mRNA_H-paniculata_contig29986.8136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29986.8136.1
Unique NamemRNA_H-paniculata_contig29986.8136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2N5VDA8_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VDA8_9BASI)

HSP 1 Score: 97.1 bits (240), Expect = 3.830e-21
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVS 429
            E++ L + GVW     P N  ++    ++ +K    G++++YK   VA G  QIKG HF +  +P    +  +++L++    +W +   DF  AYL +PID++++V  P      PG   +L KA+Y   QAGRCW  ++S
Sbjct:  103 ELRNLQELGVWEVELVPDNTRILGAQWVFAKKFNSKGEIQRYKARHVAKGYSQIKGKHFDKTFAPTATFISMRLILTIVACFNWPVHSFDFVAAYLNSPIDEEVWVTAPKGLDVLPGHACQLKKALYGTKQAGRCWWQHLS 243          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6LS40_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS40_9ASTR)

HSP 1 Score: 98.6 bits (244), Expect = 3.840e-21
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
            EMQ + DN VW  VE P     V +  I+KRK   +G V  YK  LVA G  Q +G+ + E  SP       +++L++A   D+ +W +D + A+L   + +D+++  P  + +  +P  V +L+K+IY L QA RCW++
Sbjct:  768 EMQSMCDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVYKLNKSIYGLKQASRCWNL 907          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-21
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKY--REFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
            E + L+ N  W  V  PK K +V +  ++K K   +G VE++K  LVA G  Q +GI +QE  SP       + +L++A I DW +  +D + A+LQ  +D+ IF++ P  Y  +E P  V +L+++IY L QA RCW+  + T L
Sbjct:  836 EYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFL 981          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 98.2 bits (243), Expect = 5.200e-21
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
            EMQ + DN VW  VE P     V +  I+KRK   +G V  YK  LVA G  Q +G+ + E  SP       +++L++A   D+ +W +D + A+L   + +D+++  P  + +  +P  V +L+K+IY L QA RCW++
Sbjct:  488 EMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNL 627          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR)

HSP 1 Score: 97.8 bits (242), Expect = 7.260e-21
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
            EMQ + DN VW  VE P     V +  I+KRK   +G V  YK  LVA G  Q +G+ + E  SP       +++L++A   D+ +W +D + A+L   + +D+++  P  + +  +P  V +L+K+IY L QA RCW++
Sbjct:  821 EMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNL 960          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 97.4 bits (241), Expect = 8.930e-21
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
            E+Q L  N  WT VE PKN+  +    +YK K  E+G V+KYK  LVA G RQ+ G+ + E  SP       +M+L +AV     L   D + A+L   ID+ ++++ P  Y++    V +L++++Y L QA RCW+   ++ L
Sbjct:  155 EIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVL 298          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: UPI00053F92D1 (uncharacterized protein LOC104884908 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F92D1)

HSP 1 Score: 95.9 bits (237), Expect = 3.370e-20
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFP-GAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
            E+  L  N  W     P  K  +    +Y+ K   +G +E+YK HLV  GNRQ++G+ + E L+P    V  +  L++A   +W L  +D   A+L   +D++++++ P  ++    G V RL K++Y L QA RCW   ++T L
Sbjct:  893 EIDALEANATWVLTPLPPGKHALGCKWVYRIKYHVDGSIERYKAHLVIFGNRQVEGVDYNETLTPVAKMVTVRAFLAIAAAKNWELHQMDVHNAFLHGDLDEELYMKPPPGFQHTTSGLVCRLQKSLYGLRQAPRCWFAKLATSL 1037          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6L9X5_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L9X5_9ASTR)

