mRNA_H-paniculata_contig2979.8089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2979.8089.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 2.240e-117 Identity = 348/940 (37.02%), Postives = 443/940 (47.13%), Query Frame = 3
Query: 390 DEEDLGIAT----LVSALRSDLDVDGSSRRGTLQGLIDALTGRDDADHSAAAHVLNCISWEAFRIVLSIVE--SPHGKLRGADDATSGVEVVEVDNDVAGGSLSPVGEVEGLALRLLQVMAEVVSPKELHLIALENLQGSYHPKSLQAILTLLRRSTELMAPQQRTKFLEAGMRPALGTLKRMFTAWAGRDPLTRIAAADKDGDYPGDAEGL----------------SSDEDEDDEFSTTITNDTISGGDAYAKPSITTTKAAAKTAEAAVEFIGPLLQQAGEERERAYRRDGALWCSGLSWKMNNGVTSGQTPQMAVPVAVATAGADDPPPRPPATVDTTEAR--ESADRSLASFLAFALSALAVISPKSSVVVYDSSDESKDTAACAAAAPCSSSSDCDETVALARAEGRLVELIVNGATAVDLQLVLLHRYRASYA----KRMRGGRLGKEKGKEVNPSPRPPGVPLKRCFFDQSRLGELLASSDGVQDVSL-GVSALAHLVACSPELRDKLLPMVWSRQTERRLFLPHAQDLMRMKSKIIAGKGLELACFIAERLGSWPDETGAFAFAWAPENESGGEWGSDNFAGGAKDGDRRAVSDETRTERSQERTHA-------------------------------------------------------------FDPYRFDLTGFLQVLIDVVVTCPLASLRSRGHAAMESFLAGADPHSRFRVLQRLVDRCPWPNATGLLLDAFRREIDRGLRPRYQQPPGAAVAADSASTIPSVSSSSSTIVATSAGEGGRGAPADGGF------TSPFASAQAGDFVCEQLRRACRLVIGGLQSSSLLVDMDSRTGAFALARYALVMD----------RSVAG---GRLKLREPERLGSTRVLVQVFLDEMRKTTCGARNAVPGLFRLFILEDAAQRCLQELVL 2882
DEE +G LVS+L DL G R TLQGL D L + + VL+ +SWEAF +V+ +E + +D T E + + S + L+ RL MAE+ SPKELHL+ALE+L ++L+ +LT+LRRST+ M +R KFLEA +RPAL KR+ A D K D ++DED PS AAA AE A +FIGPL++QA E+ AL L+ G+ A VA + G+ V + E ++D SLA+++ FALSAL + S S + +LARA+ RLV ++V+ + +DL+ VLLH YR S+A +R + G EKG+ P+ + G LGE A+ +G +L GVS LA+LVAC P LRDK LP+VWSR+TERRLFLPHA+ LMR +SK +A KGLELACF+AERLG +PD TGAFAF W P +E G D +G R +E T RT A FDP+ DL GFLQVL+DV+V+CPL LR+RGHAA+ + L AD SRFRVL+RLV+ CPWPNA GLLLDAFRREIDR LR + +SPFASA AGD VCEQLRRACR G L +SL+ DMDSRTG ALARYA +D R+ AG GRL+LREP++L ++LVQ LDE+R A NA P FRLFILEDAAQ+CLQEL L
Sbjct: 22 DEEGIGQQCSREQLVSSLERDLQ--GPRVRATLQGLHDMLVDGEQNHSTPVGEVLDTVSWEAFGLVVGCLERFATSASSNNSDSITGTFEKSSDEAETLTTSRDA-DDCAALSERLALAMAEIFSPKELHLMALEHLHAYTKARTLRVVLTILRRSTQQMVTARRWKFLEASLRPALEATKRVGLVAAAGDAPAEPGLPQKSSGSDADEXXXXXXXXXXXXXXXXXLPTADED---------------------MPSRAAYDAAASAAETAADFIGPLMEQASAEQ--------AL----LAVSRVPTAGRGEGRPAAAVVATSAGGSG-------RAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCCTXXXXXXXX---------XXGSEDNPPARESLARAQERLVGIVVD--SPLDLRFVLLHGYRVSFASGVKRRRKRSEGGGEKGESHLPAAKLGGA---------VGLGE--AAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEALMRDRSKRVANKGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGDDXXXXXXXNGGGR---EEAHTPYGHTRTSAHNYEFYGCPDLLSHRYFTIFRPPPTPFHPFRRDVAAWQQRDADAGSSTISENTNPSSRRRLFDPHHLDLAGFLQVLVDVMVSCPLPGLRTRGHAALMALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSSPFASALAGDVVCEQLRRACRR--GPL--ASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNKLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELEL 889
BLAST of mRNA_H-paniculata_contig2979.8089.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI) HSP 1 Score: 333 bits (854), Expect = 5.600e-97 Identity = 307/861 (35.66%), Postives = 398/861 (46.23%), Query Frame = 3
Query: 390 DEEDLGIATLVSALRSDL--DVDGSSRRGTLQGLIDALTGRDDADHSAAAHVLNCISWEAFRIVLSIVE------SPH--GKLRGADDATSG-VEVVEVDNDVAG-GSLSPVGEVEGLALRLLQVMAEVVSPKELHLIALENLQGSYHPKSLQAILTLLRRSTELMAPQQRTKFLEAGMRPALGTLKRMFTAWAGRDPLTRIAAADKDGDYPGDAEGLSSDEDEDDEFSTTITNDTISGGDAYAKPSITTTKAAAKTAEAAVEFIGPLLQQAGEERERAYRRDGALWCSGLSWKMNNGVTSGQTPQMAVPVAVATAGADDPPPRPPATVDTTEARESADRSLASFLAFALSALAVISPKSSVVVYDSSDESKDTAACAAAAPCSSSSDCDETVALARAEGRLVELIVNGATAVDLQLVLLHRYRASYA----KRMRGGRLGKEKGKEVNPSPRPPGVPLKRCFFDQSRLGELLASSDGVQDVSL-GVSALAHLVACSPELRDKLLPMVWSRQTERRLFLPHAQDLMRMKSKIIAGKGLELACFIAERLGSWPDETGAFAFAWAPENESGGEWGSDNFAGGAKDGDRRAVSDETRTERSQERTHAFDPYRFDLTGFLQVLIDVVVTCPLASLRSRGHAAMESFLAGADPHSRFRVLQRLVDRCPWPNATGLLLDAFRREIDRGLRPRYQQPPGAAVAADSASTIPSVSSSSSTIVATSAGEGGRGAPADGGFTSPFASAQAGDFVCEQLRRACRLVIGGLQSSSLLVDMDSRTGAFALARYALVMD----------RSVAG---GRLKLREPERLGSTRVLVQVFLDEMRKTTCGARNAVPGLFRLFILEDAAQRCLQELVL 2882
DEE +G+ AL S L D+ G R TLQGL D L + + +A VL+ +SWEAF +V+ +E SP+ G + G + +S E + D +LS EGLAL MAE+ SPKELHL+ LE+L ++++ +LT+LRRSTE MA +R+KFLEA +RPAL KR+ A D K + D PS AAA AE A +FIGPL++QA ER L SGL G+ A VA G+ E ++D SLA+++ FALSAL + S T S + +LARAE RL+ ++V+ + +DL+ LLH R SYA +R R G E+GK P+ R G +G A+ +G +L GVS LA+LVAC P LRDK LP+VWSR+TERRLFLPHA+ LMR +S+ +A KGLELACF+AERLG +PD +GA+AF W P +E G D +G G +VL+DV+V+CPL LR+RGHAA+ + L+GAD SRFR+L+RLV+ CPWPN L RACR G L +SL+ DMDSRTG ALARYA +D R+ AG GRL LREP++L R+LVQ LDE+R A NA P FRLFILEDAAQ+CLQEL L
Sbjct: 22 DEEGIGLQCSREALVSSLERDLQGPRVRVTLQGLYDMLVDGEHSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFEKSSDEAETLTTSRDADDCAALS-----EGLAL----AMAEIFSPKELHLMTLEHLHAYTKARTVRVVLTILRRSTERMATARRSKFLEASLRPALKAAKRVGLVAAAGDAPAEPGLRQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXLLPTADGD-MPSSAAYDAAASAAETAADFIGPLMEQASAERA-------LLAVSGLPT-----AGRGEGRPAAAAVAXXXGGSGH-----AVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXTG---------SEDNPAAGESLARAEERLIGIVVD--SPLDLRFALLHGCRVSYASGVKRRRRKSEGGGEEGKSQLPAARLGGA-----------VGLAEAAVNGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSRRVANKGLELACFVAERLGGFPDRSGAYAFDWEPGDEEIDGAGDDXXXXXXWNGG----------------------------GRQEVLVDVMVSCPLPGLRTRGHAALVAILSGADEASRFRLLRRLVELCPWPN---------------------------------------------------------------------------------LLRACRR--GPL--ASLMADMDSRTGGLALARYAHKLDAVGGARADSGRAEAGAAWGRLGLREPKKLLQNRLLVQGLLDELRGAVITANNAGPEHFRLFILEDAAQQCLQELEL 720 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2979.8089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2979.8089.1 >prot_H-paniculata_contig2979.8089.1 ID=prot_H-paniculata_contig2979.8089.1|Name=mRNA_H-paniculata_contig2979.8089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=856bp MTASVKLLRAAACAHQGGADEEDLGIATLVSALRSDLDVDGSSRRGTLQGback to top mRNA from alignment at H-paniculata_contig2979:2062..8426+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2979.8089.1 ID=mRNA_H-paniculata_contig2979.8089.1|Name=mRNA_H-paniculata_contig2979.8089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6365bp|location=Sequence derived from alignment at H-paniculata_contig2979:2062..8426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2979:2062..8426+ >mRNA_H-paniculata_contig2979.8089.1 ID=mRNA_H-paniculata_contig2979.8089.1|Name=mRNA_H-paniculata_contig2979.8089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5136bp|location=Sequence derived from alignment at H-paniculata_contig2979:2062..8426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |