prot_H-paniculata_contig2981.8097.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2981.8097.1
Unique Nameprot_H-paniculata_contig2981.8097.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length64
Homology
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BLAST of mRNA_H-paniculata_contig2981.8097.1 vs. uniprot
Match: A0A6H5L382_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L382_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-6
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 0 
Query:    3 SCSSGTYAWGMFFLVLNLLCLAVPPTILCVRCWRRITQPPPL----SSLVAAGEGEGGDVK 59
            +CSSGT+AWG+ FLVL+LL L  PP   C RC+ R T+  P     S LV   E    D K
Sbjct:  289 TCSSGTFAWGVMFLVLDLLLLVAPPVWWCARCYDRATRSVPAVAATSVLVVPDERPATDAK 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2981.8097.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L382_9PHAE2.770e-647.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..24
score: 0.571
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2981contigH-paniculata_contig2981:11108..11299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2981.8097.1mRNA_H-paniculata_contig2981.8097.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2981 11108..11300 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2981.8097.1 ID=prot_H-paniculata_contig2981.8097.1|Name=mRNA_H-paniculata_contig2981.8097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
SLSCSSGTYAWGMFFLVLNLLCLAVPPTILCVRCWRRITQPPPLSSLVAA
GEGEGGDVKLEVAA
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