mRNA_H-paniculata_contig2995.8128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2995.8128.1
Unique NamemRNA_H-paniculata_contig2995.8128.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.420e-46
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDEAEL 510
            MQNEAGSNVDLYIPRKCSWTNRLLQAKDH+STQINVGKLDPVSG FTGESDVYALAGYLR RGEADEALTCLVNKKDE+EL
Sbjct:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 81
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO)

HSP 1 Score: 118 bits (296), Expect = 1.090e-29
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDEAEL 510
            MQNE+G NVDLY+PRKCS+TNRL+QAKDHA+ QINV  +DPV+GI TG+S+VY LAGY+R + E D ALT LV  KD A +
Sbjct:    1 MQNESGQNVDLYVPRKCSYTNRLIQAKDHAAVQINVANVDPVTGIMTGDSNVYCLAGYIRFKSEGDMALTSLVRAKDAAAV 81
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS)

HSP 1 Score: 117 bits (294), Expect = 2.150e-29
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDEAEL 510
            MQNE G NVDLYIPRKCSWTNRL++AKDH S QINV  +DPV+G+FTGES  YA+AGY+R + E D A T LV   D+  L
Sbjct:    1 MQNENGENVDLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKKVL 81
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: A0A024TLB5_9STRA (40S ribosomal protein S21 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLB5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.770e-28
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDE 501
            MQN+AG N+D+YIPRKCSWTNR+L AKDHAS QI V K+D  +G++TG++DVYAL+GY+R++GE D ALT LV K +E
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVD-ANGVYTGQNDVYALSGYIRAKGEGDHALTDLVRKAEE 77
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP)

HSP 1 Score: 113 bits (283), Expect = 7.610e-28
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKD 498
            MQNEAG ++D+YIPRKCSWTNR+L AKDHAS QINVG+++  +G+FTGESD YALAGY+R  GE D+A+T L  + D
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD)

HSP 1 Score: 112 bits (281), Expect = 1.490e-27
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKD 498
            MQNEAG ++D+YIPRKCSWTNR+L AKDHAS QINV +++  +G+FTGESD +ALAGY+RS+GEAD ALT L  + D
Sbjct:    1 MQNEAGESIDIYIPRKCSWTNRILAAKDHASVQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.770e-27
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKD 498
            MQNE G NVDLY+PRKCSWTNRLL + DH S QINVG +DPV+G+FTGES  +A++GY+R++ EAD ALT L    D
Sbjct:    1 MQNENGDNVDLYVPRKCSWTNRLLTSGDHGSVQINVGNVDPVTGLFTGESTPFAISGYVRAKSEADMALTALAKAND 77
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: A0A835Z072_9STRA (40S ribosomal protein S21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z072_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.410e-27
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKD-EAEL 510
            MQNE+G +VDLY+PRKCSWTNRLL AKDHAS QINV K+DP +G+ TG  +V+ALAG+LR  G++D AL  L ++KD EA++
Sbjct:    1 MQNESGKDVDLYVPRKCSWTNRLLVAKDHASVQINVAKIDPQTGVATGAHEVFALAGFLRRLGQSDNALAALSSQKDAEAQI 82
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: A0A448Z9N0_9STRA (40S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9N0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDEA 504
            MQNEAG NVDLY+PRKC+WTNRL++AKDH+S Q+NV  +DPV+G+ TG++  Y L GY+R   E D ALT LV K D A
Sbjct:    1 MQNEAGENVDLYVPRKCNWTNRLVEAKDHSSVQVNVANVDPVTGLATGDATPYCLVGYIRKISEGDMALTALVEKNDAA 79
[Close]
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Match: B7GC20_PHATC (40S ribosomal protein S21 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC20_PHATC)

HSP 1 Score: 110 bits (274), Expect = 1.860e-26
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:  268 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLVNKKDEAEL 510
            MQNE+G NVDLY+PRKCS+TNRL+ +KDH S QINV  +DPV+G+ TG++  YAL G+LR + E D ALT LV KKD AEL
Sbjct:    1 MQNESGDNVDLYVPRKCSYTNRLIASKDHGSVQINVANVDPVTGVATGDATPYALVGFLRFKSEGDMALTSLVQKKD-AEL 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2995.8128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW88_ECTSI2.420e-4695.0640S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID... [more]
A0A1Z5KP36_FISSO1.090e-2966.6740S ribosomal protein S21 n=1 Tax=Fistulifera sola... [more]
B8BZU9_THAPS2.150e-2965.4340S ribosomal protein S21 n=1 Tax=Thalassiosira ps... [more]
A0A024TLB5_9STRA2.770e-2865.3840S ribosomal protein S21 n=3 Tax=Aphanomyces TaxI... [more]
G4ZUD9_PHYSP7.610e-2866.2340S ribosomal protein S21 n=7 Tax=Peronosporaceae ... [more]
K3WSU9_GLOUD1.490e-2767.5340S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID... [more]
A0A7S0FIC7_9STRA1.770e-2764.9440S ribosomal protein S21 n=1 Tax=Minutocellus pol... [more]
A0A835Z072_9STRA2.410e-2763.4140S ribosomal protein S21 n=1 Tax=Tribonema minus ... [more]
A0A448Z9N0_9STRA3.470e-2762.0340S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia... [more]
B7GC20_PHATC1.860e-2664.2040S ribosomal protein S21 n=2 Tax=Phaeodactylum tr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2995contigH-paniculata_contig2995:13232..17862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.4e-37
Seed eggNOG ortholog2880.D7FW88
Preferred nameRPS21
KEGG rclassRC01978
KEGG koko:K02971,ko:K03093,ko:K03644,ko:K03955,ko:K08854,ko:K10900,ko:K13179,ko:K20168
KEGG TC3.D.1.6
KEGG ReactionR07767,R07768
KEGG Pathwayko00190,ko00785,ko01100,ko03010,ko04137,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05202,map00190,map00785,map01100,map03010,map04137,map04714,map04723,map04932,map05010,map05012,map05016,map05202
KEGG ModuleM00146,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009657,GO:0009658,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030867,GO:0031090,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042127,GO:0042175,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3486@1,KOG3486@2759
Ec32 ortholog descriptionRibosomal protein S21e
Ec32 orthologEc-01_003800.1
EC2.7.11.1,2.8.1.8,3.6.4.12,3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03011,ko03021,ko03032,ko03041,ko03400,ko04131
Exons4
Model size1065
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2995.8128.1prot_H-paniculata_contig2995.8128.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2995 13418..17310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.8734558-UTR-H-paniculata_contig2995:13231..134171622929914.8734558-UTR-H-paniculata_contig2995:13231..13417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2995 13232..13417 +
1691481067.4784477-UTR-H-paniculata_contig2995:13231..134171691481067.4784477-UTR-H-paniculata_contig2995:13231..13417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2995 13232..13417 +
1622929914.9409924-UTR-H-paniculata_contig2995:17310..178621622929914.9409924-UTR-H-paniculata_contig2995:17310..17862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2995 17311..17862 +
1691481067.5442178-UTR-H-paniculata_contig2995:17310..178621691481067.5442178-UTR-H-paniculata_contig2995:17310..17862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2995 17311..17862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.888373-CDS-H-paniculata_contig2995:13417..135481622929914.888373-CDS-H-paniculata_contig2995:13417..13548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 13418..13548 +
1691481067.489564-CDS-H-paniculata_contig2995:13417..135481691481067.489564-CDS-H-paniculata_contig2995:13417..13548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 13418..13548 +
1622929914.900475-CDS-H-paniculata_contig2995:15517..155661622929914.900475-CDS-H-paniculata_contig2995:15517..15566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 15518..15566 +
1691481067.5030448-CDS-H-paniculata_contig2995:15517..155661691481067.5030448-CDS-H-paniculata_contig2995:15517..15566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 15518..15566 +
1622929914.9121566-CDS-H-paniculata_contig2995:16277..163641622929914.9121566-CDS-H-paniculata_contig2995:16277..16364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 16278..16364 +
1691481067.5138888-CDS-H-paniculata_contig2995:16277..163641691481067.5138888-CDS-H-paniculata_contig2995:16277..16364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 16278..16364 +
1622929914.9266937-CDS-H-paniculata_contig2995:17250..173101622929914.9266937-CDS-H-paniculata_contig2995:17250..17310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 17251..17310 +
1691481067.5314312-CDS-H-paniculata_contig2995:17250..173101691481067.5314312-CDS-H-paniculata_contig2995:17250..17310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2995 17251..17310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2995.8128.1

>prot_H-paniculata_contig2995.8128.1 ID=prot_H-paniculata_contig2995.8128.1|Name=mRNA_H-paniculata_contig2995.8128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MVSVVPSLPPSHPPFPVLWSLPEYLVNMQNEAGSNVDLYIPRKCSWTNRL
LQAKDHASTQINVGKLDPVSGIFTGESDVYALAGYLRSRGEADEALTCLV
NKKDEAEL*
back to top

