mRNA_H-paniculata_contig2987.8111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2987.8111.1
Unique NamemRNA_H-paniculata_contig2987.8111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A6H5L2H1_9PHAE (Acylphosphatase-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2H1_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 6.650e-67
Identity = 122/195 (62.56%), Postives = 139/195 (71.28%), Query Frame = 1 
Query:  184 LCFLLVAVGLSCSWGFMLPATASPS-SCRAMARSSQGCPLSLTSCIG-SRDPFD---KRRVFHPSSGLRMGD-----GLEVDGGSSDGTALAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEVFPETGTATNKAAGRP 738
            L F+  A  L  S GFM  A  + S SC   +    G P ++ +C G SR        R   + SS LRMG+     GL  DGGSSDGTALAEARI+V+GQS+GGYFRAHARNEAHFNRKLCGALKELG G TEIIVEGKTSAIRSFLRWCK+GPGLSQ I++VTVDW+EYTGIFDGFEVFP+  +    AAG P
Sbjct:    7 LSFIATASSLRRSSGFMFAAAGARSGSCSKWS----GVPCTMHACKGPSRTAIPASASRGWCYASSSLRMGETAGEEGLAADGGSSDGTALAEARILVQGQSTGGYFRAHARNEAHFNRKLCGALKELGQGQTEIIVEGKTSAIRSFLRWCKRGPGLSQQIQEVTVDWAEYTGIFDGFEVFPDETSQNTAAAGAP 197
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A835YRR3_9STRA (Acylphosphatase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.870e-35
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 1 
Query:  412 DGTALAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEVFPETGTA-----TNKAAGRP 738
            D  A+AEA+IVV GQ+ GGYFRAHARNEAH+ R+L GAL+E     TEIIVEGK SAI SF+RWC+KGPGLSQ I  V V +SE+TGIFDGF V P+   A       K+AG P
Sbjct:   56 DAGAMAEAKIVVSGQAYGGYFRAHARNEAHYMRRLSGALQEYPD-RTEIIVEGKRSAIDSFVRWCRKGPGLSQQISTVEVTFSEHTGIFDGFRVIPDPSKAGPAAPVTKSAGLP 168
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A6V2T9H1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T9H1_HETAK)

HSP 1 Score: 116 bits (290), Expect = 4.170e-27
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  382 DGLEVDGGSSDGTALAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEVFPE 702
            DG +    S DG  + +A+I V GQ  GG++RA A+ EA F+R+L G +++L  G  EI+VEG    + SF+ WCK+GPGL+Q I  V V+WS  TGIFD FE FP+
Sbjct:   93 DGEKESNKSDDGKEVVQAKITVSGQVQGGFYRAMAKKEASFHRRLVGGIRDLRCGSVEIVVEGPRKKLESFIGWCKRGPGLTQAISQVEVEWSPSTGIFDSFETFPD 199
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A7S2XVC5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.820e-27
Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:  424 LAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEVF 696
            + +A+I+++GQ  GGYFRA  +NEA   R L GAL+EL  G T+++VEG    I SFL+WCK+GPGL+Q+++DV V+W + TGIFD FEVF
Sbjct:   64 IMQAKILLKGQVQGGYFRAQCKNEAFRFRGLLGALRELPDGSTKVVVEGPEQKILSFLKWCKRGPGLTQIVDDVQVEWLDSTGIFDTFEVF 154
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A7R9UAZ5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAZ5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.260e-18
Identity = 44/98 (44.90%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:  406 SSDGTALAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGP-GLSQLIEDVTVDWSEYTGIFDGFEVF 696
            ++D  A  +A++++ G +SGGYFRA  RNEA F+R L G LKEL  G +EI++EG+  +I +FLR+C+K   GLSQ I   ++++++ TG F  F+V+
Sbjct:    5 AADTAAKTQAKVLLSGDASGGYFRACMRNEAKFHRSLKGYLKELELGKSEIVLEGRRGSIDAFLRYCRKNALGLSQRIVIDSIEYTDVTGEFSDFDVY 102
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A3M1D161_9DELT (Acylphosphatase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D161_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 4.070e-13
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  439 IVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEV 693
            + + G+  G ++RA AR+EA     L G +K L  G  E++ EG    +   L WC++GP  ++ ++DVTV+W EY+G +DGFEV
Sbjct:    9 LYIEGRVQGVFYRASARDEAR-RLGLSGWVKNLPDGRVELLAEGPRDRLEQLLAWCRQGPPAAR-VDDVTVEWGEYSGSYDGFEV 91
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A661SIQ6_9DELT (Acylphosphatase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661SIQ6_9DELT)

HSP 1 Score: 72.4 bits (176), Expect = 2.740e-12
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:  433 ARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEV 693
            A  ++ G+  G  FR   R  A   R + G ++ L  G  E + EGK S ++S L+WC+ GP L+  +  VTVDW +YTG FD FE+
Sbjct:    6 AHALIEGRVQGVCFRMDTRRAA-LERNVMGWVRNLPDGRVEALFEGKESDVKSMLKWCESGPVLAS-VRKVTVDWRDYTGKFDSFEI 90
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A842KUY4_9ARCH (Acylphosphatase n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A842KUY4_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 4.750e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:  424 LAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEV 693
            L  A+I V G   G +FRA+ R+ A     L G ++ L  G  EI  EG+  A++  + WCK GP  + ++EDV V+W EY+G +  F++
Sbjct:    4 LKAAKIYVSGLVQGVFFRAYTRSRARA-LGLKGWVRNLDDGRVEIFAEGEEGALKKLIEWCKVGPPHA-IVEDVKVEWCEYSGKYSSFDI 91
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A7C4MIP9_9ARCH (Acylphosphatase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C4MIP9_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 6.510e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  433 ARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEV 693
            A+I V G   G +FRA+ RN A  +  L G ++ L  G  EI  EG+  A++  + WCK GP  + ++EDV V+W EY+G +  F++
Sbjct:    7 AKIYVSGLVQGVFFRAYTRNMAR-SLGLKGWVRNLPDGRVEIYAEGEEDALKKLVEWCKVGPPHA-IVEDVKVEWCEYSGKYGSFDI 91
[Close]
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Match: A0A497FU72_9CREN (Acylphosphatase n=2 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A497FU72_9CREN)

