mRNA_H-paniculata_contig2977.8086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2977.8086.1
Unique NamemRNA_H-paniculata_contig2977.8086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 9.790e-104
Identity = 275/555 (49.55%), Postives = 314/555 (56.58%), Query Frame = 1
Query:   31 RTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGSKTSTEE-----EHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVSGVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGET-YDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            + GLG ESECT C  G++CA+ GLTA  G C  GYYCP GS+ S  +      H+          V  P  C  GTYNPS                            Q+R +                         DC  CS G YCETTGL  PT  C++G+YCKR V+ AAPT G    SGVEYGGDLCPVG+   NGT TPLPC AGT+NDL+GQ  CF+CP+G+YCEAN+T YD+ PXXXXXXXXXXXXXXXXXXXXXXX  N ++TSS  NCVDA  XXXXXXXXXXXXXXXXX      XXXXXXXXXXX                    EGSPY +ACPGGS+C+D+SG I G+CY GYYC Q + TP+P  E   DG+                   +AC  GTYS STG +N T CL C PGF C  A+T+VPTE         AGT +ATLQC  GEAC ESS EP                   XXXXXXX XX     XXXXX  CPAG++W TQ  CP GTFG  TNLV  + CSTC PG
Sbjct: 2172 QAGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPST---------------------------QKRAVE------------------------DCTACSEGYYCETTGLVEPTGPCHSGHYCKRKVDTAAPTTGITIESGVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXANMTMTSSEENCVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVEGVCDTGGPCVAGQYCPEGSPYWRACPGGSYCNDASGVITGDCYAGYYCVQGAKTPSPENEVDEDGNXXXXXXXXXXXXXXXXXXXQACPSGTYSGSTGNTNSTACLPCTPGFICPNASTSVPTEXXXXXXXXXAGTAEATLQCSVGEACLESSGEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYCPAGTMWATQHRCPRGTFGEETNLVNATMCSTCTPG 2675          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: D0MZ33_PHYIT (Ephrin_rec_like domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZ33_PHYIT)

HSP 1 Score: 258 bits (660), Expect = 5.360e-71
Identity = 192/556 (34.53%), Postives = 243/556 (43.71%), Query Frame = 1
Query:   52 SECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNG-----TYFVSGVE----YGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            +EC +C  G YCA  GL  P G C AG +CP  +     +T+  + HVCP G Y   G   P+ CPTGTY+   G                                              L   G     DCV C             PT  C AGYYCKR     +P++G     T    G E    +GG +CP+GS    G  TP+ C  G++++  G   C  CP GF+C    + Y  N XXXXXXXXXXXXXXXXXXXXXX Y + +    +  C  AP                   GFYC+                               EGS  P  C  G++CS ++      C  G+YC Q S+T  P G+     +IGD+C +GHYCP G+  P  C PG+YS +T  +N + CLSC PGF C  +    P E CPAGF CP G   AT  C  G  CPE S+EP  C AGT+ +  G A C          XX     XXXXX  CP  +    ++ C  G+FG+   L    EC+ C PG
Sbjct: 1220 TECQNCTPGSYCATLGLLQPTGLCAAGSFCPPRAESAFGRTADNDTHVCPAGAYXPEGTFLPSPCPTGTYSNDTG----------------------------------------------LVKPG-----DCVFCDEXXXXXXXXXXXPTGLCDAGYYCKRNNTQPSPSSGVVKVVTSSTQGTELTIYFGGQICPIGSYCSQGAVTPILCPEGSYSNATGASTCLPCPRGFFCPLGCSDYRGNEXXXXXXXXXXXXXXXXXXXXXXSYGDRTGLQDLVQCTPAPGGTFIDGYAAVEPTGICRSGFYCSGGSATSTPAETTVTGGPCLPGTNCP------EGSAVPIVCDAGAYCSSTNTDAALPCKEGFYCVQGSYTATPTGQNNSLGMIGDVCTRGHYCPQGTSNPIPCLPGSYSETTQNANASYCLSCSPGFICSTSGIVTPFEKCPAGFICPGGESSATQPCPKGSECPEGSFEPRSCPAGTFADEKGLASCKLCPERYYCXXXXXXXXXXXXXYYCPLQTPSPRKYPCLAGSFGDQIALASSKECAQCPPG 1718          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A6G0S9T2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S9T2_9STRA)

HSP 1 Score: 232 bits (591), Expect = 6.410e-62
Identity = 175/568 (30.81%), Postives = 227/568 (39.96%), Query Frame = 1
Query:   16 GTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVS---------GVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            GT+S+   L   +EC DC  G +C    L  P G C AG +CP  S     KT   E HVCP G Y   G   P  CP GTY+   G                                              L   G     DCV C             P+  C AG++CKR    + PT+G   ++          + +GG  CP GS    G+ +P+ C  G++ ++ G   C +             Y  N XXXXXXXX               + N +    +S C  AP                   GFYC+                               EGS  P  C  G++CS ++      C+ G+YC Q S+T  P G+     IIGD+C  GHYCP G+  P  C PGTYS +T   + + CL C PGF C  +    P + CP G+ C  G   AT  C  G  CPE S+EP  C AGT+ +  G A C  XXXXXXX XX     XXXXX  CP  +   T++ C  G+FG+   L    EC+ C  G
