mRNA_H-paniculata_contig2983.8103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: D7FK43_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK43_ECTSI) HSP 1 Score: 271 bits (693), Expect = 4.850e-80 Identity = 136/233 (58.37%), Postives = 169/233 (72.53%), Query Frame = 2
Query: 155 GGYRQTSRRTRRQTDL----------GISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALPRF 823
GGYR+ S RR GI+AT VL+ +N ++Y Q YP++T+AGWKMA AI QGQWYRLLTP+VLHGS HLAVNS+S +SVGPVVE ++GK KF+ VY AGI+GNVLSCI+NPR P+VGASGAIFG+VGA+ AFCLMN +VLG+ NS+RAL V QT+ +N+ G+ S+ IDNMGH+GGF+GG T +IGPR +RR N TG+ Y VD S K PR
Sbjct: 30 GGYRRRSVFGRRPVQRRQAGGSGGQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTLAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRFKRRLNPYTGQPYIVDESFKLGWPRL 262
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: A0A6H5JA75_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA75_9PHAE) HSP 1 Score: 263 bits (672), Expect = 6.160e-75 Identity = 135/234 (57.69%), Postives = 167/234 (71.37%), Query Frame = 2
Query: 155 GGYRQTSRRTRRQTDL---------GISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALPRFRK 829
GGYR+ S RR GI+AT L+ +N ++Y Q YP++T+AGWKMA AI QGQWYRLLTP+VLHGS HLAVNS+S +SVGPVVE ++GK KF+ VY AGI+GNVLSCI+NPR P+VGASGAIFG+VGA+ AFCLMN +VLG+ NS+RAL V QT+ +N+ G+ S+ IDNMGH+GGF+GG T +IGPR R N TG+ Y VD S K PR K
Sbjct: 193 GGYRRRSVFGRRPVQRQAGGSGGQGGITATNALLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTVAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAITFLIGPR---RLNPYTGQPYIVDESFKLGWPRLGK 423
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: A0A835Z1Q0_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q0_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.070e-45 Identity = 102/233 (43.78%), Postives = 140/233 (60.09%), Query Frame = 2
Query: 155 GGYRQTSRRTRRQTDLGISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALP-------RFRKR 832
GGY +RR R S T VL+ I +YG Q L P +T G K+ S I +GQWYRL+TP+ LH ++ HL +NS+SL ++GP VE GK + L++Y +G+SG + SC NPR +VGASGAIFG+VGA A F NR+ LG + R L + +T+ +N +GL + IDN GH GGF+ GFV T + GP +R + +G VDV P+ +L RFR+R
Sbjct: 3 GGY--ATRRRPRSNMPKASVTNVLLAITAAIYGAQWLVPGITMQGAKITSKIM-RGQWYRLVTPIFLHANLAHLLMNSMSLYNIGPFVEQWFGKRRMLSIYVLSGVSGVLASCYWNPRASSVGASGAIFGMVGAAACFFASNRNELG-AGADRGLQSILRTVVINTIMGLQISQIDNAGHAGGFVAGFVLTYLFGPNMRWVGSPYSGPRL-VDV-PRVSLAGMQGDLSRFRRR 229
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: E1Z519_CHLVA (Rhomboid domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z519_CHLVA) HSP 1 Score: 166 bits (419), Expect = 1.610e-42 Identity = 92/210 (43.81%), Postives = 128/210 (60.95%), Query Frame = 2
Query: 203 GISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALPRFRKR 832
G AT VL+V N L++G+Q L +A+ GQW+RLLTP LHG++ HLAVN SLN++GP VE G P+FL +Y +A ++GNV S + P+ ++GASGA+FGI GA A + NR + GK S R L + QTL +N+ GLSST IDN GH+GG +GG ++ ++GPR + + VDV+P LP R +
