mRNA_H-paniculata_contig29854.8107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 116 bits (290), Expect = 1.300e-26 Identity = 82/261 (31.42%), Postives = 121/261 (46.36%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET-------------------------RMDVDAAYLNPPVEEELFVKLPP----------------------------EFSPFSRDIPFGETNL--------------LVAVYVDDVVIAGHR-EKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
W+ AM+EE + + G + ED LPAGR I KW+ +K ++G+++ YKARLVAQG+SQ+ G ET +MDV AYLN +EEE++++ P EF I F + ++ V+VDD++I E + E K + F +KDLG +++GIE++RDR NGTI++SQ YI VL R+G R V TP++
Sbjct: 894 WKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLD 1151
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: UPI000E6F7FA5 (uncharacterized protein LOC113359913 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F7FA5) HSP 1 Score: 106 bits (264), Expect = 1.080e-23 Identity = 80/219 (36.53%), Postives = 110/219 (50.23%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKG-EY---------LIETR---------------MDVDAAYLNPPVEEELFVKLPPEFSPFSRDIPFGETNLLVAVYVDDVVIAGHRE-KVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
WR AM+ E AL N W LP G++ I KWI K K + +GS+ KA LVA+G++Q +G +Y L+ R +DV+ A+L EEE+++KLPPEFS G +L V VYVDD++I G+ E + K + + F +KDLG L LGIEV R N I + Q YI ++LK G R P+E
Sbjct: 6 WRLAMKNEVSALEANNTWTRMS---LPHGKQPICCKWIYKIKYRPDGSIERSKACLVAKGYTQAEGIDYHDTFAPVAKLVTVRILLSVADVKGWSLHQLDVNNAFLQGDHEEEIYMKLPPEFSREGEHS--GSVSLFVLVYVDDIIITGNNETSISNLKKFLEKSFSIKDLGKLQYFLGIEVSRS--NRGIFLCQRKYILDILKDAGLTGDRTSDFPME 217
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A438GE57_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GE57_VITVI) HSP 1 Score: 107 bits (267), Expect = 1.450e-23 Identity = 70/217 (32.26%), Postives = 113/217 (52.07%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKG-------------------------EYLIETRMDVDAAYLNPPVEEELFVKLPPEFSPFSRDIPFGETNLLVAVYVDDVVIAGHREKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 576
W AM++E +L+ N WE + LP G+KA+ KW+ + K + +GS YKARLV +GF Q +G E L ++DV A+L+ +EE+L++ P EF I G+ D+ EK++ K + ++F MKDLG+ ++LG+ + RD+PNGT+ +SQ Y+++VL R+ +E + V TP+
Sbjct: 217 WELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSKR-YKARLVVKGFHQKEGIDYTEIFSLVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEEF------IVQGQER-------SDI------EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKPNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPL 410
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A5B6W8P8_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6W8P8_9ROSI) HSP 1 Score: 103 bits (257), Expect = 3.300e-22 Identity = 74/228 (32.46%), Postives = 111/228 (48.68%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET-------------------------RMDVDAAYLNPPVEEELFVKLPPEFSPFSRD----------IPFGETNLLVAVYVDDVVIAGHREK-VDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 576
W A + E A + N W+ LPAGR+A+ KWI K K+ +GS+A YK RLV +G+ Q G +ET ++D++ A+LN + EE+++ PP F D +G L VYV++++I G+ +D+F + +F +KDLG L LGIEV R PNG + +SQ YI E+L+R + PTP+
Sbjct: 580 WTVAAQAEYAASIANNTWDLVP---LPAGRRAVGYKWIFKIKRHADGSIARYKGRLVVKGYLQEAGVDFLETFSPVVKPTTIGVILALVVSLGWSLRQVDINNAFLNGDLREEIYMIQPPGFEQQRSDGKQLVCRLRKALYGSQLLYALVYVNNIIITGNDSLCIDQFVKELDMQFSLKDLGQLHYFLGIEVTRT-PNG-LFLSQKKYILELLQRASMYRSKPSPTPM 802
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A6A3C6G4_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C6G4_HIBSY) HSP 1 Score: 103 bits (256), Expect = 4.550e-22 Identity = 76/219 (34.70%), Postives = 112/219 (51.14%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET-------------------------RMDVDAAYLNPPVEEELFVKLPPEFSPFSRDIPFGETNLLVAVYVDDVVIAGHR-EKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
WR AMEEE ++ KN W+ LP K I KW+ K K G + +KARLVA+G+ Q +G E MDV +A+LN ++EE+ E + + R+ G+ NL+V VYVDD++I G + +D+FK + + F M DLG LS LGIEV ++ + IT++Q +Y R+VL + G +C P+E
Sbjct: 710 WRRAMEEEISSIRKNETWKLVP---LPDSHKPIGLKWVYKLKNDTQGRIVKHKARLVAKGYVQRQGIDFDEVFAPVARLETVRLLISIAAHEGWEVHHMDVKSAFLNGDLKEEVCSL---EHAVYMRNQ--GKGNLIVGVYVDDLIITGECIQDIDKFKSQMKKLFSMSDLGLLSYYLGIEVCQN--SQRITLNQSAYARKVLDKCGMKDCNPSQIPME 918
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A2N9GMX8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GMX8_FAGSY) HSP 1 Score: 102 bits (253), Expect = 5.760e-22 Identity = 78/208 (37.50%), Postives = 111/208 (53.37%), Query Frame = 1
Query: 4 RAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET--RMDVDAAYLNPPVEEELFVKLPPE--------FSPFSRD----IPFGETNL-LVAVYVDDVVIAGHREK-VDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
R AM +E AL K W D LP G+ A+ KW+ K K + +GSV YKARLVA+GF+Q G ET MDV A+LN + EE++++ PP F P S D I T + L+ +YVDD++I G + + + + Q+F MKDLG+LS LG+EV + +SQ Y ++L + G + V TP+E
Sbjct: 62 RQAMADELDALHKTHTW---DMTTLPPGKSAVGCKWVYKIKTRADGSVERYKARLVARGFTQEYGIDYEETFAPMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQGFIPSSYDSALFIRHTSTGITLILLYVDDMIITGDDPAGIRDLQQFLSQQFEMKDLGTLSYFLGLEVTSS--SDGYYLSQAKYASDLLSKAGLTDSNTVSTPLE 264
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A8J5YSS6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YSS6_9ROSI) HSP 1 Score: 102 bits (255), Expect = 5.950e-22 Identity = 77/240 (32.08%), Postives = 114/240 (47.50%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET-------------------------RMDVDAAYLNPPVEEELFVKLPPEFSPFSRDIPFGET----------------------NLLVAVYVDDVVIAGHR-EKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 576
W+ A++ E AL+ N WE LP GRK I KW+ K K+ +G++ KARLV +G SQV G ET ++DV+ A+LN + +E+F++ PP + F P GE +L + VYVDD+VI G +++D F + +F +KD+G+L LGIEV R +GT+ + Q YI E+L R + V TP+
Sbjct: 432 WKIAVQAEYDALIANSTWELCP---LPPGRKVIGCKWLFKVKKNPDGTIERRKARLVTKGCSQVPGCDFKETFSPVVKPTTIQLIFSIAVSRGWCLRQVDVNNAFLNGDLSDEVFMQQPPGYVQFG---PNGEKLVCRLTKALYDASLFVKVSSDFSLYILVYVDDIVITGSSADEIDCFVQQLHNKFALKDMGNLHYFLGIEVSRS-SSGTLHLCQQKYIHELLDRSSMANAKSVHTPM 664
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 102 bits (254), Expect = 8.580e-22 Identity = 76/268 (28.36%), Postives = 123/268 (45.90%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIE-------------------------TRMDVDAAYLNPPVEEELFVKLPPEFSPFSRD----------------------------IPFGETN---------------------LLVAVYVDDVV-IAGHREKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