Sbjct:  979 GTFSSTVRLTNVTECVDCTPGSFCDSVALIQPTGLCAAGNFCPRRSESAFGKTGANETHVCPAGAYXPQGTYLPTPCPVGTYSNDTG----------------------------------------------LVQPG-----DCVFCDEXXXXXXXXXXXPSGLCDAGFFCKRNSTRSNPTSGVVKITVKTVDSAELAMYFGGQACPTGSYCPQGSGSPILCPEGSYTNVTGSPTCLAXXXXXXXXLGCNDYLTNEXXXXXXXXERTQRATQFPCLPGSFGNQTRLQDISQCTSAPGGTYIDEPAAVKPKGNCRSGFYCSGGSPTGTPTETTATGGPCLPGTNCP------EGSAVPIVCDAGAYCSSTNTDAALPCHEGFYCVQGSYTATPTGQNNSLGIIGDVCTSGHYCPQGTSNPIPCPPGTYSETTQNVDASYCLPCSPGFVCNTSALVTPFDKCPGGYVCAGGASTATQLCPKGFECPEGSFEPRACPAGTFADEEGLARCXXXXXXXXXXXXXXXXXXXXXXYYCPLQTPSATKYPCLAGSFGDQRALASSKECAPCPRG 1489          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A6G0M0R9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M0R9_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.190e-61
Identity = 175/568 (30.81%), Postives = 226/568 (39.79%), Query Frame = 1
Query:   16 GTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVS---------GVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            GT+S+   L   +EC DC  G +C    L  P G C AG +CP  S     KT   E HVCP G Y   G   P  CP GTY+   G                                              L   G     DCV C             P+  C AG++CKR    + PT+G   ++          + +GG  CP GS    G+ +P+ C  G++ +  G   C +             Y  N XXXXXXXX               + N +    +S C  AP                   GFYC+                               EGS  P  C  G++CS ++      C+ G+YC Q S+T  P G+     IIGD+C  GHYCP G+  P  C PGTYS +T   + + CL C PGF C  +    P + CP G+ C  G   AT  C  G  CPE S+EP  C AGT+ +  G A C  XXXXXXX XX     XXXXX  CP  +   T++ C  G+FG+   L    EC+ C  G
Sbjct: 2409 GTFSSTVRLTNVTECVDCTPGSFCDSVALIQPTGLCAAGNFCPRRSESAFGKTGANETHVCPAGAYXPQGTYLPTPCPVGTYSNDTG----------------------------------------------LVQPG-----DCVFCDEXXXXXXXXXXXPSGLCDAGFFCKRNSTRSNPTSGVVKITVKTVDSAELAMYFGGQACPTGSYCPQGSGSPILCPEGSYTNATGSPTCLAXXXXXXXXLGCNDYLTNEXXXXXXXXERTQRATQFPCLPGSFGNQTRLQDISQCTSAPGGTYIDEPAAVKPKGNCRSGFYCSGGSPTGTPTETTATGGPCLPGTNCP------EGSAVPIVCDAGAYCSSTNTDAALPCHEGFYCVQGSYTATPTGQNNSLGIIGDVCTSGHYCPQGTSNPIPCPPGTYSETTQNVDASYCLPCSPGFVCNTSALVTPFDKCPGGYVCAGGASTATQLCPKGFECPEGSFEPRACPAGTFADEEGLARCXXXXXXXXXXXXXXXXXXXXXXYYCPLQTPSATKYPCLAGSFGDQRALASSKECAPCPRG 2919          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A6A3NX77_9STRA (Ephrin_rec_like domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NX77_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.160e-61
Identity = 175/568 (30.81%), Postives = 225/568 (39.61%), Query Frame = 1
Query:   16 GTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVS---------GVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            GT+S+   L   +EC DC  G +C    L  P G C AG +CP  S     KT   E HVCP G Y   G   P  CP GTY+   G                                              L   G     DCV C             P+  C AG++CKR    + PT+G   ++          + +GG  CP GS    G+ +P+ C  G++ +  G   C +             Y  N XXXXXXXX               + N +    +S C  AP                   GFYC+                               EGS  P  C  G++CS ++      C+ G+YC Q S+T  P G+     IIGD+C  GHYCP G+  P  C PGTYS +T   +   CL C PGF C  +    P + CP G+ C  G   AT  C  G  CPE S+EP  C AGT+ +  G A C  XXXXXXX XX     XXXXX  CP  +   T++ C  G+FG+   L    EC+ C  G
Sbjct: 1671 GTFSSTVRLTNVTECVDCTPGSFCDSVALIQPTGLCAAGNFCPRRSESAFGKTGANETHVCPAGAYXPQGTYLPTPCPVGTYSNDTG----------------------------------------------LVQPG-----DCVFCDEXXXXXXXXXXXPSGLCDAGFFCKRNSTRSNPTSGVVEITMKTVDSAELAMYFGGQACPTGSYCPQGSGSPILCPEGSYTNATGSPTCLAXXXXXXXXLGCNDYLTNEXXXXXXXXERTQRATQFPCLPGSFGNQTRLQDISQCTPAPGGTYIDEPAAVKPKGNCRSGFYCSGGSPTGTPTETTATGGPCLPGTNCP------EGSAVPIVCDAGAYCSSTNTDAALPCHEGFYCVQGSYTATPTGQNNSLGIIGDVCTSGHYCPQGTSNPIPCPPGTYSETTQNVDANYCLPCSPGFVCNTSALVTPFDKCPGGYVCAGGASTATQLCPKGFECPEGSFEPRACPAGTFADEEGLARCXXXXXXXXXXXXXXXXXXXXXXYYCPLQTPSATKYPCLAGSFGDQRALASSKECAPCPRG 2181          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A6A3PAM2_9STRA (Ephrin_rec_like domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3PAM2_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.160e-61