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVASFLGAPKSVSLGASGAVFGIGGALAMYFYRNRDIYGKT-SDRVLRQLWQTLVLNVVYGLSSTRIDNWGHMGGLVGGALAGLLLGPRFQATTLPGKRGKWLVDVAP---LPWLRSQ 240
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: A0A7S2ENP6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENP6_9STRA) HSP 1 Score: 167 bits (422), Expect = 8.510e-41 Identity = 87/180 (48.33%), Postives = 119/180 (66.11%), Query Frame = 2
Query: 209 SATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRL 748
S T+ L+ NV +YG+Q ++PS+TR G K + I ++ + YRL++PV LHG V HLA+NS SLN++GP VE G+ +FL Y AAG++GN+LS ++P P+VGASGAIFG+VGA+A F N+S+ GK R L + QT NL G S IDN GH+GG +GG GP+L
Sbjct: 197 SLTQRLVWTNVAIYGLQVVFPSITRWGAKRSDLILSRRELYRLISPVFLHGGVVHLAMNSFSLNNIGPEVERCFGQGRFLGTYLAAGVAGNLLSAYMSPN-PSVGASGAIFGLVGAYAVFLGRNKSLFGKSGER-GLASLRQTFVTNLIYGFMSPQIDNWGHIGGALGGATIAYHFGPKL 374
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: A0A7S1H9N4_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H9N4_HEMAN) HSP 1 Score: 154 bits (389), Expect = 2.710e-39 Identity = 89/185 (48.11%), Postives = 125/185 (67.57%), Query Frame = 2
Query: 176 RRTRRQTDLGISATKVLIVINVLMYGVQTLYP-SVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLS-STHIDNMGHVGGFIGGFVS 724
RR R G TK L+ +NV ++ QTL ++T AG ++S IA GQ+YRL TP+ LHGS HL VN SLN+VGP VE++ G + VY A+G++GNVLSC+++ M +VGASGAIFG+VGA F ++ +LG S+ AL+ +GQT+ +N+ALGL ++IDN GH+GG +GG V+
Sbjct: 4 RRRSRSAVSGTIVTKALLAVNVAVFFAQTLSQGALTLAGAMVSSDIA-AGQYYRLFTPMFLHGSFNHLLVNCFSLNAVGPQVEALYGLDRMSVVYLASGVAGNVLSCMMSSHM-SVGASGAIFGLVGALGVFLARHQEMLG-GGSKVALSSIGQTIFLNMALGLRPGSNIDNWGHLGGLVGGVVT 185
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: R7Q8K5_CHOCR (Rhomboid domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8K5_CHOCR) HSP 1 Score: 159 bits (402), Expect = 7.030e-39 Identity = 92/199 (46.23%), Postives = 130/199 (65.33%), Query Frame = 2
Query: 206 ISATKVLIVINVLMYGVQTLY-PSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLS-STHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDV 796
I + VL+ +NV ++ +QTL P+V G K+ SAI GQ+YRL +P+ LH SV HL VNS SL+S GP VES GKP+FL++Y A+G+SGNVLS +P PAVGASGAIFG+VGA +R +LG +R+ L + + MN +GL+ + +DN GH+GGF+GG + ++GPRL ++ + TG D+
Sbjct: 150 IRISHVLLALNVGVFALQTLMGPNVLMRGAKVNSAIT-AGQYYRLFSPMFLHASVSHLLVNSFSLHSTGPSVESWFGKPRFLSLYIASGVSGNVLSYFCSPT-PAVGASGAIFGLVGASLVVLGRHRQILGPR-ARKGLRSLAYVVIMNFGIGLTPGSRVDNFGHLGGFLGGIAFSYLLGPRLTVQKTN-TGRKVLRDI 344
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: L1I841_GUITC (Rhomboid domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I841_GUITC) HSP 1 Score: 155 bits (392), Expect = 1.040e-37 Identity = 89/210 (42.38%), Postives = 134/210 (63.81%), Query Frame = 2
Query: 209 SATKVLIVINVLMYGVQTLYP-SVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRM-PAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLS-STHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALPRFRK 829
+ T +++NV+++ +Q L ++ AG K+ S I + Q+YRLLTP+ LHGS+ H+ VN SLN++GP VE G + + Y AGI+GNV S P++ P+VGASGAIFG+VGA F ++ + G + SR L G+ QT +NL +GL+ ++IDN GH+GG IGG V +IGP L+ +R S+TG++ + P +LP R+
Sbjct: 143 AVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQDIFG-DRSRYMLNGIIQTCILNLIIGLAPGSNIDNWGHIGGAIGGAVVAYLIGPNLKVKR-SLTGQVLVDE--PLVSLPGSRQ 348
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: G7IR52_MEDTR (Putative rhomboid protease n=4 Tax=Trifolieae TaxID=163742 RepID=G7IR52_MEDTR) HSP 1 Score: 153 bits (386), Expect = 3.480e-37 Identity = 89/236 (37.71%), Postives = 136/236 (57.63%), Query Frame = 2
Query: 134 GSPYGGSGGYRQTSRRTRRQTDLGISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRLRRRRNSITGELYTVDVSPKFALPRFRKRAEP 841
G P SG S+ +R+ G T +L+ NVL Y Q + +++ ++GQ +RL+T LH ++ HL +N SLNSVGP VES G ++LA+Y A+ I+ +S +MPAVGASGAIFG+VG+ A F L ++ ++G ++ L + Q +A+NLA+GLSST IDN GH+GG IGG ++ +IGP + S+ G +D +P + L + + +P
Sbjct: 95 GRPEASSGN--SDSKMSRKNPFNGRKWTNILLAANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAAMSYRFC-KMPAVGASGAIFGLVGSVAVFVLRHKDLVG--GGKKDLQHIAQVIALNLAIGLSSTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRRLFIDSAPMYNLFKITRVPKP 325
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Match: A0A7S3PU80_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU80_9STRA) HSP 1 Score: 154 bits (389), Expect = 4.580e-37 Identity = 88/198 (44.44%), Postives = 113/198 (57.07%), Query Frame = 2
Query: 155 GGYRQTSRRTRRQTDLGISATKVLIVINVLMYGVQTLYPSVTRAGWKMASAIANQGQWYRLLTPVVLHGSVPHLAVNSLSLNSVGPVVESMLGKPKFLAVYAAAGISGNVLSCIINPRMPAVGASGAIFGIVGAFAAFCLMNRSVLGKENSRRALTGVGQTLAMNLALGLSSTHIDNMGHVGGFIGGFVSTCIIGPRL 748
GGYR + S T LIV NV+MYG+Q + P +TR G K + I Q YRL TPV LHGS+ HL +NS SL ++GP VE G +FLA Y AAGI+GN+ S P P++GASGA+FGI+GA+ AF N G+ + + V TL MN+ GL S IDN H+GG + G GP+L
Sbjct: 96 GGYRPWGVSAASRRPGKYSWTSRLIVTNVIMYGLQMMMPGITRMGAKRSDMIMQGQQLYRLFTPVFLHGSILHLMMNSFSLQNIGPEVERNFGSGRFLATYVAAGIAGNMASAYYTPN-PSLGASGAVFGIMGAYYAFLSNNSQFFGRSGEQM-MGRVSSTLMMNVIFGLVSPSIDNWAHIGGAVAGVGMAMTFGPKL 291 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2983.8103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2983.8103.1 >prot_H-paniculata_contig2983.8103.1 ID=prot_H-paniculata_contig2983.8103.1|Name=mRNA_H-paniculata_contig2983.8103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=257bp MMSRDRRYRTRQYGSPYGGSGGYRQTSRRTRRQTDLGISATKVLIVINVLback to top mRNA from alignment at H-paniculata_contig2983:5728..17651+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2983.8103.1 ID=mRNA_H-paniculata_contig2983.8103.1|Name=mRNA_H-paniculata_contig2983.8103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11924bp|location=Sequence derived from alignment at H-paniculata_contig2983:5728..17651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2983:5728..17651+ >mRNA_H-paniculata_contig2983.8103.1 ID=mRNA_H-paniculata_contig2983.8103.1|Name=mRNA_H-paniculata_contig2983.8103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at H-paniculata_contig2983:5728..17651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |