVDRSALLHEVRVKCPSISLWVDLLYGQAS---RLYIGD---THIWSATGVQQGDPLRPLLFALILHLQLHK 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30021.8153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2U1QGS1_ARTAN1.060e-733.61Reverse transcriptase domain-containing protein n=... [more]
A0A699HZ53_TANCI8.790e-731.36Putative reverse transcriptase domain-containing p... [more]
A0A6L2L3L9_TANCI1.070e-531.36Putative reverse transcriptase domain-containing p... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 6..134
e-value: 1.1E-7
score: 31.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30021contigH-paniculata_contig30021:2128..2535 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30021.8153.1mRNA_H-paniculata_contig30021.8153.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30021 2104..2535 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30021.8153.1 ID=prot_H-paniculata_contig30021.8153.1|Name=mRNA_H-paniculata_contig30021.8153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MRRTLAAVVVRQYRPKLEEVNLSERQYGVAVSGGAELMGLRAKTHHQLGH
WLIALDCTNVFNSVKWATILEEVAIRTPRLTPFVVNCYGEKPADINIQMG
TGERRKISSNTGIHQGDGLGPALLCMLVGPILRKC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom