mRNA_H-paniculata_contig2983.8102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2983.8102.1
Unique NamemRNA_H-paniculata_contig2983.8102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2983.8102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2983contigH-paniculata_contig2983:3451..5717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size354
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.8775566-CDS-H-paniculata_contig2983:3450..36131622929910.8775566-CDS-H-paniculata_contig2983:3450..3613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2983 3451..3613 +
1691481065.7304337-CDS-H-paniculata_contig2983:3450..36131691481065.7304337-CDS-H-paniculata_contig2983:3450..3613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2983 3451..3613 +
1622929910.8915439-CDS-H-paniculata_contig2983:5528..57161622929910.8915439-CDS-H-paniculata_contig2983:5528..5716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2983 5529..5716 +
1691481065.741798-CDS-H-paniculata_contig2983:5528..57161691481065.741798-CDS-H-paniculata_contig2983:5528..5716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2983 5529..5716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2983.8102.1prot_H-paniculata_contig2983.8102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2983 3451..5716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2983.8102.1

>prot_H-paniculata_contig2983.8102.1 ID=prot_H-paniculata_contig2983.8102.1|Name=mRNA_H-paniculata_contig2983.8102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
LPCCPFERVEVNIPQGMKRTMRTTTTKSYLMKDPLRLLVLSFSLGLLTAC
CTVGAFSNPPTFHQCARFAATKPTSSAPCLRARDGRGGSSGGAPQTFSGG
SGPPRGNGGLGGWDWGG
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mRNA from alignment at H-paniculata_contig2983:3451..5717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2983.8102.1 ID=mRNA_H-paniculata_contig2983.8102.1|Name=mRNA_H-paniculata_contig2983.8102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2267bp|location=Sequence derived from alignment at H-paniculata_contig2983:3451..5717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTTGTTGCCCTTTCGAACGGGTAGAGGTTAACATCCCGCAAGGAAT
GAAGCGCACTATGAGAACTACCACGACGAAAAGTTATCTGATGAAGGATC
CTCTGCGCTTGTTGGTGCTGTCGTTCAGCCTTGGACTACTGACAGCCTGC
TGCACCGTCGGAGGTAGTGCCCTTGTTTCCTGTTCGGCTTGTTTCAGTTT
TCAGTCATTTGACTCCTTTTTCGTTGCCTCTGAGAGTATGTTGGAAAACT
CCGCGATGGATACGAGAGAAGTTGTAAATAGATGGAAGATGTACTGTTTG
CACACAACTTACTGGACGACCGGCAACTTGTCGTGTTATGCAAAAAGCGG
GAGCAAGCAGAGGGGGCGGTTTGTTCTGTTGCGTTTTTCATATTGTTAAT
TGTAAAACGAAAGAGGTGCCGGGTTCTTGATGGAAACATGGAAACGTATG
TCATCGTCAGGTATTCACGGATGCTGGGTCCAAAAAGCTGCCAATCGACA
CATGTAAATAAATACCTATGGATTGTTATTTGTGGTATGTCTACTTGTCT
CTACGCGAGTTGCTGCACAAAGCACCTGCTTTCAAGGGGCGGGAGAAGGG
TGGACACGGTGATGCCAAGAAGCTCTTGGACTTTGAGCGATGATCTTCGG
