mRNA_H-paniculata_contig29959.8129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29959.8129.1
Unique NamemRNA_H-paniculata_contig29959.8129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A6H5K4Q5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.560e-20
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATKKHGEPC--HWFADVLPNL 198
            RWLLVGPKRSGS  H DPLGTSAWNTL SGRKLWF+APP L+     A  K  E C   WF + +P +
Sbjct:  161 RWLLVGPKRSGSNIHNDPLGTSAWNTLLSGRKLWFIAPPHLES----ALLKTRESCTAKWFLEEVPKI 224          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: D7FPH7_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.050e-18
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELK 126
            RWLLVGPKRSGS  H DPLGTSAWNTL SGRKLWF+APP L+
Sbjct:  164 RWLLVGPKRSGSNIHNDPLGTSAWNTLLSGRKLWFIAPPHLE 205          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: D7G461_ECTSI (JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G461_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.620e-17
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPEL-------KDQFRPATKKHGEPCHWFADVLPNL 198
            RW LVGPKRSG+  H DPLGTSAWNT+ SGRKLW L PP +       KD  R    +  EP ++F D+LP +
Sbjct:  202 RWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVIRQG--EDDEPINYFVDLLPRI 272          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A7S3A9P3_9RHOD (Hypothetical protein (Fragment) n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9P3_9RHOD)

HSP 1 Score: 82.0 bits (201), Expect = 6.720e-17
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPAT--KKHGE---PCHWFADVLPNL 198
            RW LVGPKRSGS  H DPLGTSAWN L SGRK W L PP +  +   A   K+ GE   P  +F ++LP L
Sbjct:  186 RWFLVGPKRSGSGVHIDPLGTSAWNALISGRKRWILFPPNVPKKIVKAKNLKRIGEDDEPVDYFTNILPRL 256          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A1R2BUK2_9CILI (JmjC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BUK2_9CILI)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-16
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATK-----KHGEPCHWFADVLPNL 198
            RWLL+GPKRSG+  H DPL TSAWN    G KLW L PP +      + +     +H EP  WF DVLP +
Sbjct:  164 RWLLIGPKRSGTTMHKDPLSTSAWNASIVGYKLWALFPPNISPSIIKSPRLFEGSEHAEPFFWFRDVLPKI 234          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A3R7HIJ7_9STRA (JmjC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HIJ7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.260e-16
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATKKH------GEPCHWFADVLPNL 198
            RW LVGPKRSG+  H DPLGTSAWNTL  GRK W L PP L D+     KKH       E  ++F D+LP L
Sbjct:  172 RWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPPHL-DKRLVNGKKHVRGDEDDEAVNYFMDLLPRL 242          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A7S3TBX9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TBX9_9SPIT)

