mRNA_H-paniculata_contig2988.8113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Match: D7FUF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF1_ECTSI) HSP 1 Score: 297 bits (760), Expect = 3.630e-77 Identity = 164/244 (67.21%), Postives = 188/244 (77.05%), Query Frame = 1
Query: 598 QGMDRKRIGGSTTHMDGMGSFTAIGGVKAGEKSVTAFETQDCATALAIAKFKSFAKPGGSSYVVNNRIDDDLTLRSRFCAAGVRYCTFPIRQGDAYLVPSGSLHEFMNVIPCLSVAWNIMPHPVNCKSAMSMAEKSAEEAETVLGVDTDRSQSAIEHAPPDSMKERHAAYVIKRALVHRILLKRRQLRQPSIVPKTERSAREMSTARRDEATASKEASEL----KLSSAVSKYFLCVRDPRDYY 1317
QG R RIGGSTTHMDGMGSFTAIGG+KAGEKSVTAFE++DCATALA+AKFK+FAKPGGSSYVVN+RIDDD TLR+R AGVRY TFPIR+G+AYLVPSG LHEFMNVIPCLSVAWNIMPHP NC+ AM MAE SAEEA+ LGV+TDRS SAIEHAPP+SM+ERHAA+VIK AL ILL+RR P + R +R A ++K A+E KL + + K FL +R YY
Sbjct: 2 QGKGRDRIGGSTTHMDGMGSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRLHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASAEEAQAELGVNTDRSASAIEHAPPESMRERHAAWVIKTALERGILLRRRWASDPGSAGSSG-GGRVCGPSRPPTAESNKAAAEAAARHKLPADMWKKFLFMRPSEHYY 244
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Match: A0A6H5KVS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS1_9PHAE) HSP 1 Score: 273 bits (698), Expect = 1.050e-69 Identity = 152/228 (66.67%), Postives = 176/228 (77.19%), Query Frame = 1
Query: 649 MGSFTAIGGVKAGEKSVTAFETQDCATALAIAKFKSFAKPGGSSYVVNNRIDDDLTLRSRFCAAGVRYCTFPIRQGDAYLVPSGSLHEFMNVIPCLSVAWNIMPHPVNCKSAMSMAEKSAEEAETVLGVDTDRSQSAIEHAPPDSMKERHAAYVIKRALVHRILLKRRQLRQP-SIVPKTERSAREMSTARRDEATASKEASEL----KLSSAVSKYFLCVRDPRDYY 1317
MGSFTAIGG+KAGEKSVTAFE++DCATALA+AKFK+FAKPGGSSYVVN+RIDDD TLR+RF AGVRY TFPIR+G+AYLVPSG LHEFMNVIPCLSVAWNIMPHP NC+ AM MAE S EEA+ LGV+TDRS SAIEHAPP+SM+ERHAA+VIK AL ILL+RR P S + RE +R A ++K A+E KL + + K FL +R YY
Sbjct: 1 MGSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRFHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASVEEAQAELGVNTDRSASAIEHAPPESMRERHAAWVIKTALERGILLRRRWASDPDSRSGGSSGGGRECGPSRPPTAESNKAAAETAARHKLPADMWKKFLFMRPSEHYY 228
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI) HSP 1 Score: 242 bits (618), Expect = 5.620e-64 Identity = 114/171 (66.67%), Postives = 139/171 (81.29%), Query Frame = 1
Query: 1 VSQPPIEHPPAGILPFLDMTSLTDTGFRLARFTRDDCCFMGPEGIAAKVDLCWKHRIFAVVEGAFDEQRQPLMEFLERKKSMACKISGKASTGEASSTMGDYMQKLG--VAD-KANKPTKDNPGTFFLDTAHGQSEILEWLSDDPFMKSLMPESERGGLCEHLLGDRCKFG 504
V PP+ PPAGILPFLD+ ++ DTGFRLARF+R+DC FMGP+ + AKVDLCWKHRIFA+VEGAFD Q QPLM+FL+ +KS+ACK+SGKA++GEASSTMGDY KL + D K + KDNPGTFFLDT GQ+++L WL DP MK L+PE+ERGGL EH+ G+RCKFG
Sbjct: 475 VEIPPVCCPPAGILPFLDVDAIKDTGFRLARFSREDCSFMGPDCVVAKVDLCWKHRIFAIVEGAFDPQIQPLMDFLQERKSLACKLSGKAASGEASSTMGDYRSKLADRIRDGKESAKAKDNPGTFFLDTTTGQADVLNWLPTDPLMKGLIPEAERGGLAEHIHGERCKFG 645
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Match: A0A7S3Y1V6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1V6_HETAK) HSP 1 Score: 168 bits (425), Expect = 1.840e-41 Identity = 106/311 (34.08%), Postives = 162/311 (52.09%), Query Frame = 1
Query: 154 CWKHRIFAVVEGAFDEQRQPLMEFLERKKSMACKISGKASTGEASSTMGDYMQKLGVADKANKPTKDNPGTFFLDTAHGQSEILEWLSDDPFMKS-LMPESERGGLCEHLL--GDRCKFGPFTFGGGRNYPLVEREAAAESSGRMSQRQYEQGMDRKRIGGSTTHMDGMGSFTAIGGVKAGEKSVTAFETQDCATALAIAKFKSFAKPGGSSYVVNNRIDDDLTLRSRFCAAGVRYCTFPIRQGDAYLVPSGSLHEFMNVIPCLSVAWNIMPHP-VNCKSAMSMAEKSAEEAETVLGVDTDRSQSAIEHAP 1074
C ++ +F V+EGAF LME+LE K ++ +SG+ GE +T+ + +L AD+AN N G F A+ Q E L ++ + ++ + +P + GL E G R ++GP TFGG ++ + ++ + GGST HMDGMG+ A GG+K G K +TA +D AL A F ++AKPGGS ++VN I +R + G+R+ F +++GDAY++P+G HEF N+ P +SVAWN +P P +A S+ S E L R Q A++ AP
Sbjct: 17 CEQNGVFMVIEGAFLNHTVNLMEWLESNKGISTDVSGRDQRGERHATLEAFATRLSDADRANARQDGNVGNFSYFEANKQLEDLGNIAGEKWLFARFLPWGDLSGLAEFTAIDGHRTRYGPSTFGGDKSREVAQKSKRGTGF---------------QFGGSTMHMDGMGTTVACGGMKDGLKLITAVAPEDAPQALRAAGFTTYAKPGGSRHLVNPPIGP--AVRRLWARLGIRFACFELKKGDAYVIPAGVPHEFQNLEPSVSVAWNYLPSPGFQSAAACSLLAYSLAELRENLQRQPQRQQEALDFAP 310
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Match: L1K4C4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K4C4_GUITC) HSP 1 Score: 174 bits (440), Expect = 5.150e-40 Identity = 124/411 (30.17%), Postives = 206/411 (50.12%), Query Frame = 1
Query: 28 PAGILPFLDMTSLTDTGFRLARFTRDDCCFMGPEGIAAKVDLCWKHRIFAVVEGAFDEQRQPLMEFLERKKSMACKISGKASTGEASSTMGDYMQKLGVADKANKPTK----DNPGTFFLDTAHGQSEILEWLSDDPFMKSLMPESERGGLCEHLLGDRC-KFGPFTFGGGRNYPLVEREAAAESSGRMSQRQYEQGMDRKRI----------GGSTTHMDGMGSFTAIGGVKAGEKSVTAFETQDCATALAIAKFKSFAKPGGSSYVVNNRID-------DDLTLRSRFCAAGVRYCTFPIRQGDAYLVPSGSLHEFMNVIPCLSVAWNIMPHPVNCKSAMS-------MAEKSAEEAETVLGVDTDRSQSAIEHAP---------PDSMKERHAAYVIKRALVHRILLK 1146
P + PFL ++ L + F L R + M + + ++ +HR+F ++EGAF+ + + ++L + S ++SG+ GE + +G Y+ + +K + GTF + + +L+ +P L + L ++ ++GP+ FGG + E AAA+ + + Q+E M ++R+ GGST H+DGMGS AIGG+K G+K VTA E D + AL IA FKS+AKPGGSS++ N+ +D + +L+ + + VR+ TF I GDAY++P+G HEF+N P LS+AWNI+P +C+ + + + ++ + ET DR SAI+HAP PD + + + A HR ++K
Sbjct: 60 PEILRPFL-VSPLAGSNFNLCRISFKQMMAMTSSELESAINAAMEHRVFLIMEGAFEVLKTNMDKWLSDRSSFVAQLSGRDRKGELCTELGSYLSAMRSYEKGLSNFECAWSGALGTFTCKNIMLYQDDMLFLNTHDVFSKFLPWGRASLLRDSLDSEQSMQYGPYLFGGDKMRGSCE--AAAKDALSNQECQFEPLMSKRRVRYRGDKKDGLGGSTMHLDGMGSLVAIGGLKCGKKLVTAVEACDASLALKIAGFKSYAKPGGSSFLTNDPVDRSFSGEEESCSLKDLWTMSHVRWGTFEISAGDAYVIPAGMPHEFLNQEPSLSIAWNILP---SCEQSSASEPWHFLLLLQALHDVETDFSGSPDRMMSAIDHAPIPLLVANVFPDLVSVENPMHCASCACKHREMIK 464 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2988.8113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2988.8113.1 >prot_H-paniculata_contig2988.8113.1 ID=prot_H-paniculata_contig2988.8113.1|Name=mRNA_H-paniculata_contig2988.8113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2456bp MTSLTDTGFRLARFTRDDCCFMGPEGIAAKVDLCWKHRIFAVVEGAFDEQback to top mRNA from alignment at H-paniculata_contig2988:1862..19049- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2988.8113.1 ID=mRNA_H-paniculata_contig2988.8113.1|Name=mRNA_H-paniculata_contig2988.8113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17188bp|location=Sequence derived from alignment at H-paniculata_contig2988:1862..19049- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2988:1862..19049- >mRNA_H-paniculata_contig2988.8113.1 ID=mRNA_H-paniculata_contig2988.8113.1|Name=mRNA_H-paniculata_contig2988.8113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=14736bp|location=Sequence derived from alignment at H-paniculata_contig2988:1862..19049- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |