mRNA_H-paniculata_contig30002.8150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30002.8150.1
Unique NamemRNA_H-paniculata_contig30002.8150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30002.8150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30002contigH-paniculata_contig30002:372..1399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30002.8150.1prot_H-paniculata_contig30002.8150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30002 383..1392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.2988715-UTR-H-paniculata_contig30002:371..3821622929922.2988715-UTR-H-paniculata_contig30002:371..382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30002 372..382 -
1691481070.9874747-UTR-H-paniculata_contig30002:371..3821691481070.9874747-UTR-H-paniculata_contig30002:371..382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30002 372..382 -
1622929922.3560534-UTR-H-paniculata_contig30002:1392..13991622929922.3560534-UTR-H-paniculata_contig30002:1392..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30002 1393..1399 -
1691481071.0200615-UTR-H-paniculata_contig30002:1392..13991691481071.0200615-UTR-H-paniculata_contig30002:1392..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30002 1393..1399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.3194537-CDS-H-paniculata_contig30002:382..6841622929922.3194537-CDS-H-paniculata_contig30002:382..684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30002 383..684 -
1691481070.9996817-CDS-H-paniculata_contig30002:382..6841691481070.9996817-CDS-H-paniculata_contig30002:382..684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30002 383..684 -
1622929922.3352804-CDS-H-paniculata_contig30002:1319..13921622929922.3352804-CDS-H-paniculata_contig30002:1319..1392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30002 1320..1392 -
1691481071.010405-CDS-H-paniculata_contig30002:1319..13921691481071.010405-CDS-H-paniculata_contig30002:1319..1392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30002 1320..1392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30002.8150.1

>prot_H-paniculata_contig30002.8150.1 ID=prot_H-paniculata_contig30002.8150.1|Name=mRNA_H-paniculata_contig30002.8150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MQQVVGVDGIQQRERGREHCRRDGAQGERGAILHHQHHSSGCKGKQECEE
EDHLRLSKTQGALEDVFRSVVQAGPGYPRCPANIQGRERCPSDSRRDRVG
HSVGTVSGHGGTLGIGDILFGINS*
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mRNA from alignment at H-paniculata_contig30002:372..1399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30002.8150.1 ID=mRNA_H-paniculata_contig30002.8150.1|Name=mRNA_H-paniculata_contig30002.8150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-paniculata_contig30002:372..1399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCAGCATGCAGCAGGTGGTGGGGGTTGATGGCATCCAGCAGCGAGAAC
GAGGACGAGAACATTGCCGTAGAGACGGAGGTGAACGTTTCAAAGTGTGT
AAGGTGCCCCCTAGTGTAACAGGGTGTGGGGGGTACTTTGGTGTGTGGGG
CTTTGGTGGAGACGATATTCGTTTTGTTGCGACATTCGGTCAACGGCGAG
GAAGGGTGGGGGGGGGGGGGGGGAGAGAGCTGAGGTAGCTGGTTTTTCAT
CTACACATGTAATTTTTAATCATGTACCACTTGGTGGTCAAACCTCCCGG
GGAGGGAGGGGTAGTTGACTTGGATTGAGTATCGGATCGAGCCTTGTTTG
TCCTCACTCCTTCCATTGTTTTGTTGTGAGTTGCGTTCTGGTGTAAACCA
TGTGTGCGCAGGATATATTGACGAGAGGATAGCCAAGCTCACGTAATGCG
CCACGCTCTCAGGGTATAGAAACGAGCATGGACACGTTACGATAGGTAGT
AGTCGCTTCCCACGAGGAGACTTGCTTATTCAGGGACCTTGTTTCGTTAT
GTAGATGTTTTTTATTCTTGTTTCGCTTTGCGTGTGTCATCATCCATCCT
TCGTTTCACTATTTTCACCACCATAGTATCACTGAAGAGTCGTCCAATCA
GACAGCGTTCTCATTCGTACCCCGACCTAACCTCACTGTCCCTCCTCCAT
TTCGTGAACGCGCAGCTCAAGGTGAACGCGGGGCGATTCTCCATCACCAG
CATCATTCCTCCGGGTGTAAAGGGAAACAAGAATGCGAAGAGGAAGACCA
CCTACGTCTCTCCAAGACCCAAGGGGCACTGGAAGACGTATTTCGGTCGG
TTGTTCAAGCAGGGCCGGGATATCCTAGATGCCCAGCTAATATCCAGGGA
CGGGAGCGTTGTCCTAGCGACTCCCGAAGGGATCGTGTTGGACATAGTGT
GGGCACCGTGAGCGGACATGGTGGAACCTTAGGGATTGGGGACATTCTGT
TTGGAATAAATAGTTGATAGTTTTAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig30002:372..1399-

>mRNA_H-paniculata_contig30002.8150.1 ID=mRNA_H-paniculata_contig30002.8150.1|Name=mRNA_H-paniculata_contig30002.8150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig30002:372..1399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAGGTGGTGGGGGTTGATGGCATCCAGCAGCGAGAACGAGGACG
AGAACATTGCCGTAGAGACGGAGATGCAGCAGGTGGTGGGGGTTGATGGC
ATCCAGCAGCGAGAACGAGGACGAGAACATTGCCGTAGAGACGGAGCTCA
AGGTGAACGCGGGGCGATTCTCCATCACCAGCATCATTCCTCCGGGTGTA
AAGGGAAACAAGAATGCGAAGAGGAAGACCACCTACGTCTCTCCAAGACC
CAAGGGGCACTGGAAGACGTATTTCGGTCGGTTGTTCAAGCAGGGCCGGG
ATATCCTAGATGCCCAGCTAATATCCAGGGACGGGAGCGTTGTCCTAGCG
ACTCCCGAAGGGATCGTGTTGGACATAGTGTGGGCACCGTGAGCGGACAT
GGTGGAACCTTAGGGATTGGGGACATTCTGTTTGGAATAAATAGTTGACT
CAAGGTGAACGCGGGGCGATTCTCCATCACCAGCATCATTCCTCCGGGTG
TAAAGGGAAACAAGAATGCGAAGAGGAAGACCACCTACGTCTCTCCAAGA
CCCAAGGGGCACTGGAAGACGTATTTCGGTCGGTTGTTCAAGCAGGGCCG
GGATATCCTAGATGCCCAGCTAATATCCAGGGACGGGAGCGTTGTCCTAG
CGACTCCCGAAGGGATCGTGTTGGACATAGTGTGGGCACCGTGAGCGGAC
ATGGTGGAACCTTAGGGATTGGGGACATTCTGTTTGGAATAAATAGTTGA
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