AGTTTTGAAACGGTTCAAAATAGAACCTAACGACCATACTTGCACCGCCC
TGCCGTAGGTCGCTAGAGATGTGCTCGGTCGTCGAAACAGTGATCGGAAC
GAATTTCTCCATTTTAGGAAATCTATTGGAGCGGATTTCAGATCAATCCC
CAGATCTACAAAATCCGCGGCGCTCCCGCATTTGCGGATCGGGGGTCAAA
ATATCAACATCATCCGGCGGTTTTGCAACACAGGTGAAACCAACGTGAGC
TCTGATAGAATCCTACTCTTGACCATAACCATGTCGCGAAGCTATAATAG
GTACATTTTGCTACCTTGACTAGAGGCATAGCGAGACAGAGCTAATGCAT
GTGAGTGCAGTCGATTGCATGTGCTACACCACATCAGGATGACAACGCTA
TGTGCAGTACCGTACCGTACAACACAGGGACTGACAGACACCGCAGATAC
AGAGGGTATTATTTTACGTGAAAAAGTTAAGCACTGATAGGTTGTTTTCC
AGATTGTTTTCCGCCAGAACTCTCAAAAATTGCATGAGCACCCTCCCACT
CATGGTTTCATACCACTGTAGCCAGTTATCTGTGGGACTGCTTTCTCCAC
ACAGTAACACACAATCCTGACTTCACTCGGTCTGTCCGCAATCCTCGCTA
CCATAGCCCACACAAAGATTAACATTGTCCCTACGAGGTATCTACCGCTG
ACGCGGCAACACCAAAATTCAGCCGTCAAAATGATATGTGTTATTTATTG
GTTTTCATTTTGCGGATCTCTTTACATGATGACCATTTCCGCCACGGCAC
CCCGCTCTCTCGTAAGCCCATAACATAGCTCGTCTACCTGACATTTCGTT
ACAATTTGCTTTATTATTGCAATTTTTTCTGCATTCACACCCAATAAATT
ATTGTTATCAGTAGTATAGCCAGGGCTGCGCCCCGTTCAGCTCCGAATTT
TTCCATTGATGCCAAGTTATCCAGAACCTCCATGACCTATGCACAACGGC
TCGCTGTGCTTTCATATGGACAAAAGGGCCATGAACATTCGCTTGCAGAA
TTTGGTCGAGTACAAACTTGAAAAACATATTCCGAAATTACCACCAAACC
ACTACCGGGGACATTAGGGTATTACGTGAGGGAGATGATACGCTTGCCCG
TTCTGATTTTGCTGATAAAACACTCATAATCAACAATGTTTACGTATGAC
CTGCATAGAGTCTAAATGAGTTCAAAAATCAATGCGTTTTAGTCATGAAA
ACGTGTTAAACCAGGTTAACCGGTCCCCCTTCCCGCTTTGGGTTTGAACA
TTGCTGGTGAATGTCTAGCCATAGGTATGGGCTATAATAACTCAAGTATA
ACCCCCGCGCGCGCCCGCCCCCGCCCCCCCGCTCCTACTCTTCCCCCAAC
CTTTGATCCCCGACAACATCATGATCAGCGTTTTCCAACCCACCCACCTT
CCATCAATGCGCCCGCTTCGCCGCAACGAAGCCAACTTCTTCCGCGCCAT
GTCTACGTGCCCGGGATGGCCGCGGTGGCAGCAGCGGCGGCGCACCCCAA
ACGTTCTCGGGGGGATCGGGACCTCCGAGGGGCAACGGAGGCCTAGGGGG
TTGGGACTGGGGAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2983:3451..5717+

>mRNA_H-paniculata_contig2983.8102.1 ID=mRNA_H-paniculata_contig2983.8102.1|Name=mRNA_H-paniculata_contig2983.8102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig2983:3451..5717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTTGTTGCCCTTTCGAACGGGTAGAGGTTAACATCCCGCAAGGAAT
GAAGCGCACTATGAGAACTACCACGACGAAAAGTTATCTGATGAAGGATC
CTCTGCGCTTGTTGGTGCTGTCGTTCAGCCTTGGACTACTGACAGCCTGC
TGCACCGTCGGAGTTGCCTTGTTGCCCTTTCGAACGGGTAGAGGTTAACA
TCCCGCAAGGAATGAAGCGCACTATGAGAACTACCACGACGAAAAGTTAT
CTGATGAAGGATCCTCTGCGCTTGTTGGTGCTGTCGTTCAGCCTTGGACT
ACTGACAGCCTGCTGCACCGTCGGAGCGTTTTCCAACCCACCCACCTTCC
ATCAATGCGCCCGCTTCGCCGCAACGAAGCCAACTTCTTCCGCGCCATGT
CTACGTGCCCGGGATGGCCGCGGTGGCAGCAGCGGCGGCGCACCCCAAAC
GTTCTCGGGGGGATCGGGACCTCCGAGGGGCAACGGAGGCCTAGGGGGTT
GGGACTGGGGAGGCCGTTTTCCAACCCACCCACCTTCCATCAATGCGCCC
GCTTCGCCGCAACGAAGCCAACTTCTTCCGCGCCATGTCTACGTGCCCGG
GATGGCCGCGGTGGCAGCAGCGGCGGCGCACCCCAAACGTTCTCGGGGGG
ATCGGGACCTCCGAGGGGCAACGGAGGCCTAGGGGGTTGGGACTGGGGAG
GC
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