mRNA_H-paniculata_contig29870.8112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29870.8112.1
Unique NamemRNA_H-paniculata_contig29870.8112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29870.8112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29870contigH-paniculata_contig29870:2299..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size649
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29870.8112.1prot_H-paniculata_contig29870.8112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29870 2529..2867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.1117425-UTR-H-paniculata_contig29870:2298..25281622929912.1117425-UTR-H-paniculata_contig29870:2298..2528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29870 2299..2528 +
1691481066.2916236-UTR-H-paniculata_contig29870:2298..25281691481066.2916236-UTR-H-paniculata_contig29870:2298..2528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29870 2299..2528 +
1622929912.1412985-UTR-H-paniculata_contig29870:2867..29471622929912.1412985-UTR-H-paniculata_contig29870:2867..2947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29870 2868..2947 +
1691481066.308441-UTR-H-paniculata_contig29870:2867..29471691481066.308441-UTR-H-paniculata_contig29870:2867..2947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29870 2868..2947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.126192-CDS-H-paniculata_contig29870:2528..28671622929912.126192-CDS-H-paniculata_contig29870:2528..2867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29870 2529..2867 +
1691481066.300102-CDS-H-paniculata_contig29870:2528..28671691481066.300102-CDS-H-paniculata_contig29870:2528..2867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29870 2529..2867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29870.8112.1

>prot_H-paniculata_contig29870.8112.1 ID=prot_H-paniculata_contig29870.8112.1|Name=mRNA_H-paniculata_contig29870.8112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MCSDCPFATPTEVFASLTGNTIRCPGNWASSCGTRLSEMIVMPAAESSTV
SPVSGAASAPPPGSKTQAVVWNLSVSISTVPTTSSSSTVPISASATRSLA
SFSSVRVDTRLL*
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mRNA from alignment at H-paniculata_contig29870:2299..2947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29870.8112.1 ID=mRNA_H-paniculata_contig29870.8112.1|Name=mRNA_H-paniculata_contig29870.8112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=649bp|location=Sequence derived from alignment at H-paniculata_contig29870:2299..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGCGCGACTCCCCCCTGGCAGCTCCTGGCCCCCGCACGGACGACTTT
CCCAAGCCCCTCTCGATACGCGCCCGGTTCTCTGCCATCGTGCGCATGAT
GTCGAAGTCCAGCTCTGTGCCGATGATCAAGCTGTTGTCTCCGCCCGGCA
TGATGGCGAAGGAAAGGAACAATAAAACCGCCCCCCATGGCATCTGCACG
GCAACCTGCAGTCGCCGCGTCTAGTACACCATGTGCTCGGACTGTCCATT
CGCCACCCCGACCGAGGTCTTCGCGTCCCTGACAGGGAACACGATCCGTT
GTCCGGGAAACTGGGCTTCCAGCTGCGGGACCAGGCTCTCCGAGATGATT
GTGATGCCGGCGGCAGAGTCCAGCACGGTCTCTCCGGTCAGCGGTGCAGC
ATCGGCGCCGCCACCAGGCAGCAAGACACAGGCGGTGGTGTGGAACTTGA
GCGTCTCGATATCTACGGTGCCCACCACGTCGTCGTCGTCGACCGTCCCG
ATCTCAGCATCCGCCACACGCTCACTCGCATCCTTCTCGTCAGTGCGCGT
CGACACCCGGTTACTATGAGCTTGCGGGCCTCCAACAGGCGCCGCCTTGC
CTGAGCCGTTCGCCGACATTGCCCCTTCGGCGCTTAGCTTGAGTGCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig29870:2299..2947+

>mRNA_H-paniculata_contig29870.8112.1 ID=mRNA_H-paniculata_contig29870.8112.1|Name=mRNA_H-paniculata_contig29870.8112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig29870:2299..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTCGGACTGTCCATTCGCCACCCCGACCGAGGTCTTCGCGTCCCT
GACAGGGAACACGATCCGTTGTCCGGGAAACTGGGCTTCCAGCTGCGGGA
CCAGGCTCTCCGAGATGATTGTGATGCCGGCGGCAGAGTCCAGCACGGTC
TCTCCGGTCAGCGGTGCAGCATCGGCGCCGCCACCAGGCAGCAAGACACA
GGCGGTGGTGTGGAACTTGAGCGTCTCGATATCTACGGTGCCCACCACGT
CGTCGTCGTCGACCGTCCCGATCTCAGCATCCGCCACACGCTCACTCGCA
TCCTTCTCGTCAGTGCGCGTCGACACCCGGTTACTATGAATGTGCTCGGA
CTGTCCATTCGCCACCCCGACCGAGGTCTTCGCGTCCCTGACAGGGAACA
CGATCCGTTGTCCGGGAAACTGGGCTTCCAGCTGCGGGACCAGGCTCTCC
GAGATGATTGTGATGCCGGCGGCAGAGTCCAGCACGGTCTCTCCGGTCAG
CGGTGCAGCATCGGCGCCGCCACCAGGCAGCAAGACACAGGCGGTGGTGT
GGAACTTGAGCGTCTCGATATCTACGGTGCCCACCACGTCGTCGTCGTCG
ACCGTCCCGATCTCAGCATCCGCCACACGCTCACTCGCATCCTTCTCGTC
AGTGCGCGTCGACACCCGGTTACTATGA
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