mRNA_H-paniculata_contig29812.8100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29812.8100.1
Unique NamemRNA_H-paniculata_contig29812.8100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29812.8100.1 vs. uniprot
Match: A0A6H5K5F4_9PHAE (AAA_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.780e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   13 DGVPVPPLLVTGPSATGKTSIVRAVLDYRGFSYVHVNCVEVMAKQGLLEAIVEQTAG 183
            DGVPVPPLLVTGP  TGKTS+VRAVLD+RG SY +VNC EV+ ++ LLEA+VEQ AG
Sbjct:   86 DGVPVPPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEALVEQVAG 142
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BLAST of mRNA_H-paniculata_contig29812.8100.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.550e-18
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   13 DGVPVPPLLVTGPSATGKTSIVRAVLDYRGFSYVHVNCVEVMAKQGLLEAIVEQTAG 183
            DGVPVPPLLVTGP  TGKTS+VRAVLD+RG SY +VNC EV+ ++ LLE +VEQ AG
Sbjct:  130 DGVPVPPLLVTGPPCTGKTSVVRAVLDHRGCSYAYVNCAEVVQRRDLLEVLVEQVAG 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29812.8100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5F4_9PHAE1.780e-1973.68AAA_16 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZ80_ECTSI3.550e-1871.93Putative Mn/Fe superoxide dismutase n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29812contigH-paniculata_contig29812:2064..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.575421-CDS-H-paniculata_contig29812:2063..22911622929910.575421-CDS-H-paniculata_contig29812:2063..2291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29812 2064..2291 +
1691481065.6340928-CDS-H-paniculata_contig29812:2063..22911691481065.6340928-CDS-H-paniculata_contig29812:2063..2291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29812 2064..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29812.8100.1prot_H-paniculata_contig29812.8100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29812 2064..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29812.8100.1

>prot_H-paniculata_contig29812.8100.1 ID=prot_H-paniculata_contig29812.8100.1|Name=mRNA_H-paniculata_contig29812.8100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MQVADGVPVPPLLVTGPSATGKTSIVRAVLDYRGFSYVHVNCVEVMAKQG
LLEAIVEQTAGSRLVLLRRNIIIRSI
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mRNA from alignment at H-paniculata_contig29812:2064..2291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29812.8100.1 ID=mRNA_H-paniculata_contig29812.8100.1|Name=mRNA_H-paniculata_contig29812.8100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig29812:2064..2291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTTGCGGACGGAGTGCCTGTACCGCCGTTGCTGGTGACGGGGCC
CTCTGCGACGGGGAAAACTAGCATAGTGCGTGCTGTTCTGGACTATCGCG
GCTTCTCGTATGTGCATGTGAATTGCGTCGAGGTTATGGCCAAACAGGGC
CTGCTGGAGGCCATCGTGGAACAAACTGCCGGTTCGAGGTTAGTACTATT
ACGGAGGAACATAATAATCAGGAGCATT
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Coding sequence (CDS) from alignment at H-paniculata_contig29812:2064..2291+

>mRNA_H-paniculata_contig29812.8100.1 ID=mRNA_H-paniculata_contig29812.8100.1|Name=mRNA_H-paniculata_contig29812.8100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig29812:2064..2291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTTGCGGACGGAGTGCCTGTACCGCCGTTGCTGGTGACGGGGCC
CTCTGCGACGGGGAAAACTAGCATAGTGCGTGCTGTTCTGGACTATCGCG
GCTTCTCGTATGTGCATGTGAATTGCGTCGAGGTTATGGCCAAACAGGGC
CTGCTGGAGGCCATCGTGGAACAAACTGCCGGTTCGAGGTTAGTACTATT
ACGGAGGAACATAATAATCAGGAGCATTATGCAGGTTGCGGACGGAGTGC
CTGTACCGCCGTTGCTGGTGACGGGGCCCTCTGCGACGGGGAAAACTAGC
ATAGTGCGTGCTGTTCTGGACTATCGCGGCTTCTCGTATGTGCATGTGAA
TTGCGTCGAGGTTATGGCCAAACAGGGCCTGCTGGAGGCCATCGTGGAAC
AAACTGCCGGTTCGAGGTTAGTACTATTACGGAGGAACATAATAATCAGG
AGCATT
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