HSP 1 Score: 80.1 bits (196), Expect = 2.580e-16
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPEL-KDQFRPATKKHGEPCHWFADVLPNL 198
            RW ++GP RSGS+ H DPLGTSAWN L  GRKLW L PP + K+  +P      E   W+ +V P L
Sbjct:  191 RWFVLGPSRSGSYVHIDPLGTSAWNALLQGRKLWALFPPHVPKELLQPKGCGGREAIAWWVNVFPRL 257          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A8J4S6V7_9STRA (JmjC domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4S6V7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.080e-16
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATKKH------GEPCHWFADVLPNL 198
            RW LVGPKRSG+  H DPLGTSAWNTL  GRK W L PP L D+     KKH       E  ++F D+LP L
Sbjct:  601 RWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPPHL-DKRLVNGKKHVRGDEDDEAVNYFMDLLPRL 671          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A3F2RNZ4_9STRA (JmjC domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNZ4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-16
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATKKH------GEPCHWFADVLPNL 198
            RW LVGPKRSG+  H DPLGTSAWNTL  GRK W L PP L D+     KKH       E  ++F D+LP L
Sbjct:  898 RWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPPHL-DKRLVNGKKHVRGDEDDEAVNYFMDLLPRL 968          
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Match: A0A7S3G3Q2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G3Q2_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 3.870e-16
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQF-RPATKK--HGEPCHWFADVLPN 195
            RW LVGPKRSG+  H DPLGTSAWNTL SGRK W + P   K  + +P  K    GE   WF+ ++P 
Sbjct:   34 RWFLVGPKRSGTNVHIDPLGTSAWNTLISGRKRWVVFPFATKKSYIKPGAKVLGDGEAITWFSKLIPQ 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29959.8129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4Q5_9PHAE6.560e-2061.76JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FPH7_ECTSI4.050e-1883.33JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G461_ECTSI1.620e-1753.42JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S3A9P3_9RHOD6.720e-1754.93Hypothetical protein (Fragment) n=3 Tax=Rhodosorus... [more]
A0A1R2BUK2_9CILI1.160e-1649.30JmjC domain-containing protein n=1 Tax=Stentor coe... [more]
A0A3R7HIJ7_9STRA2.260e-1655.56JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S3TBX9_9SPIT2.580e-1650.75Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A8J4S6V7_9STRA3.080e-1655.56JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
A0A3F2RNZ4_9STRA3.100e-1655.56JmjC domain-containing protein n=2 Tax=Phytophthor... [more]
A0A7S3G3Q2_9EUKA3.870e-1652.94Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29959contigH-paniculata_contig29959:2487..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog2880.D7G461
KEGG koko:K11323
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.974594-CDS-H-paniculata_contig29959:2486..26901622929914.974594-CDS-H-paniculata_contig29959:2486..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29959 2487..2690 -
1691481067.5558832-CDS-H-paniculata_contig29959:2486..26901691481067.5558832-CDS-H-paniculata_contig29959:2486..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29959 2487..2690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29959.8129.1prot_H-paniculata_contig29959.8129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29959 2487..2690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29959.8129.1

>prot_H-paniculata_contig29959.8129.1 ID=prot_H-paniculata_contig29959.8129.1|Name=mRNA_H-paniculata_contig29959.8129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
RWLLVGPKRSGSFAHTDPLGTSAWNTLFSGRKLWFLAPPELKDQFRPATK
KHGEPCHWFADVLPNLL*
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mRNA from alignment at H-paniculata_contig29959:2487..2690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29959.8129.1 ID=mRNA_H-paniculata_contig29959.8129.1|Name=mRNA_H-paniculata_contig29959.8129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig29959:2487..2690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGCTCTTGGTTGGCCCGAAGCGCTCAGGCAGTTTCGCCCACACTGA CCCCCTCGGCACATCGGCATGGAACACGCTCTTTAGCGGCCGTAAGTTGT GGTTCCTTGCTCCGCCCGAGTTAAAGGATCAATTCCGACCCGCTACGAAG AAGCACGGCGAGCCCTGCCACTGGTTCGCCGACGTTCTACCGAACCTCCT GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig29959:2487..2690-

>mRNA_H-paniculata_contig29959.8129.1 ID=mRNA_H-paniculata_contig29959.8129.1|Name=mRNA_H-paniculata_contig29959.8129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig29959:2487..2690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGCTCTTGGTTGGCCCGAAGCGCTCAGGCAGTTTCGCCCACACTGA
CCCCCTCGGCACATCGGCATGGAACACGCTCTTTAGCGGCCGTAAGTTGT
GGTTCCTTGCTCCGCCCGAGTTAAAGGATCAATTCCGACCCGCTACGAAG
AAGCACGGCGAGCCCTGCCACTGGTTCGCCGACGTTCTACCGAACCTCCT
GTAAAGGTGGCTCTTGGTTGGCCCGAAGCGCTCAGGCAGTTTCGCCCACA
CTGACCCCCTCGGCACATCGGCATGGAACACGCTCTTTAGCGGCCGTAAG
TTGTGGTTCCTTGCTCCGCCCGAGTTAAAGGATCAATTCCGACCCGCTAC
GAAGAAGCACGGCGAGCCCTGCCACTGGTTCGCCGACGTTCTACCGAACC
TCCTGTAA
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