HSP 1 Score: 63.2 bits (152), Expect = 5.490e-9
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  424 LAEARIVVRGQSSGGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKKGPGLSQLIEDVTVDWSEYTGIFDGFEV 693
            +  A + + G   G +FRA+ R  A     + G +K L  G  E ++EG   A++  ++W  +GP L++ ++ V V+W EY G FD FEV
Sbjct:    4 MVRAHLFISGIVQGVFFRANMRRVARMYG-VKGWVKNLPDGRVEAVLEGPEDAVKKVIKWAHRGPPLAR-VDKVDVEWEEYRGEFDDFEV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2987.8111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L2H1_9PHAE6.650e-6762.56Acylphosphatase-like domain-containing protein n=2... [more]
A0A835YRR3_9STRA2.870e-3562.28Acylphosphatase-like domain-containing protein n=1... [more]
A0A6V2T9H1_HETAK4.170e-2748.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XVC5_9STRA8.820e-2754.95Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7R9UAZ5_9STRA3.260e-1844.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A3M1D161_9DELT4.070e-1340.00Acylphosphatase n=1 Tax=Deltaproteobacteria bacter... [more]
A0A661SIQ6_9DELT2.740e-1240.23Acylphosphatase n=2 Tax=Deltaproteobacteria bacter... [more]
A0A842KUY4_9ARCH4.750e-1137.78Acylphosphatase n=1 Tax=Nitrososphaeria archaeon T... [more]
A0A7C4MIP9_9ARCH6.510e-1139.08Acylphosphatase n=1 Tax=Candidatus Bathyarchaeota ... [more]
A0A497FU72_9CREN5.490e-934.44Acylphosphatase n=2 Tax=Thermoprotei archaeon TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2987contigH-paniculata_contig2987:11642..18232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue1.6e-52
Seed eggNOG ortholog2880.D8LR73
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Acylphosphatase
EggNOG OGs2C3YV@1,2SES2@2759
Ec32 ortholog descriptionAcylphosphatase-like domain
Ec32 orthologEc-06_004110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1147
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.9397573-UTR-H-paniculata_contig2987:11641..118031622929911.9397573-UTR-H-paniculata_contig2987:11641..11803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2987 11642..11803 +
1691481066.2283814-UTR-H-paniculata_contig2987:11641..118031691481066.2283814-UTR-H-paniculata_contig2987:11641..11803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2987 11642..11803 +
1622929912.0510516-UTR-H-paniculata_contig2987:17826..182321622929912.0510516-UTR-H-paniculata_contig2987:17826..18232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2987 17827..18232 +
1691481066.284112-UTR-H-paniculata_contig2987:17826..182321691481066.284112-UTR-H-paniculata_contig2987:17826..18232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2987 17827..18232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.9584076-CDS-H-paniculata_contig2987:11803..119691622929911.9584076-CDS-H-paniculata_contig2987:11803..11969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 11804..11969 +
