prot_H-paniculata_contig29887.8115.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig29887.8115.1
Unique Nameprot_H-paniculata_contig29887.8115.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length390
Homology
[Close]
BLAST of mRNA_H-paniculata_contig29887.8115.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.460e-13
Identity = 68/209 (32.54%), Postives = 100/209 (47.85%), Query Frame = 0 
Query:  151 LLRETARTLAVLTVRIPTHVVLLPPRQNESENLREEEREEQNWTKRWKTW----------HDEGKKAG---------KGRITKEFRLFFLCGHDNSLAECGLEGKGYRIETPRTWVKKSVPFAKALLVVLNITLKSVAGLSIPV---EEIAGADEQWWGKVVSSMEDAAETLIDEVCSAGVERLDEVRATG--ENLEQSTV-ADGRQSV 334
            +L   AR +A+L   IP  V +LP R      L E +R  + W+   K W           +  +K           +G +T+E RLFFLCG D SLAECG +G+GY ++    WV+K+ P AK  L + +I LK   GL++     E   G  E     + + +EDA    I+   S    RLD ++ +G  E L  + V  DG Q++
Sbjct:  875 ILVGVAREVAILRWPIPRFVCVLPARDT---RLSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSED----MSAFVEDALSAGIEGTTSKAGNRLDRLQNSGPSERLPHAGVRGDGMQTL 1076
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29887.8115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH6_ECTSI2.460e-1332.54LRR-GTPase of the ROCO family, incomplete sequence... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..144
NoneNo IPR availableCOILSCoilCoilcoord: 176..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29887contigH-paniculata_contig29887:126..2094 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29887.8115.1mRNA_H-paniculata_contig29887.8115.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig29887 126..2095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig29887.8115.1 ID=prot_H-paniculata_contig29887.8115.1|Name=mRNA_H-paniculata_contig29887.8115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=390bp
VHSDGDNEVFEEIREELRKVQSSMSIMQEVKNFAEESQKTTSEMAAVHSD
ADNEVLEEIREGLRKLQSSMSIMQEVKNIVEETRKTTSEMAAVHSDAKSE
ELRKMLSSMPTMDEVKNIVEESQKTATSEMAARMEEQMKELRRVEPHLSA
LLRETARTLAVLTVRIPTHVVLLPPRQNESENLREEEREEQNWTKRWKTW
HDEGKKAGKGRITKEFRLFFLCGHDNSLAECGLEGKGYRIETPRTWVKKS
VPFAKALLVVLNITLKSVAGLSIPVEEIAGADEQWWGKVVSSMEDAAETL
IDEVCSAGVERLDEVRATGENLEQSTVADGRQSVASSNVSGTMCDECCMQ
QLHMQLNKCFPRYKSGNLMHSAITLAACKTHFHHHTVESE
back to top