HSP 1 Score: 95.1 bits (235), Expect = 6.090e-20
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
            EMQ + DN VW  VE P       +  I+KRK   +G V  YK  LVA G  Q +G+ + E  SP       +++L++A   D+ +W +D + A+L   + +D+++  P  + +  +P  V +L+K+IY L QA RCW++
Sbjct:  624 EMQSMRDNQVWDLVELPPGSRAGGSKWIFKRKTDMHGNVHTYKAQLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNL 763          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 94.7 bits (234), Expect = 8.860e-20
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
            E+Q L  N  WT VE PKN+ V+    +Y  K  E+G V+KYK  LVA G RQ+ G+ + E  SP       +M+L +A      L   D + A+L   ID+ ++++ P  Y++    V +L++++Y L QA RCW+   ++ L
Sbjct:  220 EIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVL 363          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.190e-19
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYR-EFPGAVGRLDKAIYVLVQAGRCW 414
            E+ G++ NG W  VERPK+  +VS   ++K K  + G V+K+K  LVA G  Q  G+ +    +P       +++  LA I    + H+DF QAYL A  D DI++E+P  +  +    VG L K +Y L Q+G  W
Sbjct:  898 ELDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAIFKCEITHLDFPQAYLNAKTDFDIYIELPEGFDVDTKKYVGLLRKGLYGLKQSGMLW 1034          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N5VDA8_9BASI3.830e-2132.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LS40_9ASTR3.840e-2135.00Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6S7HNY1_PARCT3.910e-2136.99Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5N6LW24_9ASTR5.200e-2135.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A5N6MMD4_9ASTR7.260e-2135.00Uncharacterized protein n=6 Tax=Mikania micrantha ... [more]
A0A8J6LFP5_TENMO8.930e-2136.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00053F92D13.370e-2032.41uncharacterized protein LOC104884908 n=1 Tax=Beta ... [more]
A0A5N6L9X5_9ASTR6.090e-2034.29Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A8J6LHG9_TENMO8.860e-2035.42Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A6A4ZHD7_9STRA2.190e-1936.50Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29986contigH-paniculata_contig29986:52..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue3e-08
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size438
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29986.8136.1prot_H-paniculata_contig29986.8136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29986 238..480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.7339444-UTR-H-paniculata_contig29986:51..2371622929915.7339444-UTR-H-paniculata_contig29986:51..237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29986 52..237 -
1691481067.8853788-UTR-H-paniculata_contig29986:51..2371691481067.8853788-UTR-H-paniculata_contig29986:51..237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29986 52..237 -
1622929915.7667801-UTR-H-paniculata_contig29986:480..4891622929915.7667801-UTR-H-paniculata_contig29986:480..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29986 481..489 -
1691481067.9088416-UTR-H-paniculata_contig29986:480..4891691481067.9088416-UTR-H-paniculata_contig29986:480..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29986 481..489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.751657-CDS-H-paniculata_contig29986:237..4801622929915.751657-CDS-H-paniculata_contig29986:237..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29986 238..480 -
1691481067.8973858-CDS-H-paniculata_contig29986:237..4801691481067.8973858-CDS-H-paniculata_contig29986:237..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29986 238..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29986.8136.1

>prot_H-paniculata_contig29986.8136.1 ID=prot_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGN
RQIKGIHFQEALSPAPAAVITKMMLSLAVI*
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mRNA from alignment at H-paniculata_contig29986:52..489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29986.8136.1 ID=mRNA_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig29986:52..489- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCGAGATGCAAGGCCTCATCGACAACGGGGTTTGGACGCAAGTGGA GCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGATTATTTACAAAAGGA AAATCGGCGAGAACGGCAAAGTGGAGAAATACAAGTGCCACCTGGTCGCC CACGGGAACCGTCAGATCAAGGGCATCCACTTCCAGGAAGCTTTGTCCCC TGCACCCGCAGCGGTCATCACAAAAATGATGTTGTCGCTTGCGGTAATCT AGGACTGGTAACTTTGGCACGTCGACTTTGAACAAGCGTACCTGCAGGCG CCTATCGACCAGGATATTTTCGTCGAAATTCCCGTAAAATATCGGGAGTT CCCAGGAGCGGTGGGGCGCCTCGACAAGGCAATCTACGTATTGGTACAAG CCGGCAGATGCTGGAGTATGAACGTTTCCACGGACCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig29986:52..489-

>mRNA_H-paniculata_contig29986.8136.1 ID=mRNA_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig29986:52..489- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTCATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAA
GAACAAGCTGGTCGTGAGCACGATGATTATTTACAAAAGGAAAATCGGCG
AGAACGGCAAAGTGGAGAAATACAAGTGCCACCTGGTCGCCCACGGGAAC
CGTCAGATCAAGGGCATCCACTTCCAGGAAGCTTTGTCCCCTGCACCCGC
AGCGGTCATCACAAAAATGATGTTGTCGCTTGCGGTAATCTAGATGCAAG
GCCTCATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAG
CTGGTCGTGAGCACGATGATTATTTACAAAAGGAAAATCGGCGAGAACGG
CAAAGTGGAGAAATACAAGTGCCACCTGGTCGCCCACGGGAACCGTCAGA
TCAAGGGCATCCACTTCCAGGAAGCTTTGTCCCCTGCACCCGCAGCGGTC
ATCACAAAAATGATGTTGTCGCTTGCGGTAATCTAG
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