mRNA_H-paniculata_contig29850.8106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29850.8106.1
Unique NamemRNA_H-paniculata_contig29850.8106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.900e-16
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYSID 198
            ++CKA C+     AFYG+QYGK+C+CG +  +  +HGES  C   C GD  SICGG  AMNVY +D
Sbjct:   28 ETCKAACEG---YAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVYVMD 90
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BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.090e-14
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    7 CKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVY 189
            C+ TC     N F+  QYG+ECWCG A ++   HGEST CT++CAGDA   CGG  A NVY
Sbjct:  356 CEQTCLG---NTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVY 413
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BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.770e-14
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   10 KATCQADPT-NAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYS 192
            K  C+A+ T N F+G+QYG+EC+CG +S+++ +HGES+AC + C GD+  +CGG  AM+VYS
Sbjct:  755 KEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYS 816
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.790e-14
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   10 KATCQADPT-NAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYS 192
            K  C+A+ T N ++G+QYG+EC+CG +S+++ QHGEST+C + C GD+  +CGG  AM+VYS
Sbjct:  866 KERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYS 927
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 8.920e-14
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYS 192
            + C+A C     N ++G+QYG EC+CG  S+++ QHGESTAC + C GD+  +CGG  AM+VYS
Sbjct:  217 EMCEAECSG---NTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYS 277
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-13
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYSID 198
            Q+CKATC      A++G+QYGK+C+CG A  +   +GES  CT+SC GD+ S CGG  AM+++++D
Sbjct:    4 QTCKATCVG---YAYFGLQYGKQCFCGTADEDYTVYGESDDCTYSCTGDSESTCGGRWAMDIFAMD 66
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.730e-13
Identity = 30/64 (46.88%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYS 192
            + C+A C+    N ++G+QYG+EC+CG +S+++ +HGES+AC + C GD+  +CGG  AM+VYS
Sbjct:  329 EMCEAKCRG---NTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYS 389
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FJ36_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ36_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.310e-13
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    7 CKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVY 189
            C+ TC     + ++  QYG+ECWCGPA ++ ++HGEST CT+ C G+    CGG  A +VY
Sbjct:   16 CELTCAG---SYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVY 73
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.920e-13
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    7 CKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYS 192
            C+A C     N ++G+QYG+EC+CG +S+++ +HGES+AC + C GD+  +CGG  AM+VYS
Sbjct:  407 CEAECTG---NTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYS 465
[Close]
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.080e-13
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDASSICGGNTAMNVYSI 195
            +SCKA+C      A+YG+QYG++C+CG A  +   +GES  C  SC GDASS CGG+ AM+VY++
Sbjct:  181 ESCKASCVG---YAYYGLQYGEQCFCGTADEDYTVYGESDNCVLSCTGDASSTCGGSWAMDVYAM 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29850.8106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF45_ECTSI7.900e-1651.52Beta-xylosidase, putative n=1 Tax=Ectocarpus silic... [more]
D7FRS2_ECTSI4.090e-1454.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE6_ECTSI7.770e-1451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS1_ECTSI7.790e-1451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEL0_ECTSI8.920e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI7_ECTSI1.060e-1348.48WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTD7_ECTSI1.730e-1346.88WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ36_ECTSI2.310e-1345.90WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTD8_ECTSI4.920e-1348.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI8_ECTSI5.080e-1350.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29850contigH-paniculata_contig29850:2038..2881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D7FRS2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929911.4981947-CDS-H-paniculata_contig29850:2037..21061622929911.4981947-CDS-H-paniculata_contig29850:2037..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29850 2038..2106 +
1691481066.0142949-CDS-H-paniculata_contig29850:2037..21061691481066.0142949-CDS-H-paniculata_contig29850:2037..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29850 2038..2106 +
1622929911.516049-CDS-H-paniculata_contig29850:2752..28811622929911.516049-CDS-H-paniculata_contig29850:2752..2881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29850 2753..2881 +
1691481066.0273454-CDS-H-paniculata_contig29850:2752..28811691481066.0273454-CDS-H-paniculata_contig29850:2752..2881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29850 2753..2881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29850.8106.1prot_H-paniculata_contig29850.8106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29850 2038..2881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29850.8106.1

>prot_H-paniculata_contig29850.8106.1 ID=prot_H-paniculata_contig29850.8106.1|Name=mRNA_H-paniculata_contig29850.8106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
QSCKATCQADPTNAFYGVQYGKECWCGPASSNVDQHGESTACTFSCAGDA
SSICGGNTAMNVYSID
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mRNA from alignment at H-paniculata_contig29850:2038..2881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29850.8106.1 ID=mRNA_H-paniculata_contig29850.8106.1|Name=mRNA_H-paniculata_contig29850.8106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=844bp|location=Sequence derived from alignment at H-paniculata_contig29850:2038..2881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGCTGCAAGGCCACCTGCCAAGCAGACCCCACGAACGCGTTCTACGG
TGTCCAATATGGAAAGGAGGTGCGTGCGAAGCCAATAATGAAGAATGACA
GTCTATGTAGTGTATATGAGTATACTTATACTGGCTTTTTTCTAGATTTA
ATCGTCCTGGTGAAGCGCCTGATCACTGTATGGAAGCCCAGTCATTTCCC
GTGTTGGATAGTGACGGAACGAGCGATGGCACCTGTGCACCTCAGAACGC
GAGCTTTATGGCCTCACTCGAGGGTGTTGAACTAGAGCCTTCCTCAGCGG
AGACAGACCATTCACGAATCTTGACTCGCAGCCTTACTGCTTGCCTACGG
CGATATATCTATAAATGTTGGTGGCGTCAGAAGCCAGTCTGGCCCTAGGA
ATCGTGGCATTTTCAACGAAATGCATCTATTATAATATTTCTTATGTTTC
GTTTTTGCTCCTACTTGGAAGAAATATGTCTGTTTTTAGAAGAAAAAGTA
TTTTCGAGTATTTTGAGTCACGTGCTCAGAGTATAATAAATAATTCATTG
TGTACAATTTCTCTCTTGGTGTAGTTATTATGTTCATATGTGTAATGCAG
GATTTCGCAACCCGTACTCTCGGCTACTTGGGCATTTCGTTGCGTGTTCG
CCCCTCTCGTCTGCGTCGCCAACTACGATCGTTGTTGACTCTGGGCGATG
ACAACGCACTAACAGTGCTGGTGTGGACCTGCATCAAGTAACGTCGACCA
GCATGGCGAATCGACTGCATGCACCTTCTCATGCGCGGGAGATGCCTCCT
CGATCTGTGGTGGCAATACCGCGATGAACGTCTACAGCATCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29850:2038..2881+

>mRNA_H-paniculata_contig29850.8106.1 ID=mRNA_H-paniculata_contig29850.8106.1|Name=mRNA_H-paniculata_contig29850.8106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig29850:2038..2881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGCTGCAAGGCCACCTGCCAAGCAGACCCCACGAACGCGTTCTACGG
TGTCCAATATGGAAAGGAGCAGAGCTGCAAGGCCACCTGCCAAGCAGACC
CCACGAACGCGTTCTACGGTGTCCAATATGGAAAGGAGTGCTGGTGTGGA
CCTGCATCAAGTAACGTCGACCAGCATGGCGAATCGACTGCATGCACCTT
CTCATGCGCGGGAGATGCCTCCTCGATCTGTGGTGGCAATACCGCGATGA
ACGTCTACAGCATCGATTGCTGGTGTGGACCTGCATCAAGTAACGTCGAC
CAGCATGGCGAATCGACTGCATGCACCTTCTCATGCGCGGGAGATGCCTC
CTCGATCTGTGGTGGCAATACCGCGATGAACGTCTACAGCATCGAT
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