mRNA_H-paniculata_contig299.8119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig299.8119.1 vs. uniprot
Match: D7FYC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC3_ECTSI) HSP 1 Score: 534 bits (1376), Expect = 7.630e-169 Identity = 389/1024 (37.99%), Postives = 523/1024 (51.07%), Query Frame = 2
Query: 134 FVCLRQRAR-STLVGHNNSSTAIVDRLRDCPKYVSIPALSSVFASAGLLWSEEEADYIIRRFADNRRRIDWRRLIRALDVTPPEDFTDPDRSFIDQLPQPYRLVVNVLETDILDRAWAQIVTEHPDLNTNSADKARVPVEIDLKRSCPPGLWLYHPTVDSAAPTQTHEP--GANSEGHRKKSD--LSGVPIAQARFMLGSAAGNANSNSSEAMLPEIIRRGEGFLTALQWDQSGEFLFTGSCDGSVCLRRADAFEHVVDRVDVFSAESC-----------AAVTCLSRPVRSLGGRPAYPTCVRVAAAATESVP-----SPKETIHRSNEDLCTNGGGTGDMVAEIPVTATPLLP---PRSRACILDMVLCERGRRPGTG--------RSDGDVRATET------IPTLRAICYVDL-PRGENVTELS--LSCDGKRLVIASSIGSVALWALPPFSSSPCMNTSRN---YTAEDDLVASDGAAEDIIDNSVGKSDTNRNKRGVHPSLKAAAVATAAV--------------------------------QLGRPEIFIPHLPSPEQRKYNKILADYQRRVDAGEIEKAAENDATEVHLGADSLNLKPKPPSAPLVAYHLACVSLLSNIGMKGKGKPGYGGAEGAGLAIWRSRSNVWRLYRLPEILPGAQIGP--CMSESTNELEVETVKDTGVSGECDGHDPRDDD-LFSTVPITPIVDVACIPSAEWVLPSPVTFSVPCDAGGGVEGGRHNDAGRQ----------ADSPAYPPLVALGTENGGVYVCDGVLGTARKGLSMHRAKVTALTFHRRRFLISGSEDEMIHIHDITLSPATYFGGGGGDIAGRGHWSCTSLRCLHDARGSGIVRVNCLNQTPLMFAEDTSGRIVAYDIIMGTVLGVLCLEGKHQNVVSSSHNPLSAGGGVGLNG-----KQDLTWGAGGDSLAVVSSCSAIEDCEQTTTQKATINRDSRG-MLGIWSAADVIWGLCPRVRELTNHERPALVADIVKLFHELEPAERK 2920
F LRQR R ++ VG ++ RL D PKYVS+ AL S F AG++ +E+E Y++++FADNRRRIDW+RL+ ALDV PP DFTDPDRSF+D LPQPYRL+V+VLET+I+DRAW +V HP+L+T+ AD+AR +IDLKRSC P + L P A +P A EG +D L G ++ F G+A+ + G ++ +QWD G+FLFTG DGSVC+R A A + + V + S+ C AAVT LSRPV SLGGR + VR+AA T S P +P +T +R T + P +A +L PRSRA E G P G RS+ A + P R IC V+L EN T +S LS DG+RL + ++ G V+ W+LPP S+ + +R+ EDD V G+ G + A V + QLG+PE IPH+PSPE+ + K L +Y++RV+AGEI++ +T+ KPP +A+HLA V + G+ GG GLA+WRS SNV RL+RLP + G + N+ VE + TG G + D + S + D++ +PS EWVLPSP+T C+ GG D GR+ AD+PA PLVA+GTENGGVY+ D LGT R GLS HRA+VTAL FH +RFL+SGS+DEMI IH +T++ T G GGD G LRCLHDARGSGIVR+ C + PL AEDTSGR+V YD++ GT+LGVL L+ V++ P G G ++ K + W GG+ +AVV EQ T+ + DS G LG+WSA+D++W L P +R + ERP D+ +LF+ L P RK
Sbjct: 5 FAHLRQRFRLASFVGWHS-------RLADGPKYVSLSALKSAFGVAGVVLTEDEVGYLVKKFADNRRRIDWKRLMIALDVGPPADFTDPDRSFLDNLPQPYRLIVSVLETEIVDRAWELVVERHPELDTSPADEARAAADIDLKRSCHPFVRLLDPHSPLPAHAGDVKPVAAAAKEGEAIAADGFLDGRGSSELLFEGKDRNGDADDDGGGG------ENDAGNVSTMQWDNRGQFLFTGGRDGSVCVRLAGAVKDI--GVQIRSSSLCGETFSEGNAKSAAVTFLSRPVGSLGGRS---SSVRIAAVVTSSCPDSGHGNPDQTGNREAGQQETERDAGAEPRPACPSSAVSVLEMTVPRSRAGD------EAGGSPARGSLEHHQGARSEHGADAANSGNRRNYAPAFRVICTVELHSEQENATAVSCTLSPDGRRLAVTTASGRVSTWSLPPVSAPLERHRNRSPQQSAREDDDVDGVQPGSSRTSAGHGRETPKEGMAGQQGGERGAGVGESGAVLAGRDDDXXXXXXXXXXXXXXXXXXXXXXXTQLGQPEFTIPHVPSPEELSHAKALQEYRKRVEAGEIQEPT---STQEXXXXXXXXXXXKPPQLSGLAHHLARVDFIP----AADGRLNGGGGSTGGLAVWRSNSNVCRLFRLPPPVYDGDGGQRQTVEGGNNDGGVELSR-TGTVAASSGFESADKTGIGSEGSLAAKYDISRLPSVEWVLPSPITVLAVCEE---ETGGEAQDDGREKGGGWSCCGGADAPA--PLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVADPT---GAGGDRRCVG--GTPRLRCLHDARGSGIVRLACFREMPLAVAEDTSGRVVVYDLLSGTMLGVLALKDDAITSVAADR-PDRNGDGAAVSHETVAPKAGIIWSEGGECMAVVM------PQEQETSVLSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSPRDVAELFYGLLPRYRK 979
BLAST of mRNA_H-paniculata_contig299.8119.1 vs. uniprot
Match: A0A2R5GNW0_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNW0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8 Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 2
Query: 128 DVFVCLRQRARSTLVGHNNSSTAIVDRLRDCPKYVSIPA--LSSVFASAGLLWSEEEADYIIRRFADNRRRIDWRRLIRALDVTPPEDFTDPDRSFIDQLPQPYRLVVNVLETDILDRAWAQI----------VTEHPDLNTNSADKA 535
D++ L +AR + H S K +PA V A GL E++A+ + +FAD R +D+ + R LDV PPED DP + D+LPQPYR++V +LE +++ AW QI VT+ L+ NSA +A
Sbjct: 59 DLWRSLESQARKSSAAHAGS------------KSHKLPAEDFLHVLAQHGLRLQEQDANLV--KFADFRGFVDFVKFYRMLDVLPPEDHVDPSLTR-DRLPQPYRMLVKILEDHVIEAAWEQITLRNMPKSARVTQSQSLSGNSASRA 191
BLAST of mRNA_H-paniculata_contig299.8119.1 vs. uniprot
Match: A0A7S2RZG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZG0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.410e-7 Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 2
Query: 263 SAGLLWSEEEADYIIRRFADNRRRIDWRRLIRALDVTPPEDFTDPDRSFIDQLPQPYRLVVNVLETDILDRAWAQIVTEHPDLNTNSAD 529
S+G+ E + I FAD + +D+R+ R+L + P D++DP F D LPQPYR+++ V+E +IL+ AW ++ HP+L D
Sbjct: 90 SSGIRLQEADCTAITMVFADWQGDVDYRKWWRSLQIAKPSDYSDPALHF-DTLPQPYRMILKVMEQEILEPAWEELCVRHPELRLVKPD 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig299.8119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig299.8119.1 >prot_H-paniculata_contig299.8119.1 ID=prot_H-paniculata_contig299.8119.1|Name=mRNA_H-paniculata_contig299.8119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=962bp MPPTEDVFVCLRQRARSTLVGHNNSSTAIVDRLRDCPKYVSIPALSSVFAback to top mRNA from alignment at H-paniculata_contig299:13427..18927+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig299.8119.1 ID=mRNA_H-paniculata_contig299.8119.1|Name=mRNA_H-paniculata_contig299.8119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5501bp|location=Sequence derived from alignment at H-paniculata_contig299:13427..18927+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig299:13427..18927+ >mRNA_H-paniculata_contig299.8119.1 ID=mRNA_H-paniculata_contig299.8119.1|Name=mRNA_H-paniculata_contig299.8119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5772bp|location=Sequence derived from alignment at H-paniculata_contig299:13427..18927+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |