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Homology
BLAST of mRNA_H-paniculata_contig29887.8115.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.460e-13 Identity = 68/209 (32.54%), Postives = 100/209 (47.85%), Query Frame = 1
Query: 451 LLRETARTLAVLTVRIPTHVVLLPPRQNESENLREEEREEQNWTKRWKTW----------HDEGKKAG---------KGRITKEFRLFFLCGHDNSLAECGLEGKGYRIETPRTWVKKSVPFAKALLVVLNITLKSVAGLSIPV---EEIAGADEQWWGKVVSSMEDAAETLIDEVCSAGVERLDEVRATG--ENLEQSTV-ADGRQSV 1002
+L AR +A+L IP V +LP R L E +R + W+ K W + +K +G +T+E RLFFLCG D SLAECG +G+GY ++ WV+K+ P AK L + +I LK GL++ E G E + + +EDA I+ S RLD ++ +G E L + V DG Q++
Sbjct: 875 ILVGVAREVAILRWPIPRFVCVLPARDT---RLSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSED----MSAFVEDALSAGIEGTTSKAGNRLDRLQNSGPSERLPHAGVRGDGMQTL 1076
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 100.9 |
| Seed ortholog evalue | 1.4e-18 |
| Seed eggNOG ortholog | 2880.D7FU35 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | regulation of response to stimulus |
| EggNOG OGs | COG4886@1,KOG0619@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 1172 |
| Cds size | 1170 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29887.8115.1 >prot_H-paniculata_contig29887.8115.1 ID=prot_H-paniculata_contig29887.8115.1|Name=mRNA_H-paniculata_contig29887.8115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=390bp
VHSDGDNEVFEEIREELRKVQSSMSIMQEVKNFAEESQKTTSEMAAVHSD
ADNEVLEEIREGLRKLQSSMSIMQEVKNIVEETRKTTSEMAAVHSDAKSE
ELRKMLSSMPTMDEVKNIVEESQKTATSEMAARMEEQMKELRRVEPHLSA
LLRETARTLAVLTVRIPTHVVLLPPRQNESENLREEEREEQNWTKRWKTW
HDEGKKAGKGRITKEFRLFFLCGHDNSLAECGLEGKGYRIETPRTWVKKS
VPFAKALLVVLNITLKSVAGLSIPVEEIAGADEQWWGKVVSSMEDAAETL
IDEVCSAGVERLDEVRATGENLEQSTVADGRQSVASSNVSGTMCDECCMQ
QLHMQLNKCFPRYKSGNLMHSAITLAACKTHFHHHTVESE back to topmRNA from alignment at H-paniculata_contig29887:126..2095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig29887.8115.1 ID=mRNA_H-paniculata_contig29887.8115.1|Name=mRNA_H-paniculata_contig29887.8115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1970bp|location=Sequence derived from alignment at H-paniculata_contig29887:126..2095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACACAGTGATGGAGATAATGAGGTGTTCGAGGAGATTCGGGAGGAGCT
GAGAAAAGTCCAATCTTCCATGTCCATCATGCAAGAAGTCAAGAACTTTG
CAGAGGAGTCGCAAAAGACTACGTCAGAGATGGCGGCGGTAAGGTAGTTT
CGTACGCAGGTTCTTTTTTTGTGTATTCGATGTGCTTCTTCGAGTGCGGC
TGCGAAAGCGCGGCGAAACCATTTACTGTGGTTATTATTAGTACCCCGCT
AGTGATGAACAAAGGTATGTATGTCTCCTTGGTGGCGAAGAGACTGTCGA
ACTCTGCTTTACTAGCCTTTCAAACGAGCGTGGCACGTATACCTAATGAA
GGGGCTACCTAATGAAGGCGGGACTAAACTTCCATGCTCACTGCCACAAT
GTCGAACATTTCACCAGATTAAACACGCTTGGTGTGCCCGCTCAGCACGG
TTCAGGTAACTCTTGAAAAGACAAGTCTGTGGTTTCGTTGCTTGACTGGG
TCATTCGCTCATGACAGGTCCACAGTGATGCAGATAATGAGGTGTTGGAG
GAGATTCGGGAGGGGCTGAGAAAACTCCAATCTTCCATGTCCATCATGCA
AGAAGTCAAGAACATTGTAGAGGAGACGCGAAAGACTACGTCGGAGATGG
CGGCGGTAAGGGAGTTTCGTACCCAGGTTCTTTGTTTGCGTATTCGATGT
GCTTCTTCGAGTGCGGCTGCGAAAACACGGCGAAACCATTTGCTGTGGTT
ATTAGTACCCCGCCAGTGATGAACAAAGGTATGCATGTCTCCTTGGTGGC
GAAGAGACTGTCGAACTCTGCTTTACTAGCCTTTCAAACGAGCGTGGCAC
GTATACCTAATGAAGGGGCTACGTAATGAAGGCGGGACTAAGCTTCCATG
CTCACTGCCACAATGTCGAACATTTCACCAGATTAAACACGCTTGGTGTG
CCCGCTCAGCACGGTTCAGGTAACTCTTGAAAAGACAAGTCTCTGGTTTC
GTTGCTTGACTGGGTCATTCGCCCCTCAAATAATCTTGTCTGACGTCAGC
ACTCTCTCGCTCCTGATTATGACAGGTCCACAGTGATGCAAAGAGTGAGG
AGCTGAGAAAAATGCTATCTTCTATGCCCACCATGGACGAAGTCAAGAAC
ATTGTAGAGGAGTCGCAAAAGACTGCTACGTCGGAGATGGCGGCAAGGAT
GGAAGAGCAGATGAAGGAGTTGAGACGTGTGGAACCGCATCTGTCTGCCC
TCCTGCGAGAGACGGCGAGGACACTAGCCGTCCTGACGGTTCGCATTCCA
ACCCATGTGGTGCTCTTGCCTCCGCGGCAAAACGAGTCTGAAAACCTGAG
AGAGGAGGAAAGAGAGGAACAAAACTGGACAAAGAGGTGGAAGACGTGGC
ATGATGAGGGCAAGAAGGCCGGGAAAGGCAGGATAACGAAGGAGTTTAGA
CTGTTCTTTCTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGCTTGA
AGGAAAGGGGTACCGGATAGAGACTCCGCGAACGTGGGTGAAAAAGAGTG
TCCCGTTCGCCAAGGCCCTACTGGTCGTCCTAAATATCACGCTGAAGAGC
GTCGCAGGGTTGAGCATTCCCGTTGAAGAGATCGCAGGTGCAGATGAACA
ATGGTGGGGTAAAGTCGTCTCGTCGATGGAGGATGCGGCAGAAACATTGA
TAGACGAAGTTTGCTCCGCTGGGGTAGAGCGCCTCGACGAAGTACGCGCG
ACAGGGGAAAATCTGGAACAGAGCACCGTCGCCGATGGTCGTCAAAGCGT
GGCTAGTTCGAATGTAAGTGGCACTATGTGCGATGAGTGTTGCATGCAGC
AATTGCACATGCAGCTAAACAAATGCTTCCCCCGATACAAAAGTGGTAAC
TTGATGCACTCGGCAATAACCCTAGCTGCATGTAAGACACATTTTCACCA
CCACACTGTGGAGTCTGAAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig29887:126..2095+ >mRNA_H-paniculata_contig29887.8115.1 ID=mRNA_H-paniculata_contig29887.8115.1|Name=mRNA_H-paniculata_contig29887.8115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2340bp|location=Sequence derived from alignment at H-paniculata_contig29887:126..2095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACACAGTGATGGAGATAATGAGGTGTTCGAGGAGATTCGGGAGGAGCT
GAGAAAAGTCCAATCTTCCATGTCCATCATGCAAGAAGTCAAGAACTTTG
CAGAGGAGTCGCAAAAGACTACGTCAGAGATGGCGGCGGTACACAGTGAT
GGAGATAATGAGGTGTTCGAGGAGATTCGGGAGGAGCTGAGAAAAGTCCA
ATCTTCCATGTCCATCATGCAAGAAGTCAAGAACTTTGCAGAGGAGTCGC
AAAAGACTACGTCAGAGATGGCGGCGGTCCACAGTGATGCAGATAATGAG
GTGTTGGAGGAGATTCGGGAGGGGCTGAGAAAACTCCAATCTTCCATGTC
CATCATGCAAGAAGTCAAGAACATTGTAGAGGAGACGCGAAAGACTACGT
CGGAGATGGCGGCGGTCCACAGTGATGCAGATAATGAGGTGTTGGAGGAG
ATTCGGGAGGGGCTGAGAAAACTCCAATCTTCCATGTCCATCATGCAAGA
AGTCAAGAACATTGTAGAGGAGACGCGAAAGACTACGTCGGAGATGGCGG
CGGTCCACAGTGATGCAAAGAGTGAGGAGCTGAGAAAAATGCTATCTTCT
ATGCCCACCATGGACGAAGTCAAGAACATTGTAGAGGAGTCGCAAAAGAC
TGCTACGTCGGAGATGGCGGCAAGGATGGAAGAGCAGATGAAGGAGTTGA
GACGTGTGGAACCGCATCTGTCTGCCCTCCTGCGAGAGACGGCGAGGACA
CTAGCCGTCCTGACGGTTCGCATTCCAACCCATGTGGTGCTCTTGCCTCC
GCGGCAAAACGAGTCTGAAAACCTGAGAGAGGAGGAAAGAGAGGAACAAA
ACTGGACAAAGAGGTGGAAGACGTGGCATGATGAGGGCAAGAAGGCCGGG
AAAGGCAGGATAACGAAGGAGTTTAGACTGTTCTTTCTCTGTGGACACGA
CAACAGCCTTGCAGAATGTGGGCTTGAAGGAAAGGGGTACCGGATAGAGA
CTCCGCGAACGTGGGTGAAAAAGAGTGTCCCGTTCGCCAAGGCCCTACTG
GTCGTCCTAAATATCACGCTGAAGAGCGTCGCAGGGTTGAGCATTCCCGT
TGAAGAGATCGCAGGTGCAGATGAACAATGGTGGGGTAAAGTCGTCTCGT
CGATGGAGGATGCGGCAGAAACATTGATAGACGAAGTTTGCTCCGCTGGG
GTAGAGCGCCTCGACGAAGTACGCGCGACAGGGGAAAATCTGGAACAGAG
CACCGTCGCCGATGGTCGTCAAAGCGTGGCTAGTTCGAATGTAAGTGGCA
CTATGTGCGATGAGTGTTGCATGCAGCAATTGCACATGCAGCTAAACAAA
TGCTTCCCCCGATACAAAAGTGGTAACTTGATGCACTCGGCAATAACCCT
AGCTGCATGTAAGACACATTTTCACCACCACACTGTGGAGTCTGAAGTCC
ACAGTGATGCAAAGAGTGAGGAGCTGAGAAAAATGCTATCTTCTATGCCC
ACCATGGACGAAGTCAAGAACATTGTAGAGGAGTCGCAAAAGACTGCTAC
GTCGGAGATGGCGGCAAGGATGGAAGAGCAGATGAAGGAGTTGAGACGTG
TGGAACCGCATCTGTCTGCCCTCCTGCGAGAGACGGCGAGGACACTAGCC
GTCCTGACGGTTCGCATTCCAACCCATGTGGTGCTCTTGCCTCCGCGGCA
AAACGAGTCTGAAAACCTGAGAGAGGAGGAAAGAGAGGAACAAAACTGGA
CAAAGAGGTGGAAGACGTGGCATGATGAGGGCAAGAAGGCCGGGAAAGGC
AGGATAACGAAGGAGTTTAGACTGTTCTTTCTCTGTGGACACGACAACAG
CCTTGCAGAATGTGGGCTTGAAGGAAAGGGGTACCGGATAGAGACTCCGC
GAACGTGGGTGAAAAAGAGTGTCCCGTTCGCCAAGGCCCTACTGGTCGTC
CTAAATATCACGCTGAAGAGCGTCGCAGGGTTGAGCATTCCCGTTGAAGA
GATCGCAGGTGCAGATGAACAATGGTGGGGTAAAGTCGTCTCGTCGATGG
AGGATGCGGCAGAAACATTGATAGACGAAGTTTGCTCCGCTGGGGTAGAG
CGCCTCGACGAAGTACGCGCGACAGGGGAAAATCTGGAACAGAGCACCGT
CGCCGATGGTCGTCAAAGCGTGGCTAGTTCGAATGTAAGTGGCACTATGT
GCGATGAGTGTTGCATGCAGCAATTGCACATGCAGCTAAACAAATGCTTC
CCCCGATACAAAAGTGGTAACTTGATGCACTCGGCAATAACCCTAGCTGC
ATGTAAGACACATTTTCACCACCACACTGTGGAGTCTGAA back to top
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