mRNA_H-paniculata_contig29810.8098.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29810.8098.1
Unique NamemRNA_H-paniculata_contig29810.8098.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29810.8098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29810contigH-paniculata_contig29810:81..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.4832678-CDS-H-paniculata_contig29810:80..5631622929910.4832678-CDS-H-paniculata_contig29810:80..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29810 81..563 +
1691481065.6179059-CDS-H-paniculata_contig29810:80..5631691481065.6179059-CDS-H-paniculata_contig29810:80..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29810 81..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29810.8098.1prot_H-paniculata_contig29810.8098.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29810 81..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29810.8098.1

>prot_H-paniculata_contig29810.8098.1 ID=prot_H-paniculata_contig29810.8098.1|Name=mRNA_H-paniculata_contig29810.8098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
QKDPTTGPKPSFPAEVFRMHCKWEKRRPSLPAADRAFFDFTNAISASGLS
SSSGLQVTSPPAASESRLAVMTAAFAAASAGASSWPNFALTSPKVSSSAG
ATSSDNNALAAFEFPSLCLHAAAAFLYLSAVDVLPAVDRRRVAAASVYAM
NHGSTTLMSLL
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mRNA from alignment at H-paniculata_contig29810:81..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29810.8098.1 ID=mRNA_H-paniculata_contig29810.8098.1|Name=mRNA_H-paniculata_contig29810.8098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=484bp|location=Sequence derived from alignment at H-paniculata_contig29810:81..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAGACCCGACAACGGGGCCAAAACCTTCCTTCCCCGCCGAGGTGTT
CAGGATGCATTGCAAATGGGAGAAACGTAGGCCATCGTTACCGGCCGCGG
ACAGGGCGTTCTTCGACTTCACAAATGCTATCAGCGCTTCGGGGCTATCT
TCGTCGTCTGGCCTCCAGGTGACTTCTCCGCCCGCAGCGAGCGAATCCCG
GCTTGCCGTTATGACCGCTGCTTTTGCCGCTGCCAGCGCGGGCGCATCCT
CCTGGCCGAATTTCGCGCTGACTTCGCCGAAGGTATCCTCGTCGGCAGGC
GCGACTTCGTCCGACAACAACGCTCTCGCCGCGTTTGAGTTCCCCTCTTT
GTGCCTGCACGCAGCTGCCGCCTTCCTGTATCTGTCCGCCGTAGACGTGC
TCCCCGCTGTCGACCGGCGGCGGGTCGCTGCGGCCTCCGTGTATGCCATG
AACCACGGGAGCACGACGCTGATGTCCCTTCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig29810:81..564+

>mRNA_H-paniculata_contig29810.8098.1 ID=mRNA_H-paniculata_contig29810.8098.1|Name=mRNA_H-paniculata_contig29810.8098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig29810:81..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAGACCCGACAACGGGGCCAAAACCTTCCTTCCCCGCCGAGGTGTT
CAGGATGCATTGCAAATGGGAGAAACGTAGGCCATCGTTACCGGCCGCGG
ACAGGGCGTTCTTCGACTTCACAAATGCTATCAGCGCTTCGGGGCTATCT
TCGTCGTCTGGCCTCCAGGTGACTTCTCCGCCCGCAGCGAGCGAATCCCG
GCTTGCCGTTATGACCGCTGCTTTTGCCGCTGCCAGCGCGGGCGCATCCT
CCTGGCCGAATTTCGCGCTGACTTCGCCGAAGGTATCCTCGTCGGCAGGC
GCGACTTCGTCCGACAACAACGCTCTCGCCGCGTTTGAGTTCCCCTCTTT
GTGCCTGCACGCAGCTGCCGCCTTCCTGTATCTGTCCGCCGTAGACGTGC
TCCCCGCTGTCGACCGGCGGCGGGTCGCTGCGGCCTCCGTGTATGCCATG
AACCACGGGAGCACGACGCTGATGTCCCTTCTCCAGAAAGACCCGACAAC
GGGGCCAAAACCTTCCTTCCCCGCCGAGGTGTTCAGGATGCATTGCAAAT
GGGAGAAACGTAGGCCATCGTTACCGGCCGCGGACAGGGCGTTCTTCGAC
TTCACAAATGCTATCAGCGCTTCGGGGCTATCTTCGTCGTCTGGCCTCCA
GGTGACTTCTCCGCCCGCAGCGAGCGAATCCCGGCTTGCCGTTATGACCG
CTGCTTTTGCCGCTGCCAGCGCGGGCGCATCCTCCTGGCCGAATTTCGCG
CTGACTTCGCCGAAGGTATCCTCGTCGGCAGGCGCGACTTCGTCCGACAA
CAACGCTCTCGCCGCGTTTGAGTTCCCCTCTTTGTGCCTGCACGCAGCTG
CCGCCTTCCTGTATCTGTCCGCCGTAGACGTGCTCCCCGCTGTCGACCGG
CGGCGGGTCGCTGCGGCCTCCGTGTATGCCATGAACCACGGGAGCACGAC
GCTGATGTCCCTTCTC
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