Identity = 175/568 (30.81%), Postives = 225/568 (39.61%), Query Frame = 1
Query:   16 GTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVS---------GVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            GT+S+   L   +EC DC  G +C    L  P G C AG +CP  S     KT   E HVCP G Y   G   P  CP GTY+   G                                              L   G     DCV C             P+  C AG++CKR    + PT+G   ++          + +GG  CP GS    G+ +P+ C  G++ +  G   C +             Y  N XXXXXXXX               + N +    +S C  AP                   GFYC+                               EGS  P  C  G++CS ++      C+ G+YC Q S+T  P G+     IIGD+C  GHYCP G+  P  C PGTYS +T   +   CL C PGF C  +    P + CP G+ C  G   AT  C  G  CPE S+EP  C AGT+ +  G A C  XXXXXXX XX     XXXXX  CP  +   T++ C  G+FG+   L    EC+ C  G
Sbjct: 1743 GTFSSTVRLTNVTECVDCTPGSFCDSVALIQPTGLCAAGNFCPRRSESAFGKTGANETHVCPAGAYXPQGTYLPTPCPVGTYSNDTG----------------------------------------------LVQPG-----DCVFCDEXXXXXXXXXXXPSGLCDAGFFCKRNSTRSNPTSGVVEITMKTVDSAELAMYFGGQACPTGSYCPQGSGSPILCPEGSYTNATGSPTCLAXXXXXXXXLGCNDYLTNEXXXXXXXXERTQRATQFPCLPGSFGNQTRLQDISQCTPAPGGTYIDEPAAVKPKGNCRSGFYCSGGSPTGTPTETTATGGPCLPGTNCP------EGSAVPIVCDAGAYCSSTNTDAALPCHEGFYCVQGSYTATPTGQNNSLGIIGDVCTSGHYCPQGTSNPIPCPPGTYSETTQNVDANYCLPCSPGFVCNTSALVTPFDKCPGGYVCAGGASTATQLCPKGFECPEGSFEPRACPAGTFADEEGLARCXXXXXXXXXXXXXXXXXXXXXXYYCPLQTPSATKYPCLAGSFGDQRALASSKECAPCPRG 2253          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A024GJ40_9STRA (CTLH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJ40_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.990e-56
Identity = 168/474 (35.44%), Postives = 205/474 (43.25%), Query Frame = 1
Query:   10 PAGTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGT--CEAGYYCPIGS-----KTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVS---GVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDATL 1401
            P GT+S  T L   ++CT C  G YC   G T P     C AG+ C +GS     K ++  E  CP G +C  G  +P  CP GTY                                                     T   ++   C LC  G YC TTGL+    SC AGY+CKRG   A PT G    S    ++ GG+ CP G     GT  PLPC  GT+ +  G   C  CP+G+ C  NS  +D + XXXXXXXXXXXXXXXXXXXXXX Y  T    S + C  AP                   GFYC+                    XXXXX      EGS  P  CP G +C+ S  +    C  G    Q ++TP P G++     IG++CPQGHYCP     P  C PGTYS  T   N  +C  C PGF C  +    P   CP G++CP     ATL
Sbjct: 1690 PMGTFSNSTNLIDSAQCTPCRVGMYCDGIGRTTPTDFWFCAAGFMCSLGSMTPYGKNASVSEMECPKGHFCPLGTAHPLPCPMGTY---------------------------------------------------ANTTKLEMETQCTLCEEGAYCATTGLTHVQGSCDAGYFCKRGNVDATPTYGVTNHSVNDAIQIGGNPCPKGFFCPKGTSEPLPCPMGTYANEMGASECAICPAGYVCPKNSITFDAHXXXXXXXXXXXXXXXXXXXXXXXTYGATEKLQSEAQCTSAPGGTFIDTYASIRPVGLCALGFYCSGGSTSKTPIANTLTGGPCPMXXXXX------EGSSRPFTCPAGRYCTSSDIERSLPCQAGXXXVQGAYTPTPTGQSNGFGTIGNVCPQGHYCPENCSHPIPCPPGTYSDITQLQNEEECRPCTPGFICNASGIIRPLHACPEGYFCPGNDAQATL 2106          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: A0A2G8JZJ3_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JZJ3_STIJA)

HSP 1 Score: 215 bits (548), Expect = 2.690e-56
Identity = 174/623 (27.93%), Postives = 237/623 (38.04%), Query Frame = 1
Query:   10 PAGTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGSKTSTEEEH----VCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILFIIGTTNALWQSYRQRRLIAKWYGHDSS------------------------------GKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVSGVEYGGDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCE-----------------------ANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCS-DSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDAT---LQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAG------SLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            P GTYS RTGL   S+C  C  G++C + G+T     C AGYYC   ++  T  +               G  +P  CP GTY+   G  T +           T      +Y Q +  A+                                     G   +    A A    +C  CS G YCET GL+ PT  C  GYYC  G     P N              CPV  XXX     P+PC+  T+ +     +C  CP+G++C+                       ANS+ Y+  P  XXXXXXXXX            + N ++++++++CV   A                  G+YC                                 GSPYP  C GGS+C+ D      G C  GYYC   +  P P     DG++ GD CP G YCP GS +P  C  G + +ST     +DCL C  G+ C  +    PT+ C AG+YCP G  + T     C               C++G YQ+ TGQ  C +             P        CP G      + + T+F CP GTF N+T+  + S+C  C PG
Sbjct: 1270 PRGTYSNRTGLNETSQCDPCCGGYFCPNEGMTECLDLCYAGYYCKRNAEDGTPSQDPDADXXXXXXXXPNGTADPLGCPPGTYSDQFGLETVDDCSDC------TPGYYCDNYAQTQPTAEXXXXXXXXXXXXXXXXXXXXXXXXXXNGTFDPTPCPRGTYSNDTNKAAAS---ECYPCSGGFYCETEGLTIPTGECAEGYYCPDGTIYREPNN------------TFCPVXXXXXGANSYPIPCQNNTYVNYTHAVMCLDCPAGYFCKFQGEQEIXXXXXXXPAGTXXXXXANSSSYEEQPCPXXXXXXXXXEFGEQFKCSPGTFNNLTISNNLTDCVSCLAGYYCASNGLPWPSGLCEGGYYCDGGSTTATPSGSGGDRCLAGTFCPP--------GSPYPTPCDGGSYCAADLMTNTSGLCDPGYYCHLRATVPNPN----DGNVTGDECPLGAYCPEGSASPLLCDAGYFLNSTHNDEESDCLPCTAGYYCAGSGNPEPTDVCQAGYYCPPGQREPTPAEYNCTXXXXXXXXXXXXVRCDSGYYQDETGQFACKDCPEGYFC-DNTFEPVVLYNSSMCPTGFYCPMNTYYATEFPCPRGTFNNLTHRTDLSDCQPCAPG 1858          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: UPI0014257123 (uncharacterized protein LOC117111255 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257123)

HSP 1 Score: 215 bits (548), Expect = 2.830e-56
Identity = 190/597 (31.83%), Postives = 250/597 (41.88%), Query Frame = 1
Query:   10 PAGTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGSKTSTEEEHVCPVGRYCEAGVGNPALCPTGTY-NPSEGTTTEEARGGIILF----IIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLT--TAGAKLRLD----CVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPT---NGTYFVSGVEYG-GDLCPVGSXXXNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWCSDSSGQII-----------------GECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAG-TVDAT--LQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSP------TXXXXXXXCPAGSLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            PAGTY+        S+C  C  G YC D GL  P+G C+ G++CP G   S   ++ CP+G +C  G   P  C  GTY N ++  +  E   G        I G +++ ++   Q      +Y    +G+ W++    T GA+  L+    C  C  G YC+ T L++PTD C  GY+C   V+ A PT   N T    G   G G +CP G     G++ P+ C AGT+ DL+G+  C  CP+G+YC ANST Y +  XXXXXXXXX              + N +   S+S+C+D                     G+YC                                  +PY   C  G +C   S + +                 G+       +  S T  P G      + GD C        GS   + C PGTY  S    N T CL C  G  C  +    P   C  GFYCP G TV A    +C  G  C E       C AGTYQN  GQ  C E XXX       + P        XXXXXX P G+   T + CP GTF NIT L    EC+ CL G
Sbjct: 4254 PAGTYTNTMNRYDVSQCELCDEGTYCNDTGLFEPSGECDPGFFCPEGQHVSNPADYPCPIGLHCPQGSPLPIPCDPGTYTNLTQQPSCLECPAGFYCVPEEVIEGNSSSGFRLCPQG-----YYCPAGTGRNWTACPRGTYGARPGLEDEEGCTNCDGGYYCQGTNLTSPTDLCDPGYFCTSRVDRANPTAFENDTCSYEGAHTGYGGVCPTGHFCERGSELPIGCPAGTYQDLEGKADCNDCPAGYYCLANSTTYMDTIXXXXXXXXXGTEYDIQFPCPQGTFNNLTGGHSLSSCIDC-LPGMYCEGAGDYPTDFCNAGWYCISGAYEPQPS------------------------APYGGECQPGQYCPIGSSKPLSXXXXXXXDVTGMEEPRGDXXXXXXXSNGSSTATPNG------VGGDRCSPXXXXVEGSYNEQPCLPGTYQPSEIAENSTWCLECTAGMYCNDSGLPTPEGRCTQGFYCPGGQTVPAPNEYRCPVGYYCEEGVGNKEACPAGTYQNEEGQWTCKECXXXFYC-DDVNGPIINFTSNVXXXXXXXPNGTTAATSYACPIGTFNNITGLTNADECTHCLGG 4813          
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Match: UPI001458F264 (LOW QUALITY PROTEIN: uncharacterized protein LOC117317428 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458F264)

HSP 1 Score: 211 bits (538), Expect = 5.740e-55
Identity = 198/592 (33.45%), Postives = 254/592 (42.91%), Query Frame = 1
Query:   10 PAGTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIGSKTSTEEEHVCPVGRYCEAGVGNPALCPTGTY-NPSEGTTTEEARGGIILFIIGT-------------TNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSSGQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGT----------YFVSGVEYGGDLCPVGSXXXNGTDT--PLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPXXXXXXXXXXXXXXXXXXXXXXXYVNTSLTSSVSNCVDAPAXXXXXXXXXXXXXXXXXEGFYCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSPYPQACPGGSWC-SDSSGQIIGECYGGYYCTQXSWTPAPGGETYDGDIIGDICPQGHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTEPCPAGFYCPAGTVDAT---LQCGAGEACPESSWEPTECEAGTYQNSTGQAECIEXXXXXXXLXXASSPTXXXXXXXCPAG------SLWETQFLCPNGTFGNITNLVEESECSTCLPG 1677
            P GTYS  T L   SEC  CP G YC   GLTAP G C  GYYCP G+         C            P  C   T  N +          G    + G              T   W+S             D S                 C  C     C+   L+A T  C AG++C  G++   P              Y    + YGG +CP+G+    GT +  P+PC+ GT+ D  G   C +CP+G++C   ++ Y +NPXXXXXXXXXXXXXXXXXXXXXX Y N ++ +S+++C+  P                   G+YC                XXXXXXXXXXXXXXXX        C  GS+C +D      G C  GYYCT  +    P     DG++ GDICP G YCPAGS AP  C  GTY +STG    TDC++C           +VP   C AG+YCPAG  + T               S  P  C +G+YQ+  GQ+ C +             P        CP G      +   T+F CP GT+ NIT+    ++C+ C  G
Sbjct: 2429 PQGTYSNMTHLTNSSECLSCPGGSYCETAGLTAPTGLCGQGYYCPEGTIYKEPGASFCXXXXXXXXXXXQPIPCRNYTQVNHTHAVQCNACPAGFYCDLTGLSTIXXXXXXXPAGTGIDWKSXXXXXXXXXXXXSDES----------------QCKPCXXXXXCDGEHLTAATGDCAAGHWCVYGIDRQYPDGNNQSSAVWNISCYDDRQLGYGG-ICPIGNYCPGGTASVYPIPCDNGTYADTTGMPACTTCPAGYFCGEGTSNYTDNPXXXXXXXXXXXXXXXXXXXXXXTYNNLTMRTSIADCLSCPGGEYCERPGLTFPSGLCMAGYYCDSGSATATPSGVGGNNXXXXXXXXXXXXXXXX--------CTPGSFCGTDLLNMTSGLCDPGYYCTLMATVSNP----TDGNVTGDICPIGTYCPAGSTAPLLCQAGTYLNSTGNDADTDCVACIXXXXXXXXXNSVPDGLCSAGYYCPAGQDNPTPSSYNXXXXXXXXXXSITPLRCPSGSYQDDIGQSWC-KACPAGYFCDSTMDPVVLFNSSYCPTGFYCLENTTMSTEFPCPAGTYNNITHRTVVTDCTPCSGG 2990          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2977.8086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR26_ECTSI9.790e-10449.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D0MZ33_PHYIT5.360e-7134.53Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A6G0S9T2_9STRA6.410e-6230.81Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0M0R9_9STRA1.190e-6130.81Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3NX77_9STRA2.160e-6130.81Ephrin_rec_like domain-containing protein n=7 Tax=... [more]
A0A6A3PAM2_9STRA2.160e-6130.81Ephrin_rec_like domain-containing protein n=6 Tax=... [more]
A0A024GJ40_9STRA1.990e-5635.44CTLH domain-containing protein n=1 Tax=Albugo cand... [more]
A0A2G8JZJ3_STIJA2.690e-5627.93Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
UPI00142571232.830e-5631.83uncharacterized protein LOC117111255 n=1 Tax=Annei... [more]
UPI001458F2645.740e-5533.45LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2977contigH-paniculata_contig2977:238..4812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.0
Seed ortholog evalue1.3e-97
Seed eggNOG ortholog2880.D8LR26
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons10
Model size1677
Cds size1677
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2977.8086.1prot_H-paniculata_contig2977.8086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2977 238..4812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929908.0173209-CDS-H-paniculata_contig2977:237..4001622929908.0173209-CDS-H-paniculata_contig2977:237..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 238..400 -
1691481064.6615064-CDS-H-paniculata_contig2977:237..4001691481064.6615064-CDS-H-paniculata_contig2977:237..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 238..400 -
1622929908.0339835-CDS-H-paniculata_contig2977:981..11141622929908.0339835-CDS-H-paniculata_contig2977:981..1114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 982..1114 -
1691481064.677623-CDS-H-paniculata_contig2977:981..11141691481064.677623-CDS-H-paniculata_contig2977:981..1114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 982..1114 -
1622929908.0601282-CDS-H-paniculata_contig2977:1561..18111622929908.0601282-CDS-H-paniculata_contig2977:1561..1811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 1562..1811 -
1691481064.6870537-CDS-H-paniculata_contig2977:1561..18111691481064.6870537-CDS-H-paniculata_contig2977:1561..1811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 1562..1811 -
1622929908.081402-CDS-H-paniculata_contig2977:2244..23781622929908.081402-CDS-H-paniculata_contig2977:2244..2378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 2245..2378 -
1691481064.6984825-CDS-H-paniculata_contig2977:2244..23781691481064.6984825-CDS-H-paniculata_contig2977:2244..2378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 2245..2378 -
1622929908.0995054-CDS-H-paniculata_contig2977:2808..28941622929908.0995054-CDS-H-paniculata_contig2977:2808..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 2809..2894 -
1691481064.7100751-CDS-H-paniculata_contig2977:2808..28941691481064.7100751-CDS-H-paniculata_contig2977:2808..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 2809..2894 -
1622929908.1192284-CDS-H-paniculata_contig2977:3074..32301622929908.1192284-CDS-H-paniculata_contig2977:3074..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 3075..3230 -
1691481064.7190156-CDS-H-paniculata_contig2977:3074..32301691481064.7190156-CDS-H-paniculata_contig2977:3074..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 3075..3230 -
1622929908.138413-CDS-H-paniculata_contig2977:3586..39121622929908.138413-CDS-H-paniculata_contig2977:3586..3912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 3587..3912 -
1691481064.730295-CDS-H-paniculata_contig2977:3586..39121691481064.730295-CDS-H-paniculata_contig2977:3586..3912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 3587..3912 -
1622929908.1600158-CDS-H-paniculata_contig2977:4122..42711622929908.1600158-CDS-H-paniculata_contig2977:4122..4271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4123..4271 -
1691481064.738512-CDS-H-paniculata_contig2977:4122..42711691481064.738512-CDS-H-paniculata_contig2977:4122..4271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4123..4271 -
1622929908.1795204-CDS-H-paniculata_contig2977:4300..44241622929908.1795204-CDS-H-paniculata_contig2977:4300..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4301..4424 -
1691481064.7493927-CDS-H-paniculata_contig2977:4300..44241691481064.7493927-CDS-H-paniculata_contig2977:4300..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4301..4424 -
1622929908.193413-CDS-H-paniculata_contig2977:4656..48121622929908.193413-CDS-H-paniculata_contig2977:4656..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4657..4812 -
1691481064.7951992-CDS-H-paniculata_contig2977:4656..48121691481064.7951992-CDS-H-paniculata_contig2977:4656..4812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2977 4657..4812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2977.8086.1

>prot_H-paniculata_contig2977.8086.1 ID=prot_H-paniculata_contig2977.8086.1|Name=mRNA_H-paniculata_contig2977.8086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=559bp
IAAPAGTYSTRTGLGAESECTDCPSGHYCADPGLTAPNGTCEAGYYCPIG
SKTSTEEEHVCPVGRYCEAGVGNPALCPTGTYNPSEGTTTEEARGGIILF
IIGTTNALWQSYRQRRLIAKWYGHDSSGKLWSSLTTAGAKLRLDCVLCSS
GQYCETTGLSAPTDSCYAGYYCKRGVEGAAPTNGTYFVSGVEYGGDLCPV
GSYCPNGTDTPLPCEAGTFNDLDGQGVCFSCPSGFYCEANSTKYDNNPCP
AGYYCPEGTRYGQEYPCPPGTYVNTSLTSSVSNCVDAPAGWYVSSSASTE
VTGKCEEGFYCTGGSFSATPYCNETSEGVCTTGGPCVAGEYCPEGSPYPQ
ACPGGSWCSDSSGQIIGECYGGYYCTQGSWTPAPGGETYDGDIIGDICPQ
GHYCPAGSVAPRACSPGTYSSSTGFSNITDCLSCEPGFTCRYANTTVPTE
PCPAGFYCPAGTVDATLQCGAGEACPESSWEPTECEAGTYQNSTGQAECI
ECPAGYYCLSGASSPTDCPTGSYCPAGSLWETQFLCPNGTFGNITNLVEE
SECSTCLPG
back to top

mRNA from alignment at H-paniculata_contig2977:238..4812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2977.8086.1 ID=mRNA_H-paniculata_contig2977.8086.1|Name=mRNA_H-paniculata_contig2977.8086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4575bp|location=Sequence derived from alignment at H-paniculata_contig2977:238..4812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGGCCCCGGCAGGCACATACAGCACCCGAACTGGTCTCGGGGCGGA GAGCGAGTGCACCGATTGCCCGTCGGGACATTACTGCGCTGATCCGGGCC TCACCGCGCCCAATGGTACATGCGAGGCCGGGTATTACTGCCCTATAGGT TCAAAGGTAGGAACCCGAGGAGAGAGCGAAGCGGAGCGCCAGCGGTTGAG TGGGAGAGTTTGTCGTTGGTGGTAATAGTGTCGCTGCAACGTACACGTTA TCCTGGTTGAACGTAGGAAATTCACGCCATTACGGTCAAGCATTATTTGC CACATTTCCCCACACCGTGTAACCCTACGCGCACCTCGTGCCTCCACCCC CGATTGATACTTGGGGAATGTAGAACTCACATGGTGAGACAAGTACGGAG GAGGAGCATGTGTGTCCAGTTGGTCGATACTGCGAGGCTGGTGTTGGTAA CCCGGCCCTATGCCCGACGGGAACGTACAATCCTTCTGAGGGAACCACTA CCGAAGAGGCGAGTTGAGGTCCGCAGACCAGAGTGGGCGAGGGGGGGGCA TCATACTGTTTATTATAGGAACCACAAATGCATTATGGCAGAGCTATCGG CAGAGGCGTTTAATCGCTAAGTGGTACGGACACGACAGTAGCGGAAAACT GTGGTCGTCGCTGACTACTGCTGGGGCAAAGCTTAGGCTTGTGCAGAAAG ACTTATACTTGTGAGCACAGAGCATGAATGTATATTGTGCCTTCTGAATA GTCAGTGATATCCTCAAATATGATGCAAGAGATCATGAAAGGAACATATG CAACTTGTTGAAAATCATCACTGCTCCCTGCTCCTTCACTTTACCGACTT TTCGGTCTGATCTCGTTCATTTGGCCGCCATCGCATAAAACAAAAAACAG GACTGCGTCCTTTGTTCTTCCGGACAATACTGCGAGACAACGGGCTTGTC AGCTCCCACCGACTCGTGCTACGCTGGATACTACTGCAAACGCGGAGTGG AAGGGGCCGCACCTACGAACGGGACTTACTTCGTATCCGGAGTAGAGTAC GGAGGAGACCTTTGTCCGGTGGGAAGCTACTGCCCAAACGGAACCGATAC CCCCTTGCCCTGTGAAGCAGGGACGTTCAACGACCTCGACGGACAAGGTG TATGTTTCTCGTGTCCCAGCGGGTTCTACTGCGAGGCGAACTCTACCAAA TACGACAATAACCCCTGTCCTGCAGGGTGAGAGCGATATGCGGAGCGTAC CTTTGTTGTGGCCAGTATGGATACTGCGATACCATACTTTTTGTTTTTGT TTGGTGGATTGACTTTTGGGCCTACCAGCCCTATGAGTTTGGCTTCTTAC ATGCTGCGCGTACTGCCTACTGCCGTCCCCGAAACTGCAGTTCCCTACCC TACATCAACCAGTTATTTGCCGTGAAAAGAATCCAACCTAATGTCTGGCG TGAATCTCCATCTGGCTCAAGCGTAAGGTGCGTTTGAGAGCGGCGATCTT ATTCTGCTACTGTGATCAGTCAATAAAGACACACCCTTCCCCCTCCTTCT CACTGTCTCCTCCCAATACCATTTATTGGCAGATACTATTGTCCGGAAGG TACTCGATATGGGCAGGAGTACCCATGCCCTCCTGGCACTTATGTCAACA CAAGCTTGACATCGTCGGTGTCTAACTGTGTCGATGCTCCGGCCGGGTGG TATGTCTCGAGTTCGGCAAGTACGGAGGTTACGGGAAAGTGAGTACGCAT GATGATCAGCCGACTTCAACGAAGTGTGCTTATTTTTCCTCGGCTAAGAA GCTCGTTGTGAACCTGAAAACATACTATGCCGAAGCTAAACACTCGTGAC CTTCTAGACTGCTGACGCCCTGAGTTTGGGCATATCACATCTACGTTTCC CCCTATTTGCTCTGATAGGTGTGAGGAGGGATTTTACTGCACGGGAGGGT CATTCTCAGCTACGCCGTACTGCAATGAGACATCAGAGGGCGTATGCACG ACCGGTGTGCATGAGCCGATGTGGGCTCGGAACGGAAATACTGATCATAT CGAAAAACTTCTATACAATTGATTGCTCATTCTGGTCATATCGTCATTTG AGAGGTTGGAATTTTTGTTGTCCTCAATCGGACTCTGTTGGAAGCAGGGG GCATTCTTTGAAGGTTTACCCTTCAAGCGTTATATTCGGAGTACGCTACA GGACGAAACGGGAAGTACAGACTGTCTTGCCGAGAAGGTGTATCTAGTGC ACTAGGCCAAGTTCGGGGCGATAAATCATACGACGTTCAATTACACGTCC AGATTCCCAGTAAAAGCCTGGCGTCTTGGCCATTCATGGTACCCCGCCTC CCCAATTCCTGGAAACATGTATTGAAACTAATTTATTTTACACCGACGCA TCTCACACATATATCTTGCCACGCCTCCTTATAGGTGGACCATGTGTGGC AGGAGAATACTGCCCTGAGGGTTCTCCGTATCCGCAGGCATGTCCTGGGG GAAGTTGGTGCTCTGACTCAAGTGGGCAAATTATCGGCGAATGCTACGGA GGATACTATTGTACGCAGGTGGGTCTGTTTTTTGGCGGAATGTCATTTTA TCTTTTGGAAGGATGCATTGACCAACTACAGAGTCACCACTACACTTTGT TTGCTAGTGGCCAAAAATACAACATCTACCACAGTGACTAGCACCTGCAG TATGTGGTCTGCTTCGCGTCAAACGCACACAAATGCCGTTTGATTTGCTG CGATGGGGGGCATTTTCGGGCCTGTCTCTTTCTACGATAAATACCGATTT TGTCCTTTGTGGCCAAATTGTAGCACCTGGTATTGAACCATGAGGGGCTC TTTGACGCAAACATTCAGGAGAGCGTTTGCGCCGACGGACCGGAAACACA CGTGCCAATAGGAGCCCGTTGCTTTAGGTCAAATACCGCGCATTATGTCA GTAACACGCCGCCGCCTCCCACGAAATGACGACTCCCATGGCATATATTA GGGGTCATGGACACCCGCCCCAGGAGGCGAAACATACGATGGTGACATCA TTGGTGATATCTGCCCTCAAGGTCATTACTGCCCGGCGGGTTCGGTGGCC CCTCGTGCTTGCTCACCCGGCACATATTCTTCATCAACTGGGTTCTCGAA TATAACAGATTGTTTGTCCTGCGAGCCAGGCTTCACATGTCGTTATGCAA ACACCACCGTACCTACTGAGCCGTGTCCCGCAGGATTCTACTGCCCCGCA GGTAAGTAGGCACCTATTATAGAGCTCTGCACTGGAAGAGGGTGTTGTGA TCACATAGGGCTTGTCCCAAGTCCGTTTTGTGCAAAAGAGGATGAACTTA ATCGTTCAGGCTATCGCTTGGAGTCCGTTTTACAAGTAGTGTTTTCGACC GATGTGGAGCGTTTCCCTAAGCTTACGTTAGGTCTGTGTCGTATTTTGCG TGAGAAGCAAAACGCGTAATAGACAAAAGTGATGATCCAGCCGCCGCCGC CGCGTTGCCGTCCTCCTCGCGCTTCTCCCTCTCTCTCATCTACGACAGCT TTGCCGAATAGATCTCGGTTTCTAGTGCTTTCGGGTGAAGTTATCTGAAA TTCACCTGATACATAAAGGTTGAATGAGTATGCACATGAAAGGTTTTGTT CTGAACCAAAAAAGCAGCAACTAACACACCGATTTCCGACATACACAGGA ACCGTCGACGCCACGCTACAGTGCGGAGCGGGTGAGGCTTGCCCAGAATC ATCTTGGGAACCGACAGAATGCGAGGCGGGGACTTATCAGAATTCCACTG GTCAAGCGGAGTGCATCGAGTGTCCGGCAGGGTGAGAATTTGTGAAAGGA TGATGACCTGCATAAGTTTGGTTCAGCAACTGCGCCTGACCAGTGAAGTA TATGCAGGACTCGCTTGAGAAATCGTTTGTTCCGAATTCGAAAACGTTCT TCAACTGTAAGCAGTCACATTTGTTGCCATCTGTCTAGTTAGGGACGGTG GCTGTTGATGTCCCGCCACCAGTTTTCATCAATATTTGTAAGCTAATTAT TTCTCTCAACAGGCTGGCCTCGCTCCCTTTGTTACACCCATACCAGTCGC CCTCATTAGTCAAGGCATTCAGGAATAGAGTATTCCGAAGAACACCTCAA TTCGAGGCACCTGACGCAAGGGGGAGGGGTAGGATTTGAGACAATTTTCG TTTTCATGCGCTTAGGTAAGACACAGGAGTGCTTTGTCCATGAGATTTCA CGTTGAACCCTGCCTAGTCAGCGGAATAATTGTACATAGCAGTATCTGAA TTTGCATGTTGTGAGAAGGCAGCTACTACATCAGAGCTACATCGGTTGTC CCAGGCAAGCAATCCCACAGAACAACCCGATATGGTCTTGCGTCCTGATT TTGTCGCAATAGGTATTACTGCCTATCTGGAGCATCTTCACCTACGGATT GCCCCACTGGCAGCTATTGCCCAGCCGGTTCGCTCTGGGAAACGCAATTC CTGTGCCCAAATGGTACCTTCGGCAACATTACCAATCTAGTAGAGGAGTC AGAGTGTAGCACGTGCTTACCAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2977:238..4812-

>mRNA_H-paniculata_contig2977.8086.1 ID=mRNA_H-paniculata_contig2977.8086.1|Name=mRNA_H-paniculata_contig2977.8086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3354bp|location=Sequence derived from alignment at H-paniculata_contig2977:238..4812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGGCCCCGGCAGGCACATACAGCACCCGAACTGGTCTCGGGGCGGA
GAGCGAGTGCACCGATTGCCCGTCGGGACATTACTGCGCTGATCCGGGCC
TCACCGCGCCCAATGGTACATGCGAGGCCGGGTATTACTGCCCTATAGGT
TCAAAGATCGCGGCCCCGGCAGGCACATACAGCACCCGAACTGGTCTCGG
GGCGGAGAGCGAGTGCACCGATTGCCCGTCGGGACATTACTGCGCTGATC
CGGGCCTCACCGCGCCCAATGGTACATGCGAGGCCGGGTATTACTGCCCT
ATAGGTTCAAAGACAAGTACGGAGGAGGAGCATGTGTGTCCAGTTGGTCG
ATACTGCGAGGCTGGTGTTGGTAACCCGGCCCTATGCCCGACGGGAACGT
ACAATCCTTCTGAGGGAACCACTACCGAAGAGGCGAACAAGTACGGAGGA
GGAGCATGTGTGTCCAGTTGGTCGATACTGCGAGGCTGGTGTTGGTAACC
CGGCCCTATGCCCGACGGGAACGTACAATCCTTCTGAGGGAACCACTACC
GAAGAGGCGAGGGGGGGCATCATACTGTTTATTATAGGAACCACAAATGC
ATTATGGCAGAGCTATCGGCAGAGGCGTTTAATCGCTAAGTGGTACGGAC
ACGACAGTAGCGGAAAACTGTGGTCGTCGCTGACTACTGCTGGGGCAAAG
CTTAGGCTTGGGGGGGCATCATACTGTTTATTATAGGAACCACAAATGCA
TTATGGCAGAGCTATCGGCAGAGGCGTTTAATCGCTAAGTGGTACGGACA
CGACAGTAGCGGAAAACTGTGGTCGTCGCTGACTACTGCTGGGGCAAAGC
TTAGGCTTGACTGCGTCCTTTGTTCTTCCGGACAATACTGCGAGACAACG
GGCTTGTCAGCTCCCACCGACTCGTGCTACGCTGGATACTACTGCAAACG
CGGAGTGGAAGGGGCCGCACCTACGAACGGGACTTACTTCGTATCCGGAG
TAGAGTACGGAGGAGACCTTTGTCCGGTGGGAAGCTACTGCCCAAACGGA
ACCGATACCCCCTTGCCCTGTGAAGCAGGGACGTTCAACGACCTCGACGG
ACAAGGTGTATGTTTCTCGTGTCCCAGCGGGTTCTACTGCGAGGCGAACT
CTACCAAATACGACAATAACCCCTGTCCTGCAGGGACTGCGTCCTTTGTT
CTTCCGGACAATACTGCGAGACAACGGGCTTGTCAGCTCCCACCGACTCG
TGCTACGCTGGATACTACTGCAAACGCGGAGTGGAAGGGGCCGCACCTAC
GAACGGGACTTACTTCGTATCCGGAGTAGAGTACGGAGGAGACCTTTGTC
CGGTGGGAAGCTACTGCCCAAACGGAACCGATACCCCCTTGCCCTGTGAA
GCAGGGACGTTCAACGACCTCGACGGACAAGGTGTATGTTTCTCGTGTCC
CAGCGGGTTCTACTGCGAGGCGAACTCTACCAAATACGACAATAACCCCT
GTCCTGCAGGATACTATTGTCCGGAAGGTACTCGATATGGGCAGGAGTAC
CCATGCCCTCCTGGCACTTATGTCAACACAAGCTTGACATCGTCGGTGTC
TAACTGTGTCGATGCTCCGGCCGGGTGGTATGTCTCGAGTTCGGCAAGTA
CGGAGGTTACGGGAAAATACTATTGTCCGGAAGGTACTCGATATGGGCAG
GAGTACCCATGCCCTCCTGGCACTTATGTCAACACAAGCTTGACATCGTC
GGTGTCTAACTGTGTCGATGCTCCGGCCGGGTGGTATGTCTCGAGTTCGG
CAAGTACGGAGGTTACGGGAAAGTGTGAGGAGGGATTTTACTGCACGGGA
GGGTCATTCTCAGCTACGCCGTACTGCAATGAGACATCAGAGGGCGTATG
CACGACCGGTGTGAGGAGGGATTTTACTGCACGGGAGGGTCATTCTCAGC
TACGCCGTACTGCAATGAGACATCAGAGGGCGTATGCACGACCGGTGGAC
CATGTGTGGCAGGAGAATACTGCCCTGAGGGTTCTCCGTATCCGCAGGCA
TGTCCTGGGGGAAGTTGGTGCTCTGACTCAAGTGGGCAAATTATCGGCGA
ATGCTACGGAGGATACTATTGTACGCAGGTGGACCATGTGTGGCAGGAGA
ATACTGCCCTGAGGGTTCTCCGTATCCGCAGGCATGTCCTGGGGGAAGTT
GGTGCTCTGACTCAAGTGGGCAAATTATCGGCGAATGCTACGGAGGATAC
TATTGTACGCAGGGGTCATGGACACCCGCCCCAGGAGGCGAAACATACGA
TGGTGACATCATTGGTGATATCTGCCCTCAAGGTCATTACTGCCCGGCGG
GTTCGGTGGCCCCTCGTGCTTGCTCACCCGGCACATATTCTTCATCAACT
GGGTTCTCGAATATAACAGATTGTTTGTCCTGCGAGCCAGGCTTCACATG
TCGTTATGCAAACACCACCGTACCTACTGAGCCGTGTCCCGCAGGATTCT
ACTGCCCCGCAGGGGTCATGGACACCCGCCCCAGGAGGCGAAACATACGA
TGGTGACATCATTGGTGATATCTGCCCTCAAGGTCATTACTGCCCGGCGG
GTTCGGTGGCCCCTCGTGCTTGCTCACCCGGCACATATTCTTCATCAACT
GGGTTCTCGAATATAACAGATTGTTTGTCCTGCGAGCCAGGCTTCACATG
TCGTTATGCAAACACCACCGTACCTACTGAGCCGTGTCCCGCAGGATTCT
ACTGCCCCGCAGGAACCGTCGACGCCACGCTACAGTGCGGAGCGGGTGAG
GCTTGCCCAGAATCATCTTGGGAACCGACAGAATGCGAGGCGGGGACTTA
TCAGAATTCCACTGGTCAAGCGGAGTGCATCGAGTGTCCGGCAGGGAACC
GTCGACGCCACGCTACAGTGCGGAGCGGGTGAGGCTTGCCCAGAATCATC
TTGGGAACCGACAGAATGCGAGGCGGGGACTTATCAGAATTCCACTGGTC
AAGCGGAGTGCATCGAGTGTCCGGCAGGGTATTACTGCCTATCTGGAGCA
TCTTCACCTACGGATTGCCCCACTGGCAGCTATTGCCCAGCCGGTTCGCT
CTGGGAAACGCAATTCCTGTGCCCAAATGGTACCTTCGGCAACATTACCA
ATCTAGTAGAGGAGTCAGAGTGTAGCACGTGCTTACCAGGTGTATTACTG
CCTATCTGGAGCATCTTCACCTACGGATTGCCCCACTGGCAGCTATTGCC
CAGCCGGTTCGCTCTGGGAAACGCAATTCCTGTGCCCAAATGGTACCTTC
GGCAACATTACCAATCTAGTAGAGGAGTCAGAGTGTAGCACGTGCTTACC
AGGT
back to top