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Homology
BLAST of mRNA_H-paniculata_contig2980.8096.1 vs. uniprot
Match: D7FKR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR8_ECTSI) HSP 1 Score: 295 bits (755), Expect = 9.440e-96 Identity = 153/246 (62.20%), Postives = 181/246 (73.58%), Query Frame = 1
Query: 1 ETEKELNVMARLPAWAKGKSVRLELGKTHIKLFLKEEEDKPIIEGDLRGIVRLDGSYWTMESLDDGGKMLYLTLEKIPELTGLGPWMGVVQEEEQVTSDYPEEKKVLYASIVLAVESDKKRP---TSVPRHTGEVDEDGFCQDLMAVQGMSAAMIARQAGVPRNGNALFSAVSASVDYHTTGEHLSVEPKAIELKAKELRKRAIDYLADAYKQGKQIFLEGNAISARELVGAQAKARNMVDGDEYL 729
ET+KE+NV ARLPAWAKGKSV L++ TH+KLFLKEEE PIIEGDLRG + +DGSYWTME+LDD GKMLYLTLEK P+LTGLGPWMGVVQ E+QV SDYPEE K A I +KK + P+HTG VDEDGFC+DL+AVQ MS AM+ARQ VP NGNALFSAV+ S + +GEH IE AK+LR++ +DYL AYK+ I++ G + AR V AQAKA +M DGDEYL
Sbjct: 72 ETDKEVNVKARLPAWAKGKSVVLDMTNTHVKLFLKEEESTPIIEGDLRGAILMDGSYWTMETLDDNGKMLYLTLEKAPQLTGLGPWMGVVQGEKQVNSDYPEEDKA--AEIAAMAHEEKKAQDAESGTPKHTGVVDEDGFCRDLLAVQAMSGAMVARQ--VPVNGNALFSAVAISKWFIESGEHPDASSPEIETIAKDLRQKTLDYLTKAYKENAPIYMSGEYMDARPFVAAQAKANSMADGDEYL 313
BLAST of mRNA_H-paniculata_contig2980.8096.1 vs. uniprot
Match: A0A835YH47_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH47_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 2.610e-5 Identity = 28/98 (28.57%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 1 ETEKELNVMARLPAWAKGKSVRLELGKTHIKLFLKEEEDKPIIEGDLRGIVRLDGSYWTMESLDDGGKMLYLTLEKIPELTGLGPWMGVVQEEEQVTS 294
E + +L V L + + +++ ++ +K+ + E P+++G+ +G V S+WT E + G + LYL LEK + G WMGV++ E+ +T+
Sbjct: 60 EKDDDLEVRINLGQGVTARDLEVDIRRSSVKVSVLEA---PLLQGEWQGKVSASSSFWTTEEMAGGDRQLYLHLEKADDDDHGGLWMGVLRNEDPLTT 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 285.0 |
| Seed ortholog evalue | 3.1e-74 |
| Seed eggNOG ortholog | 2880.D7FKR8 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | OTU-like cysteine protease |
| EggNOG OGs | 2BVCW@1,2S253@2759 |
| Ec32 ortholog description | HSP20-like chaperone |
| Ec32 ortholog | Ec-21_001870.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 732 |
| Cds size | 708 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2980.8096.1 >prot_H-paniculata_contig2980.8096.1 ID=prot_H-paniculata_contig2980.8096.1|Name=mRNA_H-paniculata_contig2980.8096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MARLPAWAKGKSVRLELGKTHIKLFLKEEEDKPIIEGDLRGIVRLDGSYW
TMESLDDGGKMLYLTLEKIPELTGLGPWMGVVQEEEQVTSDYPEEKKVLY
ASIVLAVESDKKRPTSVPRHTGEVDEDGFCQDLMAVQGMSAAMIARQAGV
PRNGNALFSAVSASVDYHTTGEHLSVEPKAIELKAKELRKRAIDYLADAY
KQGKQIFLEGNAISARELVGAQAKARNMVDGDEYLR back to topmRNA from alignment at H-paniculata_contig2980:15549..19280+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2980.8096.1 ID=mRNA_H-paniculata_contig2980.8096.1|Name=mRNA_H-paniculata_contig2980.8096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3732bp|location=Sequence derived from alignment at H-paniculata_contig2980:15549..19280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGGAGAAAGAGTTGAACGTAATGGCGCGCTTGCCTGCGTGGGCAAA
GGGCAAGTCAGTACGTCTGGAACTGGGGAAGACTCACATCAAATTATTTC
TCAAGGAAGAGGAGGACAAACCCATTATAGAGGTGGGTGCAAAGAGGCAA
AAACGTTTGCTCACAAATCGTTGGAGTACAATACAGTCAGCGATCGGTAC
TGTACAGTACAGTGCTGTTTTAATTGCCCTTACTCCAAGCCCGTCTCATC
GGGGCAAGCGACCCGATGTTCAGTTGTCCAGCAAGTTATTTCACTGGTAT
AGAATGTCGCCGTTAAAAATCATAAATGAGACAACAACTGTATTCGACAG
CTTGTTTTTCTAGTAGATATTCTGACAGTCTTACCATTTTTAGGCCTGGA
CGATCACCCTACGCTTGGTAAAAAAATTCAAGGGCGATGCGTTTCCGCCC
TATATACAGTACGTTTGACTATTGTAGACTCTGATGAAGCCTCCACCACG
TGATGGGATATTTACTCTCCTAAAAATTAGCATCGTAGCAACATGCGCTT
GTCTATTTTACCCCCACTTGACCCCGTTTGTGTTGATGTTATCTTGATTG
TTTTGTCACCTGCTATCGCTTGTAGGGTGATCTACGTGGAATCGTCCGTC
TAGATGGGAGCTACTGGACCATGGGTAAGAATAGAACTTACACTATTTAC
TGTTTTCTGTTTATTATGAGAGGTGGGGATGATTTTCAATGTTGACCGAA
ATATGTGAGTGATACAACCGTTCATGGTCGCTGTGATCTTCGCAAAACAC
GGCGTTGAGATGTGCCTAGGTGGAGATATCTATGCTGAAGTTGGTGAGGA
ATTGCGGCGTTAATTTTTCTAAAAACTTGGTTCTCTGTGCAGCAGAAGTT
ACCACCGCGAGGCCTTTCATCTGTGAAATGCTGCGGGGTTGTTCTGTTAA
TAACACTCCCAGTGCTTGCTGCTTGTTTTTCTGTTTGGTGATAATGACTG
TTTGTAGAGTCACTAGACGATGGAGGCAAGATGCTCTATCTGACGCTTGA
GAAGATACCGGAGTTAACAGGCTTAGGTCCATGGATGGGAGTGGTGCAGG
AGGAGGAGCAAGTGACCTCAGATTACCCTGAGGAAAAGAAGGTATTGTAC
GCAAGCATCGTGCTTGCCGTAGAGTCAGACAAGAAGAGGCCCACTTCGGT
TGTATCACGGGAAATGGGAAGTAACTCTGCATTCGTGTTTTAGAAACGCA
CTTGTGGCTGGCTTACTTCAATCGACACGAAGTGGCCCTTGCAGATAGTC
GCGTTGCCACGACCGGCAAATTCTTCACCCCCCGAACAAATACGAATACT
TGCAAATGGATTTCGCAAAAAACTGAAAGTATTGCCTGAGTCTCAGAATG
AGCTCGTGTATTCCATGTGCCCCTGACCATCTACGACTGCTAATAATACT
CGACAATCGAATGAACAGGGGTGGATACTTCTCCGCTTATTTTGAAGCTC
AAGCGAATACTTTCACTTTTTGTGAAAATCATTGCAAGTATTCGTATATA
TCCGGGGGGGGGGAAATCTGTTGAAGTTGCCCAGTAATCTGTTGATTTGG
CTCCACTCTACTAACGGGCGTACGGGTAATAAAAGGCTCCTCCCTCTCAC
AGTTATGATATATTACAGCAGCAGTTATACAAGGTACATGGTGGTCACTT
ACGACAGATGTTGCTTATGATAATGCATCCTCAGGTAGCGTTTTATCTGC
CGTATGAATTGGGCCGTGATACGAAATGTCTGCTGCAGCCAGCTATCCAA
ATTCGCCTTTCCTCAATAACGCACAGGCGGCTGAACTGGCGGCTAAGTCT
CAAAAGGGCGACAAGGGGACTGAAGACGTTGATGATGAATCTGATTTTTT
CGAAGGTGTGTTATTCGAATCCCACACTGAACCTCACGGGCATTGACACG
CCAAAGCATGGCCGTTTCGTTTTTGTTGTTACAAAGGTCAAAGGTGGGTC
TGGTTACTTGCTCCATCCGAGCACCAATAGAATGCTATGCAGATTCTCCC
GACAATGTCGACGTTTTCCGGCGTGCAGGCTGTCCGATGGTAGGGGCGAA
CTGGAGACCTTGCACGAAATTGCCACTGATGTGATCGAAGAGTCGTAAAT
GATCCTTTTTTTCCCCGTCGAAGAAAGGACTTACTTGTCTGTTCTGTGAG
ACACGGATGCGTCCATTCATTTGTACCCGTCCGTCCTGCCCCCATGATCA
GTTGAGTCAAAACTCACTTGCAAGCAAATCTTGGCTCCATATCGATGTCA
GATCCCGACCCGAGCAAGCCGCGACACACGGGAGAGGTCGATGAGGACGG
CTTTTGCCAAGACCTCATGGCTGTGCAGGGAATGAGCGCTGCTATGATTG
CACGACAGGCAGGTGTTAGCAGATTTGATTTGCCCATACTGTATGTCTTG
TGTGAACGAACAGGGTCTATTGGATTTTTGTTTCGCGATGCAGATAGTGA
ACATTGAACATGTGTATCTTTGGTGTGCGAATCTGTAGGTGTAGTGCTTT
CATTGTTTGTTGGGAGTGGGAGGGCTGTACGCAGGGTAGGTTTAATATCG
AAGCGCAGAGCAGCGATACTCCACTTTTATGCGCGTCAAGAATGGCTGGG
TCGAAACAGGATATGTGCTACAAGAGATTGGTTGAAACTGTGGATACAAA
GCGAGCGTCTGATGGTTCGAGAGAGAAGATGTAGTCCAAGCACGGCATAT
GTCGCACGTCGTTGAACGGGAGGTAGTGGACACCTATCTTCAAGTTTTTT
GCATGGCTAGGTGCTGAGTGCCATTTATTCTAAACCTATGTAGTTGGACT
TCTTGACCCCTTTCACCGCGTCATACAACAGGTGCCGAGGAATGGCAATG
CACTGTTCTCCGCTGTTTCGGCTAGTGTTGATTACCACACCACTGGAGAG
CACCTATCTGTCGAGCCGAAGGCGATCGAATTGAAAGCAAAGGAATTGCG
AAAGGTGCGCGTTTCGCTTATGTCCGTATAAAATACCTTTATTGCGGGGG
GGGGGGGTGCAACGAGCAGTGTAAATGTGAGTGGCGATATGATATGAAAA
CAAAATATGGACTGCAGCAAATCCATGTCGCTGTGTCGCTGTTGCTGTAC
AGTTTGGTATCGAGAAAGTGAAACCAGTGTAGACCCCATGGGGCAGGTAC
TAGGTGATCTTTGGGTAAGATAGGTGGCACATGGATGCTGCTACATGGTT
GTATGATCCAGTAACTTTTCCCGCAATAGTTGTCAACGTATGGTGAGCGT
TCAGTCGTCATTGTTCTTTGCGTTCACACAGTACTTTAGATCCTGGCAAT
GAGACCACCGTTGTTCTCTCGCTTTATCCGTAATTATAAGTGCAGCACCT
GCACTATGCAGTGGATGAATCATGGGGCATGTGATTCACAATTGCTTGCA
CACGTTGCCAAGGGCAGAAGTTGTTCTCAGTTGGCGATGAGCAGAATACT
AACTTCGAATAAAAAACAATAATCCACTTTCACTGCATGCCTTCGCGTGT
CCTGCGATATCTTCTCAACATCGGCTCTCTATCGACATCTGTAGAGAGCG
ATCGACTACCTTGCCGACGCGTACAAGCAAGGAAAACAGATTTTCCTGGA
GGGAAACGCCATATCCGCCCGGGAGCTGGTCGGCGCTCAGGCGAAGGCTA
GAAATATGGTAGACGGAGATGAATATCTGAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2980:15549..19280+ >mRNA_H-paniculata_contig2980.8096.1 ID=mRNA_H-paniculata_contig2980.8096.1|Name=mRNA_H-paniculata_contig2980.8096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig2980:15549..19280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGCTTGCCTGCGTGGGCAAAGGGCAAGTCAGTACGTCTGGAACT
GGGGAAGACTCACATCAAATTATTTCTCAAGGAAGAGGAGGACAAACCCA
TTATAGAGATGGCGCGCTTGCCTGCGTGGGCAAAGGGCAAGTCAGTACGT
CTGGAACTGGGGAAGACTCACATCAAATTATTTCTCAAGGAAGAGGAGGA
CAAACCCATTATAGAGGGTGATCTACGTGGAATCGTCCGTCTAGATGGGA
GCTACTGGACCATGGGGTGATCTACGTGGAATCGTCCGTCTAGATGGGAG
CTACTGGACCATGGAGTCACTAGACGATGGAGGCAAGATGCTCTATCTGA
CGCTTGAGAAGATACCGGAGTTAACAGGCTTAGGTCCATGGATGGGAGTG
GTGCAGGAGGAGGAGCAAGTGACCTCAGATTACCCTGAGGAAAAGAAGGT
ATTGTACGCAAGCATCGTGCTTGCCGTAGAGTCAGACAAGAAGAGGCCCA
CTTCGGTTAGTCACTAGACGATGGAGGCAAGATGCTCTATCTGACGCTTG
AGAAGATACCGGAGTTAACAGGCTTAGGTCCATGGATGGGAGTGGTGCAG
GAGGAGGAGCAAGTGACCTCAGATTACCCTGAGGAAAAGAAGGTATTGTA
CGCAAGCATCGTGCTTGCCGTAGAGTCAGACAAGAAGAGGCCCACTTCGG
TTCCGCGACACACGGGAGAGGTCGATGAGGACGGCTTTTGCCAAGACCTC
ATGGCTGTGCAGGGAATGAGCGCTGCTATGATTGCACGACAGGCAGGTCC
GCGACACACGGGAGAGGTCGATGAGGACGGCTTTTGCCAAGACCTCATGG
CTGTGCAGGGAATGAGCGCTGCTATGATTGCACGACAGGCAGGTGTGCCG
AGGAATGGCAATGCACTGTTCTCCGCTGTTTCGGCTAGTGTTGATTACCA
CACCACTGGAGAGCACCTATCTGTCGAGCCGAAGGCGATCGAATTGAAAG
CAAAGGAATTGCGAAAGGTGCCGAGGAATGGCAATGCACTGTTCTCCGCT
GTTTCGGCTAGTGTTGATTACCACACCACTGGAGAGCACCTATCTGTCGA
GCCGAAGGCGATCGAATTGAAAGCAAAGGAATTGCGAAAGAGAGCGATCG
ACTACCTTGCCGACGCGTACAAGCAAGGAAAACAGATTTTCCTGGAGGGA
AACGCCATATCCGCCCGGGAGCTGGTCGGCGCTCAGGCGAAGGCTAGAAA
TATGGTAGACGGAGATGAATATCTGAGGAGAGCGATCGACTACCTTGCCG
ACGCGTACAAGCAAGGAAAACAGATTTTCCTGGAGGGAAACGCCATATCC
GCCCGGGAGCTGGTCGGCGCTCAGGCGAAGGCTAGAAATATGGTAGACGG
AGATGAATATCTGAGG back to top
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