mRNA from alignment at H-paniculata_contig2995:13232..17862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2995.8128.1 ID=mRNA_H-paniculata_contig2995.8128.1|Name=mRNA_H-paniculata_contig2995.8128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4631bp|location=Sequence derived from alignment at H-paniculata_contig2995:13232..17862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACTGAGTAGCCTGAGGTGAAAAATATGATGCAGGTACAGGTATTTCC
ATGATTTTTTTAACATGATCAGCTAGCTATGGAGTAATATGGTGGCATAT
AAAGGACAAAGGACCGGGTTTACTCTGGAACCAGGTGAATACGGGTATGA
GAAAGTGAAATTAAACCTTTCGTGGAACTAGGATCGATGGTCTCAGTGGT
CCCGTCACTTCCCCCTTCCCACCCCCCTTTTCCTGTACTCTGGAGCCTGC
CAGAATACCTTGTCAACATGCAAAATGAGGCGGGATCGAACGTTGACCTG
TACATCCCCAGGAAGTGGTGAGTGGAAAGCTCGACGGACTGAATTGAGAA
CCAGAGCTGGCTCGAGATGCACAACATGTGGGACATTATGTGTGCATTGC
CTGCTTGTTCATCACATCCAGAGCAGAAATGAGAGCTATGAATGAGGGTA
GCATTGTGGTAGGCATTATCTTCGACTGTGTCTATCGAGCTATTGTGGTT
TGTTTTTCAATGGTGCCGAACCCGTAAGCAGGATGGACGAAAGCACACAA
CCTTCATAACTGTTTGTCCATCATAAATTACTGTCCATTAGCTGTCATAC
ATCTTGAACAACTATATAACCCTCTGTGTGTAATTTTTACACACCGTGTG
ACGCTGAAATTTTTTACCCTTGCTTCCTAATTTAAGGTAGCATCGAAAGT
TGTGACAGAAAGAGTGGTGCTGAGTTGTTCGTGGTCGGTTCGTCTTGACA
ACCGAGTCTATTTGGGTGCAAACCAAGAACACGGTAAATAAGAAGACGCG
TACCTCCTCATTTTCCATGTTTGGTGCATGCAAAGCCTCTCGTTATGGAC
GTGGGTCGATACAAATGTACAAAATGCTAGGGCAGACATGTCTAAATTTA
CTGCAATCAACAACAGACAGTACAGTCAGATGATACTTACACTCAGCAAC
AGGAGGGAATTAGTTTGGATGTTGAAGAAGTATTAGCCGGTGCGGTTGCT
GTTATCTTCCCGTACACTTGATATTGTGACTGAAACAGTTTGCCTCACTC
GATGTGTTCACGTCAACGGTGATGTCGACGTCCCCTAACCCAAGAGAAGC
ACAAGGCGTCATGTCTGTACTCGTTGATGTCGATTCTGGAGATTCTGATA
TTGATCAAACCCCTCGTCTTACAGATAGCACAGGCTGGACTTCACAGCCC
ACCCTTGTGTGTCTTACCCCATAGCCCGCCCATGTGTTACCGTATAAACA
GCAATACGCTGGACGGGTCGTGTAGGCTTGACAAATTTCCCAGAGTAAAA
GGTAGTGCCGTTGACCCCGTACCATGATCAGTCTATACCCAGAGGTCTCG
TGTCCTCTGAACAACGGTGTGAGTTCGTATATATTAACGAAGGACAACCT
AGCTTGAGCGCGCCACTGCCGATTCCAGATCTTGGGTGGCATGACGGTAT
CGATTGTTTTCTCGAGCGAGAAAGTTTTTATGATTTCATGTACTGATCAA
AGGGATTCGACTACCGGGAATCTTCCCGAGAACGTGGCGGGGGAAGCCAG
AATCATTCGTAAAAAAGGAGAACCCTGCATTTCATGATTGTGTCGGCGCT
CTTACCCCCAAGTATATGATATTAATTCCCTGCTACTCACAGTGCATATT
GCAATATGTTGTATCTCCAAGACACTCGTTTTTCTTTTGTGCTTCAGCCA
CCAACTGCCTGCGAGCATCAACAGTGTGTCACACAAGTAGGGTTCGTAAT
GAGCAGCACAAAATGACGTATTACTCGATACATGCACAATATTGGTGGAG
TAGCTGAGCTCATTTCACTTGCTTTGTGCCGGAAATTCCATGGTCAGAGT
GACGAGAATATTTTGGCAAAAAATTAATCGTGCTGAAACGAGAAATTCAT
GTGAACGCATTGAAATTCCCCGGGGCTGTTTTCCACGGAGGTCCGTGACG
AGGAACCTTCTTGGTGGTTGACACTGTGCTGTGATCAGGAGCAAAGACTC
TGAAACAAATGTGTTGGGTCTTTGAAACCACTAAGTCGGGTTCATTACGT
CGCTGTTGCCTGTTGGGTTCGCTGTGACATGACATTCGAAGTCGATATTC
GAGCGTTCTCTCCAGTTCATCATACTCGTATCACATCACTTTTCCACGTC
TCAAATGTATCTGAACAATTGTGTTGACCTGATCCTGGGAGTACTAGACT
TGATTATCAAGTCGTTTCATTGCCCCTGTTGACGCTACCCTCGTTGCATG
TCTGGCTGACTGTCTTTCACTCTGGCATATTGGTAGCTCATGGACCAACC
GGTTGCTGCAGGCGAAGGACCATGCGTCCACTCAGGTCAGTCTGTATTCA
TTGCACCTCCTTGGTCCGGGTATTTTTGTGTGCGTTTCCCTTTCTTCCCC
GTAGATGAGCGCACCAACCTCATATTGCGAAAGGTCTGAACTTTGCTAAG
AGTTCTGGCCAAGAATTGTTTCGTCGCTCTCACCGCCAGTTGGAAAACGG
TCATCGGTAGCCATCTGTGCGAAAACATTTTCTTCGCAGCTCAAGCTTCA
TCTAGTCAAGCCATCTTGAAAGTGGAGACGAACAAATCGCATAAAACAAA
AGGGAAAACGTGTGTGCAGTCGGCGCTGTATACCGACGAATCGCTTCAAG