1691481066.237827-CDS-H-paniculata_contig2987:11803..119691691481066.237827-CDS-H-paniculata_contig2987:11803..11969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 11804..11969 +
1622929911.975175-CDS-H-paniculata_contig2987:14501..146291622929911.975175-CDS-H-paniculata_contig2987:14501..14629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 14502..14629 +
1691481066.245335-CDS-H-paniculata_contig2987:14501..146291691481066.245335-CDS-H-paniculata_contig2987:14501..14629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 14502..14629 +
1622929911.9908867-CDS-H-paniculata_contig2987:15078..152411622929911.9908867-CDS-H-paniculata_contig2987:15078..15241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 15079..15241 +
1691481066.2527938-CDS-H-paniculata_contig2987:15078..152411691481066.2527938-CDS-H-paniculata_contig2987:15078..15241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 15079..15241 +
1622929912.0108914-CDS-H-paniculata_contig2987:16319..163901622929912.0108914-CDS-H-paniculata_contig2987:16319..16390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 16320..16390 +
1691481066.2679927-CDS-H-paniculata_contig2987:16319..163901691481066.2679927-CDS-H-paniculata_contig2987:16319..16390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 16320..16390 +
1622929912.0311215-CDS-H-paniculata_contig2987:17775..178261622929912.0311215-CDS-H-paniculata_contig2987:17775..17826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 17776..17826 +
1691481066.2763844-CDS-H-paniculata_contig2987:17775..178261691481066.2763844-CDS-H-paniculata_contig2987:17775..17826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2987 17776..17826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2987.8111.1prot_H-paniculata_contig2987.8111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2987 11804..17826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2987.8111.1

>prot_H-paniculata_contig2987.8111.1 ID=prot_H-paniculata_contig2987.8111.1|Name=mRNA_H-paniculata_contig2987.8111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MRVVAPALCFLLVAVGLSCSWGFMLPATASPSSCRAMARSSQGCPLSLTS
CIGSRDPFDKRRVFHPSSGLRMGDGLEVDGGSSDGTALAEARIVVRGQSS
GGYFRAHARNEAHFNRKLCGALKELGGGHTEIIVEGKTSAIRSFLRWCKK
GPGLSQLIEDVTVDWSEYTGIFDGFEVFPETGTATNKAAGRP*
back to top

mRNA from alignment at H-paniculata_contig2987:11642..18232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2987.8111.1 ID=mRNA_H-paniculata_contig2987.8111.1|Name=mRNA_H-paniculata_contig2987.8111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6591bp|location=Sequence derived from alignment at H-paniculata_contig2987:11642..18232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGACTCAGAGGACTCTGTACATGGTATTTAGCTTTGAGTGCGACC
GCTAATCCACGCTCCACGCACTACATTGACGTTCTTTGGGCGTGCTTCTG
TCTTGTGGAAGAACGGTAGTCTTGCTGGAGAGAGATCGAGAGGGCGAGAG
CGAGAGAGCAACATGAGGGTTGTTGCACCGGCCTTGTGTTTCCTACTTGT
AGCAGTGGGGCTCTCCTGTTCTTGGGGGTTCATGTTGCCTGCGACAGCAT
CACCGTCCTCGTGTCGTGCAATGGCCAGGTCTTCCCAGGGGTGCCCACTT
TCTCTGACTTCATGTATCGGTAGCAGAGGTAGGTGCTGGAAGTTACTCTA
ATGGTCTTTAACAAGCACAAGGTCAGTCTTGTTGTTCATGATCTTGCCCC
TCCTGCACAAGTATCCTGCTGAGGATTGTGGGGACCTGCGGGCTCGCAGA
CGAAGGATCATGATGGTTGCGTTGCGCTGTACCGTATGCCACCATGTAGT
GGGTAAGGATTCGGTTGGCGATAGCATGCGCTGCATGTCGGGGTATTGTA
TCCTGGGCTGCGTGGAGATACACATGCATAGACGGCCCTTGTGAGTGGTA
TGATGGCTTTTATGTATATCTGTTGTTGCGTCAAATATTGAACACGTGTC
CGTTCAACTGGCAAATTGAACTTCGGTTTCTGGCTGAGAGGCAAAAGGCG
CTGTTGTATCACACGCTGTCAACGCGGTGTCAACGTGTCAACTTATGACC
TAATCTGTCTGCGCAGTACGGAACTAGACAGTGCAACATTGTAGTGCAAT
ATAACTCTAATGTTTGTATCGAACTACACTTCATGCGGTTGAGGTGGGTG
CCCAGTCCGCGACCCCGTGTCTTTCTTCAACCCCACCCTCCCCATACCGT
TGTTAGCTCGCCACTGCCTACTCGGAGAATTCCTAGCGGCGAAATCGAGG
TTTTGGAGATGAGGGGTTGCCAAAACAAGGGGGGGAGGGTTAGTGTAAAA
ACACGTACACATGCATCTCAAACGATTATAAGATCAATATGCATCTTGAC
CGGAGAGTGTTTCGGAACAAAAAGGAGTGTCTGGCAGTAAATGGTAAGCG
CTGCAGTCGTTGTACGTAAAGTCATGTCAACTCCGTTTACGCTCGATGTA
CTACCCCTACTGAACTTGACACTATTGTTGGAGTTAGCGACGAGTGCTCA
ATGCCGTGTGGGTCAGACGTCAAATGTTCTCGGTATTTCACATGCCGTTG
AATGAGATCCCCGAACGTCCTGTTTTGTTCCCTACCTACATAGCTCATTC
GTCTCCGCTTGAACCTCGCACGCAAGGGTGCTGCAATGCTATGCTACGCT
GCAACTGTCTGCGCAGTCGTAACGACTTTTAACCCTTTCAGCGTCGGAGA
TTGCGTCAGAACAAAATGTCGTTCGGTCGAGCACTGCAGCTGTCATGGGC
AGAAAACCACGCCTACTACCTTTCTGTGCTGCATACCCTGCTTGTACTGG
ACTGTCTGTCTGTCTGGACAGCGGTGACTCCCTATCCCCATAATTATGCC
GCAGACATCGTTTCCCCCCCATTTTCGAGGAAGGGAATAAATAGTCATTA
GATTGGGAGTATTCGGGAACCGGCGCTTAAGAGGTTGAGAACACGAACGA
GTGCATCCAAAAGATAGGAAATTCCTTGAACTCGGGGGAATATCCGTGAA
CAACAGAGGGTTTCATGTATCACCTGTCCACGCTTCTGTTTACTTGACCA
GAAATCTGACTTCCTCGTCGGGACACATATCTATTTCCTGGAAATTTCTT
CATGGACGTGGAGACAACTCTCCTCCGCCTGTTTCAACACATACAGCGTG
AGATACTCAGGCCAAGAATACCTCGCTCCAAATGGAAAATCTCTTCGTGT
AACGTTACAATTGGACTGTCTGTAAGGGGTGATGGATGTATTTTGGCATG
GAAATTGGACCCTTCCTTGGGGTTTGAACGACCTCAAAGCCACATCTATA
CACAAGATCACCACTCACCGCTTTTTGTATTTTTTTACGCCAGTGTATTA
GCTCAGAAACAAGCAAAAACGAAACCGGGGATAAATCGGTCAGTCACACA
ACGGTCCAGTCGTAACATTCTTAACGGGGGTTGCTGTGTGATCCCGCCTT
GACTCACTGCGCCCTGGCAGCGCGAACGCCTGGCCTCTGGTCTCGACCTC
CAGTTGCAGGTACTACTAGTATCTTACCGCGCTCTAATCTTGTTATCATT
ATGTTACCATTGTGCGAAACACCATATCCTTGTATTTTGTCACAGACCAA
TAGACAGACACATACCCCATACCGGCGTACCATGCACGTCGTTTTTTGTT
TATCTGCTTCGCTTGTATATTTTTACGCCGTAGATGTTTTGTTTTGCACA
AGGTTCATGGAAACGCCACACCCTTCCGCCGCATACAGTTTTATTCAATA
CTAGCAGTAGAATCACGGCTATGCCCGCGCAGTTGGTACCTGTCCTTGAC
CTTCGGATTCGCTGCGCTCGCCGTGGCTCGTTGCGCTGGCATAAAACTTG
TTGTTCAGGAATCACTTGGGCACTTCATTACAAACAAATGTCCCGACACG
ATCGTCACCACCACCTACCCCACCGTATTCAACAGTTAGAAGTAGCAGTA
GAGCCACGGCTATGCCCGTACAATTCATGCTTATCCTTGACACGTGGACT
CGCGACTCTTGCCTGAAGATTAGCTGTTGCCTAAGTTACCTGAGTATATA
TTAGAAAAGTGGTCTTGAGTGAGAACCATAGCCACAACCATCTTACCGTA
CCAAATAATTCGGGGTGTAGAATATTTTCACCCGTTTCCATGGTGACTGG
TTGCTTGTAGATCCTTTCGACAAGAGGCGAGTGTTCCACCCAAGTTCCGG
GTTGCGAATGGGAGATGGCTTAGAGGTGGACGGCGGGAGCAGCGACGGGA
CGGCACTAGCCGAAGCCAGGATTGTGGTTCGTGGACAGGTGTGGGTGGGA
TTTGGAGGCGTCGTCGTCCTGACTTGTTTGTATTTTCTTTTGTTGGGAGT
CGGGGGGGGGGGGGCGTGGAACATCTTCTAAAGGAGAACGCCAAGTTCCG
TAGAGTGCTCTGAGAACACCTCGGGCGCGAATTTTTTTATTGGTCGATTT
GATCGACAGCATAGCTCATGTGCGCTCAATAAAGCTATCTCCAGTTTTTA
TCAATTGACTGATAACTAGATTGTTATATGCGTATTTTCTATAAGTTTGT
GGATAATAACCAAGAAAGTTCCAGCAGCGTGAACATGGTGAGCATACCTC
CATTTTGTTCACGGTTGTTGTCATGTTTTTTTGTAGCAAATCATGCATAT
CTGCTTCTATTTTTGACTTGCTCTTTACTCCCCCCCCCCCACTCCTGTCT
CCTATTATCACTGCTGCGGCACGAAATGAACAAACAGTCTTCCGGTGGCT
ACTTCCGAGCACACGCCCGCAACGAGGCCCACTTCAATCGCAAGCTGTGC
GGAGCGCTGAAGGAGTTGGGAGGAGGACACACAGAGATCATCGTGGAGGG
GAAGACCAGCGCCATTCGAAGCTTCCTGCGGTGGTGCAAGAAGGGCCCAG
GTGTGCAAAGTCACGTGCTTGTACTTGTGCGCTGCGCCAAAAAAAATAAA
TTACTCCCCTGCTTTCAATGAAGATAAATGGACCGCGTCTTCCGAGTGAA
CACATATAATGTGAATTCACTGGCAGCATATCGAGAAGAAAAAACGGGAA
GCGATGGATATAGCCTTGAGAGATTTAAGCTCGCTTTTGAAAACGGGTTT
TTCATCAGGGAGGATCGAGTCGTAGTTCATTTCACGTGACACCCCGTACG
GTTGTGAAGTGGGGTTGTAACAGCACTGTCTACCCCCCTTTGTATCGTCT
GCTCAAAAATTGATGGAGAAGAGTCATCCCGCCGAATGACCAGGTTATCT
ATGGAGCCATTGCAGAGGGTGGTGGTAGAAATATCTTCACCCCATCAACT
CAGCTATGTTAATTAGTTTTCGCGTCGATCTATATCTATTTGGAGCCCAT
TTGCTGGCTTCCCCGTGAAAAGCTATTTAATAATGTCGTCCTATTTGACC
CAATCCGGACGCAGGTCTTTATTTGCCATACTGAAGAAAACAGGTTATAT
CAAACCTCGGGACGCAGCCCATCGCAGATCTGTTTTTGGGCACCCAGATC
TATTTTTGGAAGCTCCTTTGGAACGCTGGAAGACCTGCTGATTTTCAATA
CGAATCGCATGATGTAATAGATCCTGATCGATTAGTCTACAAAGTACCGC
GTCCCAAGGGGGTTCAGGTGTACCCCCCACCTCTTTTGCCACATGATACC
TTCCAACTTTTGGGACGGGCTAAAAGCGTTGATTGTTGATGAAAGCTCGT
AGACCTCTCCACGTGCAACTCGGGAGCGAGAGACGATGGAGATCACGAGG
GCAAGACTTCCTCTGTCTGGGTAGCGTCTCTCAGGAGACAGTCACGCTCC
CAAGAGGACATATGTTTTGTAGGATAGTTCTAGAGCAGCCTTTTTGAGCC
TGTAATCCGCCAGCACGTACAGGCTCTACGTGCATGGTCTTCGCAAGCAG
TCTAAAACCTCGTCGTATTGGTACATGTTTGGTTCGCCCGCCACACACAC
ACACACTTGTTTCACTTCTGTTTTCCAGGACTGTCCCAACTCATCGAGGA
TGTCACAGTGGACTGGTCAGAGTACACAGGAATTTTTGACGGCTTTGAGG
TAAGCGGGGTGTGTATATGATGTATGTTTTGTTTTTATGGTTGGGGCCGC
GGCGGTGGGCAGGACGAAAGGAATAGATCGAGCTACGGTTAGTGCGGGGG
GGGGTGGGGTTATCGAGCGCCGCTCCGGTGAGCGGCTTGAAAACAATCTC
AATTAGAAACCTATTCAATGGCACGCGTTCATGCATCCCTAAAGGTGCAC
AAAGCACGATTCAGAATGGCGGTTCCGTTCAAGGAGGAAAATATATATTT
TGCCTTAACTGCTCCACAAAGAAGCTCAAAACTTGAAACGAATCGGTTCG
AATTACCCCCCCCCCCCCCCCCCCCCTGCCGTAGCCCAACTGGAGTCGTA
ATAGGGGGCTGGCTGTACGAGCTCTTGCGGGGTTGTACGAGTCCGTGCGG
TTTTTATTGTGACGTGTGCGTACTTATTGCTGTTTGATATATTTGAAACA
AGAGTGATCTGGGTCTTGACTATTTTTTGAGAATATTACCGAGTGGAAAT
ATATGGCTGGAATCCTGTTTGTTTTCTTTTTTTGTTTCTTGCACACAAGG
CATTTATAACCCAATCGTTTACTTGTGGCTAAGATCACCTGTTAACGCCC
GAAATAAACACGAGGAAAGAAACAAAGGGGGGGTCAGTTTTCATCCGGGA
TATTCTAAAATATTTATCGATCCATATACTTGTATTGATACGAAACCCCC
CTTGAAAAGAGCAACTTTTTTTTTTTTGTAAGGCCTCCTCTCACTGTCAG
ATTTGGCAAAAGTGAACAAATGGCACCTTTGCCAACCTCTGATTTGAGGC
TGAAATCCGGAATCCTCCTTCTTTCTTGTCGGATTACTGCACCATGCGCG
GGGCTTCACGACGGTGACATCCAGGCAACAGCCATCATACATATATGTTC
GCAGACAACCTTCGCGGTTCACCCACAATCGACAGCCGCTATTGACCTTT
ACCTTCTGCGAGGCTGCAAGTATGTCGCCGACATTTCTCGTGGATAACGA
TGATGCTCCCGGCCACATCTCGAGGCATGCTTGCGCGAACGCCGATGACG
TCATGATTAACGTGGAGAACGTGGACCCTAGACCGAAGCGCGCTTCACCT
GCAACAGAAACTAATGTGCTCCTCCTTTGATAGCCCATGGTGCATGAAGT
ATGTATTAGGTCATACTCTGCTATCCCATTTTATTTCGGATTGAAATTAT
TTGAGGCCCTCACATAATTTGCGCTTTGAAGGTGTGCTTTTTTTTGTTTT
GTCCCCTCTAATGTAAAAAATCACCATGCATCTTTATCGATGCAATAAAA
AGTATGTACCTATTTTTCCCGACAACCCCACTTCGTTTTTTTGTTTTCTC
GCTCTTGCTATCTCTTTTTGTTGTTGTTGTTAAGGTGTTTCCGGAGACAG
GGACAGCGACCAACAAGGCAGCGGGACGGCCATGAGGGACTCTTCTGTAG
CTCTGGTTTTTTGTAAAATGTGCATGTTCGGTGGTGTTTTTCCTACGGTG
GGCTGGTTATTGCCAGCGAGCTGGTTCCCCGATATTGTCATCATTTACCA
ACGGATTCTTCTGCAGCAACTCCTGTCATGCGCCACGTATTGTCGAGCCT
GTGTGGCAGTGGGAAGACACTTGAACAAGTACAGATACACACTCGGTGTA
GTTTACTTTTGAGGGATACTCGAAATAAGGCCGAAATATGCCACTTTATT
CTGATTCAGTCGACTGTTGACTGAATACCGTTACATTTTGTGTTTGTAAG
TTACAGGACAGCGGATTTGGTGGTGCAGATATCAAACTCCCTCACTGGTG
CAGGATATATACAGGCGGTAGACCCGCTCACCACGATAGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2987:11642..18232+

>mRNA_H-paniculata_contig2987.8111.1 ID=mRNA_H-paniculata_contig2987.8111.1|Name=mRNA_H-paniculata_contig2987.8111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig2987:11642..18232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGTTGTTGCACCGGCCTTGTGTTTCCTACTTGTAGCAGTGGGGCT
CTCCTGTTCTTGGGGGTTCATGTTGCCTGCGACAGCATCACCGTCCTCGT
GTCGTGCAATGGCCAGGTCTTCCCAGGGGTGCCCACTTTCTCTGACTTCA
TGTATCGGTAGCAGAGATGAGGGTTGTTGCACCGGCCTTGTGTTTCCTAC
TTGTAGCAGTGGGGCTCTCCTGTTCTTGGGGGTTCATGTTGCCTGCGACA
GCATCACCGTCCTCGTGTCGTGCAATGGCCAGGTCTTCCCAGGGGTGCCC
ACTTTCTCTGACTTCATGTATCGGTAGCAGAGATCCTTTCGACAAGAGGC
GAGTGTTCCACCCAAGTTCCGGGTTGCGAATGGGAGATGGCTTAGAGGTG
GACGGCGGGAGCAGCGACGGGACGGCACTAGCCGAAGCCAGGATTGTGGT
TCGTGGACAGATCCTTTCGACAAGAGGCGAGTGTTCCACCCAAGTTCCGG
GTTGCGAATGGGAGATGGCTTAGAGGTGGACGGCGGGAGCAGCGACGGGA
CGGCACTAGCCGAAGCCAGGATTGTGGTTCGTGGACAGTCTTCCGGTGGC
TACTTCCGAGCACACGCCCGCAACGAGGCCCACTTCAATCGCAAGCTGTG
CGGAGCGCTGAAGGAGTTGGGAGGAGGACACACAGAGATCATCGTGGAGG
GGAAGACCAGCGCCATTCGAAGCTTCCTGCGGTGGTGCAAGAAGGGCCCA
GTCTTCCGGTGGCTACTTCCGAGCACACGCCCGCAACGAGGCCCACTTCA
ATCGCAAGCTGTGCGGAGCGCTGAAGGAGTTGGGAGGAGGACACACAGAG
ATCATCGTGGAGGGGAAGACCAGCGCCATTCGAAGCTTCCTGCGGTGGTG
CAAGAAGGGCCCAGGACTGTCCCAACTCATCGAGGATGTCACAGTGGACT
GGTCAGAGTACACAGGAATTTTTGACGGCTTTGAGGACTGTCCCAACTCA
TCGAGGATGTCACAGTGGACTGGTCAGAGTACACAGGAATTTTTGACGGC
TTTGAGGTGTTTCCGGAGACAGGGACAGCGACCAACAAGGCAGCGGGACG
GCCATGAGTGTTTCCGGAGACAGGGACAGCGACCAACAAGGCAGCGGGAC
GGCCATGA
back to top