prot_H-paniculata_contig11272.814.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11272.814.1
Unique Nameprot_H-paniculata_contig11272.814.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length159
Homology
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 130 bits (326), Expect = 1.080e-32
Identity = 63/161 (39.13%), Postives = 104/161 (64.60%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV  A+L+AP++ ++F++ P  F   S + +  V RL+KSLY LKQSGRNWN  ++++L+  G   +  D C+Y  +   GE  +++ +++DDL+IA    +K+ +FK N++  FRMKDLG +S  LGI  ++   NG I ++Q  Y++++L R+G   C
Sbjct:  254 MDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDC 410          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.550e-32
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPP---KFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDVD AYL + +EEK+++K PP   K+ P   ++  V RLRKSLY LKQSGRNW+  I+ +  G GL  S  D CLY      GE  L++ +Y+DDL+I    R   D+FK +I + F MKDL  L  +LG+ ++R+R N T+ ISQ  Y+  +L ++G   C
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADC 463          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.320e-32
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFS---PFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDVD AYL + +EEK++VK PP +    P   ++  V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+IAG  R+ VD+FK  I +   MKDL  L  +LG+ ++R+R    + ISQ +Y+  +L ++    C
Sbjct:   84 MDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADC 243          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.510e-32
Identity = 70/161 (43.48%), Postives = 98/161 (60.87%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV+ AYL + +EEK++VK PP +  + S     V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+I    RE V +FKH I + F MKDL  L  +LG+ ++RDR    + ISQ +Y+  +L ++    C
Sbjct:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADC 243          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 129 bits (324), Expect = 6.690e-32
Identity = 62/161 (38.51%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV  A+L+ P++ ++F++ P  F   S + +  V RL+KSLY LKQSGRNWN  ++++L+  G   +  D C+Y  +   GE  +++ +++DDL+IA    +K+ +FK N++  FRMKDLG +S  LGI  ++   NG I ++Q  Y++++L R+G   C
Sbjct:  279 MDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDC 435          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.940e-31
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV+ AYL + +EEK++VK P  +  + S     V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+I    RE V++FKH I + F MKDL  L  +LG+ ++RDR    + ISQ +Y+  +L ++G   C
Sbjct:  524 MDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADC 683          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT)

HSP 1 Score: 125 bits (314), Expect = 1.160e-30
Identity = 62/161 (38.51%), Postives = 102/161 (63.35%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV  A+L+AP+  ++F++ P  F   S + +  V RL+KSLY LKQSGRN N  ++++L+  G   +  D C+Y  +   GE  +++ +++DDL+IA    +K+ +FK N++  FRMKDLG +S  LGI  ++   NG I ++Q  Y++++L R+G   C
Sbjct:  238 MDVKTAFLHAPINHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDC 394          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.320e-30
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV+ AYL + +EEK++VK P  +  +  +    V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+I    RE VD+FK  I + F MKDL  L  +LG+ ++R+R    + ISQ +Y+  VL ++G   C
Sbjct:  313 MDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADC 472          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.030e-30
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLP---PKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDVD AYL + +EEK+++K P    K+ P   ++  V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+IA   R   D+FK  I + F MKDL  L  +LG+ ++R+R    + ISQ  Y+  +L ++G   C
Sbjct:  602 MDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDC 761          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.710e-29
Identity = 64/161 (39.75%), Postives = 99/161 (61.49%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEKLFVKLPPKFSPFSRDI-PFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRREK-VDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 159
            MDV  A+L A + E +FV+ PP F    +D    V +L+KSLY L QS  NW + I+ FLV IG     +D+C+Y    D  +  + + +Y+DDL++AG   + +   K  + Q F+M D+G +  VLG+E++RDR  GT+TISQ +Y + +L+R+G  +C
Sbjct:  567 MDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHD--DVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSEC 725          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HG25_PARCT1.080e-3239.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA3.550e-3244.17Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA4.320e-3242.94Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA6.510e-3243.48Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT6.690e-3238.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA1.940e-3143.48Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A7D9F138_PARCT1.160e-3038.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TIM1_9STRA2.320e-3042.86Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA8.030e-3042.33Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6H5KL37_9PHAE2.710e-2939.75Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..159
e-value: 4.3E-36
score: 124.8
NoneNo IPR availablePANTHERPTHR11439:SF280coord: 2..152
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11272contigH-paniculata_contig11272:285..761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11272.814.1mRNA_H-paniculata_contig11272.814.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11272 3..761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11272.814.1 ID=prot_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRN
WNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR
EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREV
LKRYGFDQC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like