TGGTGGCCCTGATAAGTGTGAGTTGGATGGGGGTATACTTCGCGTCCATT
CGAATAGGTCTAATAATGGACAGCTCTTCCATTCGCCATCGATGTGACGC
GATGCCCTAGGTCCGCGAACCCAGAAGGATGTCTGAGTTCTGTGAGGTGA
ACTTAAGATGTACTTACACCCATTCTTGTGTAGTATACCTGGTGCTCTTG
CCGAGTTGTGTAGACGGTCAATGATGCATGTCGTTTAGCGTTCCGTCTGG
CTTCTTTCCGCGGTCGTCTGAATTTGTGTCAAATGCGCGTCATTCACACC
CAGTCCGGTTCGTGAGTTGAACTCTTAGTATGCGCTTGTGTCCCCTGGCA
CGTCTGGTGGATTGTGTATTGTTTGAATCTTCCGCCGGTCCTGCAGATAA
ACGTGGGAAAGCTCGACCCTGTTTCCGGAATCTTCACGGGAGAGTCAGAT
GTGTACGCATTGGCGGGGTACTTGCGCAGCAGGGTGAGGCAAATACAAAA
TTACCTCGTAAGGTGGCAAGAAATCAAGTAAGGCTTCCAGATCCAACAGA
CGTATCGTTCATCGTGCCCGTGTAGCTATATATATATATATATGAGGAAG
GAGCCTAAAACTAGTAGAACAATGGACCCGTTGTTCTGTTGATTTCCTCT
TGGATGGTGCTGCATGTAGGAATGTGAAGGTGTAGTTGGAGTAAGCGAGG
CATTGGCAAGTGTCGTGGTCAAAAGTTTCCATTTTGGAAACTTATTTGTG
GAGGGCCCGCAAACCGTGTACCTTGTGTATGCGGAGATGCATTATTGAAG
AAGTCCAGGCCTTCGGGTAGGGCATGGCTAGAGGGTAACCTTTGCCGATG
ACCAGACAGTAGTCGAGATTGAGGGTCTCAACGTGTTAGGATTCTGTACT
CTGCAGGTGCAGTCTGAAACCGTATGCTGAAACGGCCAAGTCACGTACAA
CCAAGAGACCGAAGGCGGTCCTGGACGGCTATCCCATAATATACCCAAGG
TTTGAGCTAAACGGAAGGGTTGACCGACAAGACTACACTCCATGCGTTTA
GAATGGGTCTGGAATCAGAACACGGTAAAAAGTGTTCTGGGCTCAAGCCT
CTTCCCTCTCGATGCTGCTGATACATGAAAAAAATGTTGGAGGTAGAAAG
GAAGTGTACTTGAAGTCATCGATGAGCTCTGTTGCATGACCAAAAATGTA
TCTTTCCACACACGCTGCCTGCCCTGCCCTCTATGTTGAGGTCTTTATCC
TGCTCGTGTAATCTAGCCTGCATGTTTAATTGGCTCTACCTTCATCACTT
GTTGACCCAGTTTTCATCCGCCCCTCGACGTACGTCTGAACCTCGCTGTC
ATTGATTTCCTCTCGACAGGGGGAAGCGGATGAGGCCCTTACGTGCCTTG
TCAACAAAAAAGATGAGGCGGAGCTCTAGGACGTGGGGTGATCTATCTCA
TGGGGGTAGTGTGTTGGTGCTATCTGGAATAGTGATGTGAAGCTGCTGAA
GGCTTTTGGCAAAGCATGAATGGGGTGGAGTACTAGCTATTGGCCGAATG
CCGTCGCGTCGGGCTCATTATTTCCTTTGAGGGGTATACCTTTTCTTGAG
GGAGCACAATACACGGAAGCTGCTCAACAGACACTACGCATGTTTTGAAC
GGTCAATTGCCTCCAAGTTCCCGTACCTTCCGGTCATTTTTGCGGCTTAT
CCACGTCTGTAAACGCTTCTTGACATGAAACGTTTTTTGGCTTTTGTGTT
GAACCATGCTGCACAACCTCAAAACCAACACAGACTCCACCCCTGGCACA
AGTCCTTGCCAAATCGAATGGCCGAATCGTGCGAACAGTCACGCAACGTG
GCCATGCAAACAGGTTCAGCTTGACAAGCAGCAGAACGTTGGGCAGAATG
TCACCGCAAAATAAATATAACGGAAACATGAACAGTTTCTCCCTTTCTTC
GTCTTCACTGTTTGGTGAAGGTATTTCGACA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2995:13232..17862+

>mRNA_H-paniculata_contig2995.8128.1 ID=mRNA_H-paniculata_contig2995.8128.1|Name=mRNA_H-paniculata_contig2995.8128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig2995:13232..17862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCAGTGGTCCCGTCACTTCCCCCTTCCCACCCCCCTTTTCCTGT
ACTCTGGAGCCTGCCAGAATACCTTGTCAACATGCAAAATGAGGCGGGAT
CGAACGTTGACCTGTACATCCCCAGGAAGTGATGGTCTCAGTGGTCCCGT
CACTTCCCCCTTCCCACCCCCCTTTTCCTGTACTCTGGAGCCTGCCAGAA
TACCTTGTCAACATGCAAAATGAGGCGGGATCGAACGTTGACCTGTACAT
CCCCAGGAAGTGCTCATGGACCAACCGGTTGCTGCAGGCGAAGGACCATG
CGTCCACTCAGCTCATGGACCAACCGGTTGCTGCAGGCGAAGGACCATGC
GTCCACTCAGATAAACGTGGGAAAGCTCGACCCTGTTTCCGGAATCTTCA
CGGGAGAGTCAGATGTGTACGCATTGGCGGGGTACTTGCGCAGCAGGATA
AACGTGGGAAAGCTCGACCCTGTTTCCGGAATCTTCACGGGAGAGTCAGA
TGTGTACGCATTGGCGGGGTACTTGCGCAGCAGGGGGGAAGCGGATGAGG
CCCTTACGTGCCTTGTCAACAAAAAAGATGAGGCGGAGCTCTAGGGGGAA
GCGGATGAGGCCCTTACGTGCCTTGTCAACAAAAAAGATGAGGCGGAGCT
CTAG
back to top