mRNA_H-paniculata_contig2986.8109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2986.8109.1
Unique NamemRNA_H-paniculata_contig2986.8109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.310e-17
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    7 QGIWTTNPRIVLTLGEDVSGSLRS-PADFEEQA----------PGVTT-----PVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            +GIW+  P ++  LGED+SG ++  P++    A          PG        P   R P GLKNLGATCYLNSQLQALFAN+AFR GV+SW
Sbjct:   36 EGIWSRKPALIAALGEDMSGMVKELPSESTRAATAAAGGSSAGPGDAVVPFPPPRMQRQPTGLKNLGATCYLNSQLQALFANKAFRDGVFSW 127          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A024U320_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U320_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.760e-13
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            ++ GIW TNP ++  LG D S  LRSP   E+          G  P GL+NLGATCY+NS +Q LF   +FR  V+ W
Sbjct:   83 YADGIWKTNPSVLADLGPDPSTMLRSPVSEEDT--NNNHDENGARPCGLRNLGATCYVNSMVQCLFMTMSFRRAVHEW 158          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A485KRV7_9STRA (Aste57867_10741 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRV7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-12
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 SQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            + GIW + P ++  LG D S +LR P+D    A  V  P       GL+NLGATCY+NS +Q LF N +FR  V+ W
Sbjct:  123 TDGIWKSTPSVLADLGPDPSENLRCPSDDNNNAIAVARPC------GLRNLGATCYVNSMVQCLFMNLSFRRAVHEW 193          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A7S2G7G8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G7G8_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 8.060e-12
Identity = 38/70 (54.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    7 QGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFR 216
            +G+W + P +V TLGED S  LR      E   G  T    R PAGLKNLGATCYLNS LQ LF N  FR
Sbjct:   19 RGVWQSEPPLVKTLGEDPSKQLR------EGGGGTGT---ARAPAGLKNLGATCYLNSLLQYLFFNVDFR 79          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A1V9ZY32_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY32_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.530e-11
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            +++GIW + P ++  LGED S S+R+  + E+             P GL+NLGATCY+NS +Q LF + AFR  V+ W
Sbjct:   59 YTEGIWKSVPELLKALGEDPSLSIRTEINQEKST-----------PCGLRNLGATCYVNSMVQVLFMDLAFRRAVHEW 125          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A5J5A1H9_9ASTE (Ubiquitinyl hydrolase 1 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A1H9_9ASTE)

HSP 1 Score: 65.5 bits (158), Expect = 1.230e-10
Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   10 GIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYS 231
            G+W     IVLTLG D S  LR+  D                PAGL NLGATCY NS LQ L+ N++FR GV+S
Sbjct:   80 GLWQKTSEIVLTLGPDPSDDLRASTDS---------------PAGLTNLGATCYANSILQCLYMNKSFREGVFS 138          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A397B363_9STRA (USP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B363_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.610e-10
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGV-TTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            ++ G W + P  ++ +G D S  LR+P D +          VR   P GL+NLGATCY+NS +Q LF N +FR  V+ W
Sbjct:   85 YADGNWKSTPSALVDIGPDPSDMLRTPLDDDTSIHNNGNAAVR---PCGLRNLGATCYVNSMVQCLFMNLSFRRAVHEW 160          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A833QYE8_9POAL (Ubiquitinyl hydrolase 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QYE8_9POAL)

HSP 1 Score: 63.5 bits (153), Expect = 5.880e-10
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   10 GIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYS 231
            G+W  N  ++L+LG D    LRS  D                PAGL NLGATCY NS LQ L+ N +FRAG++S
Sbjct:   80 GLWQKNQDLILSLGPDPCKDLRSSVDT---------------PAGLTNLGATCYANSILQCLYMNTSFRAGIFS 138          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A067C5J2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C5J2_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-9
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            + +GIW T+P ++  LG++ S ++R+       A G +TP       GL+NLGATCY+NS +Q LF + AFR  V+ W
Sbjct:   65 YMEGIWKTHPAVLDALGDNPSLAVRT----RVTADGPSTPC------GLRNLGATCYVNSMVQVLFMDLAFRRAVHEW 132          
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Match: A0A6G0XHG2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHG2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-9
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLKNLGATCYLNSQLQALFANRAFRAGVYSW 234
            ++ GIW +NP  +  LG D S + R     E +       +  R P GL+NLGATCY+NS LQ LF N +FR  V+ W
Sbjct:   76 YTDGIWKSNPSALSELGPDPSENTR-----EIKVENNNQVIVNR-PCGLRNLGATCYVNSMLQCLFMNLSFRRAVHEW 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2986.8109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKX6_ECTSI7.310e-1748.91Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A024U320_9STRA1.760e-1344.87Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KRV7_9STRA1.140e-1244.16Aste57867_10741 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2G7G8_9DINO8.060e-1254.29Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A1V9ZY32_9STRA3.530e-1141.03Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A5J5A1H9_9ASTE1.230e-1047.30Ubiquitinyl hydrolase 1 n=1 Tax=Nyssa sinensis Tax... [more]
A0A397B363_9STRA2.610e-1040.51USP domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A833QYE8_9POAL5.880e-1044.59Ubiquitinyl hydrolase 1 n=1 Tax=Carex littledalei ... [more]
A0A067C5J2_SAPPC1.100e-941.03Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6G0XHG2_9STRA1.100e-942.31Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2986contigH-paniculata_contig2986:463..744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D8LKX6
Preferred nameUSP48
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.69371-CDS-H-paniculata_contig2986:462..5691622929911.69371-CDS-H-paniculata_contig2986:462..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2986 463..569 +
1691481066.0864763-CDS-H-paniculata_contig2986:462..5691691481066.0864763-CDS-H-paniculata_contig2986:462..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2986 463..569 +
1622929911.712212-CDS-H-paniculata_contig2986:617..7441622929911.712212-CDS-H-paniculata_contig2986:617..744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2986 618..744 +
1691481066.0966103-CDS-H-paniculata_contig2986:617..7441691481066.0966103-CDS-H-paniculata_contig2986:617..744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2986 618..744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2986.8109.1prot_H-paniculata_contig2986.8109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2986 463..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2986.8109.1

>prot_H-paniculata_contig2986.8109.1 ID=prot_H-paniculata_contig2986.8109.1|Name=mRNA_H-paniculata_contig2986.8109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
WSQGIWTTNPRIVLTLGEDVSGSLRSPADFEEQAPGVTTPVRGRLPAGLK
NLGATCYLNSQLQALFANRAFRAGVYSW
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mRNA from alignment at H-paniculata_contig2986:463..744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2986.8109.1 ID=mRNA_H-paniculata_contig2986.8109.1|Name=mRNA_H-paniculata_contig2986.8109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig2986:463..744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCGCAGGGTATCTGGACCACAAACCCCCGCATAGTCCTGACCTTGGG AGAAGACGTGTCAGGTTCACTGCGGTCGCCGGCAGATTTCGAGGAGCAGG CGCCTGGGTCCGATGGGAGCGGAAAGCCAACGGCATCGAGGACAGGGGAT GGAAGCGTAACAACCCCTGTCCGAGGACGCCTCCCCGCGGGTCTGAAGAA CCTCGGCGCAACTTGCTACCTGAATTCGCAACTGCAGGCATTATTTGCAA ACCGGGCGTTCAGGGCCGGCGTGTACTCGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2986:463..744+

>mRNA_H-paniculata_contig2986.8109.1 ID=mRNA_H-paniculata_contig2986.8109.1|Name=mRNA_H-paniculata_contig2986.8109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig2986:463..744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCGCAGGGTATCTGGACCACAAACCCCCGCATAGTCCTGACCTTGGG
AGAAGACGTGTCAGGTTCACTGCGGTCGCCGGCAGATTTCGAGGAGCAGG
CGCCTGGTGGTCGCAGGGTATCTGGACCACAAACCCCCGCATAGTCCTGA
CCTTGGGAGAAGACGTGTCAGGTTCACTGCGGTCGCCGGCAGATTTCGAG
GAGCAGGCGCCTGGCGTAACAACCCCTGTCCGAGGACGCCTCCCCGCGGG
TCTGAAGAACCTCGGCGCAACTTGCTACCTGAATTCGCAACTGCAGGCAT
TATTTGCAAACCGGGCGTTCAGGGCCGGCGTGTACTCGTGGCGTAACAAC
CCCTGTCCGAGGACGCCTCCCCGCGGGTCTGAAGAACCTCGGCGCAACTT
GCTACCTGAATTCGCAACTGCAGGCATTATTTGCAAACCGGGCGTTCAGG
GCCGGCGTGTACTCGTGG
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