W+ A + E +L+KN WE P P G+ + ++W+ K K +GSV +KARLVAQG+SQ +G E ++MDV A+L ++E +F+K P + R I G T +++A+YVDD++ + + E + + K + +RF+++D+G +S VLG+ V+R+R T+TI+Q Y+ VLKR+G EC+ V TP+E
Sbjct: 829 WKEATDSEYESLMKNDTWELVPP---PKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLE 1093
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A438JZB6_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JZB6_VITVI) HSP 1 Score: 101 bits (252), Expect = 1.130e-21 Identity = 67/195 (34.36%), Postives = 103/195 (52.82%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIETRMDVDAAYLNPPVEEELFVKLPPEFSPFSRDIPFGETNL-LVAVYVDDVVIAGH-REKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
W+ A+ EE AL KNG WE + LP +K + KW+ K K +G V YKA LV +GF+Q D+D P+EEE+F+ LPP F + + + ++ VYVDD+++ G +V+ K + +F++KDLG + LG+EV R R I+ISQ Y+ ++L G + TP++
Sbjct: 175 WKEAVIEEIRALEKNGTWEVMN---LPREKKPMGCKWVFTVKYKADGIVERYKAHLVVKGFTQTH---------DIDYTKTFAPLEEEVFMMLPPRFCKEEEETRSNDGRMTILIVYVDDIILTGDDTREVERLKKVLATKFKVKDLGQMQYFLGMEVARSRKG--ISISQRKYVLDLLTETGMLGYKLSNTPIK 355
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Match: A0A8H7KIG6_AGABI (Integrase catalytic domain-containing protein n=2 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7KIG6_AGABI) HSP 1 Score: 102 bits (253), Expect = 1.170e-21 Identity = 81/266 (30.45%), Postives = 120/266 (45.11%), Query Frame = 1
Query: 1 WRAAMEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKARLVAQGFSQVKGEYLIET-------------------------RMDVDAAYLNPPV--EEELFVKLPPEFSP-------------------------------------FSR-DIPFG-------ETNLLVAVYVDD-VVIAGHREKVDEFKHNIIQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVE 579
W+ AMEEE L G WE D P G + +KW+ K K+ G+V YKARLVAQGFSQV G +T ++DV AYLN + +E ++++ PP FS +SR D+ G + +++ V+VDD ++A E + E K + + + DLG + +LGIE+RRDR G + +SQ SYI L+RYGF++ + V P++
Sbjct: 894 WKKAMEEELTTLKTAGTWELVD---CPLGINVVGSKWVFKAKKDATGNVVRYKARLVAQGFSQVPGVDYFDTFAPVARLSSIRTALAIATARNLEIHQIDVKGAYLNGRLNNDEVVYMRQPPGFSDPTHPHYVCHLKKTLYGLKQSGRRWYQRLCEILIDNLGYSRCDVDHGVFFRVIQDDLVIILVHVDDCTLVATKLELIRELKERMNEFVEVTDLGEIHWLLGIEIRRDRNEGKLYMSQRSYIDSCLRRYGFEDAKPVSIPMD 1156 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29854.8107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29854.8107.1 >prot_H-paniculata_contig29854.8107.1 ID=prot_H-paniculata_contig29854.8107.1|Name=mRNA_H-paniculata_contig29854.8107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp MEEEGGALVKNGAWESEDPGRLPAGRKAIRTKWIIKRKQKDNGSVACYKAback to top mRNA from alignment at H-paniculata_contig29854:1923..2717+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29854.8107.1 ID=mRNA_H-paniculata_contig29854.8107.1|Name=mRNA_H-paniculata_contig29854.8107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig29854:1923..2717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29854:1923..2717+ >mRNA_H-paniculata_contig29854.8107.1 ID=mRNA_H-paniculata_contig29854.8107.1|Name=mRNA_H-paniculata_contig29854.8107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig29854:1923..2717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |