mRNA_H-paniculata_contig30.8146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30.8146.1
Unique NamemRNA_H-paniculata_contig30.8146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30.8146.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.990e-42
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 IGYLHCSWNSAQAKLYCAEDLCRITRSSPESQGIFDIQFLRENLMKAEIAHLDKQGNLVQGKRASRRQKRGMPQTVTVTWKDAETQEETTAPLALFGLGKKV 306
            +GY HCS +S Q++LYCAED+CR +R S E++   + QFLRE+L+KAE+AHLDK+G LV+GKRASRRQKRGM QT TVTWKDAETQ+ETT P+A +GLG+KV
Sbjct:    1 MGYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKV 102
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BLAST of mRNA_H-paniculata_contig30.8146.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.230e-41
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    1 IGYLHCSWNSAQAKLYCAEDLCRITRSSPESQGIFDIQFLRENLMKAEIAHLDKQGNLVQGKRASRRQKRGMPQTVTVTWKDAETQEETTAPLALFGLGKKV 306
            IGY HCS +S Q++LYCAED+CR +R S E++   + QFLRE+L+KAE+AHLDK G LV+GKRASRRQKRGM QT TVTWKDAETQ+ETT P+A +GLG+KV
Sbjct:   49 IGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKV 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30.8146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT18_ECTSI3.990e-4267.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y3_9PHAE3.230e-4168.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30contigH-paniculata_contig30:67489..68338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.7685425-CDS-H-paniculata_contig30:67488..675861622929921.7685425-CDS-H-paniculata_contig30:67488..67586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30 67489..67586 +
1691481070.7937312-CDS-H-paniculata_contig30:67488..675861691481070.7937312-CDS-H-paniculata_contig30:67488..67586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30 67489..67586 +
1622929921.7851584-CDS-H-paniculata_contig30:68130..683381622929921.7851584-CDS-H-paniculata_contig30:68130..68338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30 68131..68338 +
1691481070.8069568-CDS-H-paniculata_contig30:68130..683381691481070.8069568-CDS-H-paniculata_contig30:68130..68338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30 68131..68338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30.8146.1prot_H-paniculata_contig30.8146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30 67489..68338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30.8146.1

>prot_H-paniculata_contig30.8146.1 ID=prot_H-paniculata_contig30.8146.1|Name=mRNA_H-paniculata_contig30.8146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
IGYLHCSWNSAQAKLYCAEDLCRITRSSPESQGIFDIQFLRENLMKAEIA
HLDKQGNLVQGKRASRRQKRGMPQTVTVTWKDAETQEETTAPLALFGLGK
KV
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mRNA from alignment at H-paniculata_contig30:67489..68338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30.8146.1 ID=mRNA_H-paniculata_contig30.8146.1|Name=mRNA_H-paniculata_contig30.8146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig30:67489..68338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGTTATCTGCATTGTAGCTGGAACAGCGCGCAAGCGAAATTGTATTG
TGCGGAGGACCTGTGTAGGATTACGCGGAGCTCGCCGGAAAGCCAAGGGT
GAGTGTGTTGTGTGGAAGAAAAATGAATTAAGCGGTTCACTCGTCTGCAA
CACAAACAGGAACATATTTTGTATTATTGGCACTGGGACATCGGGGGTGT
TTTCTCCTGTATTTTTAGGGACAGAGTCAGCCAGTATTGGTCCGCGTTGC
CCCATTTGCCCTACCCACCTTTTCAACAGACAGTAAAATATGTTCAGATA
GGAGCGTATTTTGGTTCGGGCACGCAATGCTGTCGCGAGAAAGGGCGTCT
TGTCTCCTTCGGTAAGAAAGCAACAAGAGTCTGTTCGATAGCACTGCCAA
CCTTTCATCTTTAGTCATCGGTTGTATCCGACTAATAGACTTCACTTTTT
TTTTAATACAAATTGTGAAATTGTTTGTTGGGTGTTGTCTTTCTTTGGGG
TCTCTTTGTGGATTTGTGAGGTCTGTGGGGCATACTCCACGTTGTTGCCT
GTCCCTACCTAACCCTCTACATACTTATTTGCTATCTTCCGTCTTTCCTT
GTGGACGTGTGTGATGGCGCTGTGGGATTTGCCCGTGTACAGGATCTTCG
ACATCCAATTTTTGCGAGAAAACTTGATGAAGGCGGAGATAGCACACCTA
GACAAACAGGGTAACCTGGTTCAGGGAAAGCGGGCCAGCAGACGGCAAAA
GAGAGGCATGCCTCAGACCGTCACAGTCACATGGAAGGATGCAGAGACGC
AAGAAGAAACGACTGCGCCCTTGGCGTTGTTCGGTCTTGGTAAAAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig30:67489..68338+

>mRNA_H-paniculata_contig30.8146.1 ID=mRNA_H-paniculata_contig30.8146.1|Name=mRNA_H-paniculata_contig30.8146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig30:67489..68338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGTTATCTGCATTGTAGCTGGAACAGCGCGCAAGCGAAATTGTATTG
TGCGGAGGACCTGTGTAGGATTACGCGGAGCTCGCCGGAAAGCCAAGGAT
CGGTTATCTGCATTGTAGCTGGAACAGCGCGCAAGCGAAATTGTATTGTG
CGGAGGACCTGTGTAGGATTACGCGGAGCTCGCCGGAAAGCCAAGGGATC
TTCGACATCCAATTTTTGCGAGAAAACTTGATGAAGGCGGAGATAGCACA
CCTAGACAAACAGGGTAACCTGGTTCAGGGAAAGCGGGCCAGCAGACGGC
AAAAGAGAGGCATGCCTCAGACCGTCACAGTCACATGGAAGGATGCAGAG
ACGCAAGAAGAAACGACTGCGCCCTTGGCGTTGTTCGGTCTTGGTAAAAA
GGTAGATCTTCGACATCCAATTTTTGCGAGAAAACTTGATGAAGGCGGAG
ATAGCACACCTAGACAAACAGGGTAACCTGGTTCAGGGAAAGCGGGCCAG
CAGACGGCAAAAGAGAGGCATGCCTCAGACCGTCACAGTCACATGGAAGG
ATGCAGAGACGCAAGAAGAAACGACTGCGCCCTTGGCGTTGTTCGGTCTT
GGTAAAAAGGTA
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