prot_H-paniculata_contig30.8145.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30.8145.1
Unique Nameprot_H-paniculata_contig30.8145.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length201
Homology
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 3.930e-65
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 0
Query:   11 MPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKSKPGGGRGD 129
            MPIILLHDAEGGIITVE+KNGEVCRGVLDEAEDSMNLVLK+ + T++RGK   LQQLYIRGNQIVFCIVP+MLRNAPMFARIKQ RKYKGHPP+LA+EGAKGQRAAIIRK+  GGGRGD
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRKAAMGGGRGD 119          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.960e-64
Identity = 97/111 (87.39%), Postives = 106/111 (95.50%), Query Frame = 0
Query:   11 MPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKS 121
            MPIILLHDAEGGIITVE+KNGEVCRGVLDEAEDSMNLVLK+ + T++RGK   LQQLYIRGNQIVFCIVP+MLRNAPMFARIKQWRKYKGHPP+LA+EGAKGQRAAIIRK+
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRKA 111          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.740e-52
Identity = 81/121 (66.94%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKS 121
            MSVTGNAGIGMP+ILLHDAEG + TVE+K+GEV RG+LDEAED+MN+++K+++ TD+RGK   L ++YIRG+QIV  IVPDMLR A MF RI  WRKYKG+PP LA+    GQRAAI+RK+
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKA 121          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.720e-44
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKSK 122
            MSVTG  G+G+PII+LHDAEG I+TVE+KNGE  RG+LDEAED+MN +L +V  T   GK  ++ QLY+RG+QI F +VPD L+  PMF RI+ WRKYKG+PP L +   +GQ AAIIRK++
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRKAQ 122          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 149 bits (377), Expect = 5.460e-43
Identity = 71/121 (58.68%), Postives = 96/121 (79.34%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKS 121
            MSVTG  G+G+PIILLHDAEGGIITVE + GE+ RG+LDEAED+MNL+L++V  T++ GK  +++ +YI+G+Q+ F I+PDML+ APMF RIK W+KY G+ P L A G +GQ A I +K+
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQKT 120          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A7S4N4C1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N4C1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.970e-40
Identity = 73/132 (55.30%), Postives = 96/132 (72.73%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKSKPGGGRGDFGG 132
            MSV GN  +G+PI+LLHDAEGGI+TVE + GE+ RG+L EAED MNL +K  I+ D  G  +++ Q+Y+RG +IVF ++P+MLR+APMF RIK WRK+ G PP      A GQ AAI+RK++    RG FGG
Sbjct:    1 MSVVGNNRVGIPIVLLHDAEGGIVTVETRKGEIVRGMLFEAEDMMNLYIKNAIVHDENGTKRKVDQMYLRGPEIVFIVLPNMLRHAPMFKRIKHWRKHGGAPPE-GVGAAVGQAAAILRKAQERR-RGGFGG 130          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A7S4VE27_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VE27_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.410e-39
Identity = 76/137 (55.47%), Postives = 100/137 (72.99%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKS----KPG--GGRGDFG 131
            MSV GN  +G+PI+LLHDAEG +++VE KNGE+ RG+L EAED MNL LK+ ++ + +G  + + Q+Y+RG++IVF  +PDMLR+APMF RIK WRK+ G PP  AA G   Q AAI+RK+    K G  GGRG FG
Sbjct:    1 MSVVGNNRVGIPIVLLHDAEGSVVSVETKNGELIRGLLFEAEDMMNLYLKKAVVLNPQGVKRSVDQVYVRGSEIVFISLPDMLRHAPMFQRIKHWRKHGGAPPEGAAVG---QAAAILRKATERRKGGFAGGRGGFG 134          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.650e-39
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILA-----AEGAKGQRAAIIRKSK 122
            M+VTG  G+G+P ILLHD EG  +++EMK+GE+ RG L+E ED+MN VLKE + TD+ G    ++ +Y+RG+QI+F + PDML++APMF R+K W+K+KG  P L        G +GQ AAIIRK+K
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKAK 127          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.860e-39
Identity = 66/122 (54.10%), Postives = 92/122 (75.41%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGAKGQRAAIIRKSK 122
            MSVTG  GIG+PIIL+HD EG I+TVE KNG++ RG LDE ED+MN ++K+V  T   GK  +++ ++IRG+QI+F + P ML+ APMF R++ WRK++G+  I   E A+GQ AAIIRK++
Sbjct:   18 MSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGN--ISKGEEARGQAAAIIRKAQ 137          
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Match: A0A067C915_SAPPC (Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C915_SAPPC)

HSP 1 Score: 135 bits (341), Expect = 1.570e-37
Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = 0
Query:    1 MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLKEVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPILAAEGA---------KGQRAAIIRK 120
            M+VTG  G+G+P ILLHD EG I+TVE+KNG++ RG LDE ED+MN VLK+   TD+RG      Q+Y+RG+QI+F I PDML++AP F R+K W+K+KG  P L   G          +G   A++RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKLWKKHKGSIPALGLGGGAHIGLGNSQRGPTGAMVRK 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30.8145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT20_ECTSI3.930e-6585.71Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A6H5L429_9PHAE1.960e-6487.39Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835YVP5_9STRA3.740e-5266.94Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA1.720e-4459.84Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC5.460e-4358.68Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S4N4C1_9STRA3.970e-4055.30Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S4VE27_9STRA1.410e-3955.47Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Dity... [more]
F0W7K3_9STRA1.650e-3951.97Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
A0A7S3K1R1_9STRA1.860e-3954.10Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A067C915_SAPPC1.570e-3750.39Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Sapr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..79
e-value: 9.8E-10
score: 48.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..78
e-value: 4.6E-14
score: 51.9
NoneNo IPR availableGENE3D2.30.30.100coord: 7..90
e-value: 2.3E-26
score: 93.1
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..114
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..114
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30contigH-paniculata_contig30:60516..63821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30.8145.1mRNA_H-paniculata_contig30.8145.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30 60434..64730 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30.8145.1 ID=prot_H-paniculata_contig30.8145.1|Name=mRNA_H-paniculata_contig30.8145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MSVTGNAGIGMPIILLHDAEGGIITVEMKNGEVCRGVLDEAEDSMNLVLK
EVIITDLRGKNKRLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKG
HPPILAAEGAKGQRAAIIRKSKPGGGRGDFGGPPGGRGDGGRGDGGRGDG
GRGRGSGGFGGSGAGAYGPAGGGGGGGFGGGRGGGSFGGGAGRGASPFAR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf