mRNA_H-paniculata_contig2976.8081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2976.8081.1
Unique NamemRNA_H-paniculata_contig2976.8081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2976.8081.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.430e-23
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1 
Query:  310 MRAAPTPGRQRKQDGTGEMARRWGEHPDEEDDGVKDTLDR------SPR--RTSVSTSLRHVRLSEDGKRVTVHSSEKGVDHELALNELVEVQGTPSKNRVVLRGRKLELRIGFEGDANAFKQFRQALVPNVDNGNTTSS 705
            M AAPTPGR+ + + T  MA+R   + ++ED+  ++ L        SP   +T VST LRH+RLS DG  + V S + GVDHELAL+EL+EV  TPS+  V L G  +E+RI F+G A A KQFR  LVP    G TT S
Sbjct:    1 MMAAPTPGRESEGERTWIMAKRVASNWEKEDESSRNRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSEQGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGTTTPS 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2976.8081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ27_ECTSI4.430e-2347.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2976contigH-paniculata_contig2976:5477..8202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001190.1
Exons5
Model size742
Cds size741
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2976.8081.1prot_H-paniculata_contig2976.8081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2976 5477..8201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.8150778-CDS-H-paniculata_contig2976:5476..56011622929907.8150778-CDS-H-paniculata_contig2976:5476..5601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 5477..5601 +
1691481064.5842338-CDS-H-paniculata_contig2976:5476..56011691481064.5842338-CDS-H-paniculata_contig2976:5476..5601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 5477..5601 +
1622929907.8338518-CDS-H-paniculata_contig2976:6481..67311622929907.8338518-CDS-H-paniculata_contig2976:6481..6731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 6482..6731 +
1691481064.6012099-CDS-H-paniculata_contig2976:6481..67311691481064.6012099-CDS-H-paniculata_contig2976:6481..6731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 6482..6731 +
1622929907.8515592-CDS-H-paniculata_contig2976:6743..68081622929907.8515592-CDS-H-paniculata_contig2976:6743..6808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 6744..6808 +
1691481064.6108813-CDS-H-paniculata_contig2976:6743..68081691481064.6108813-CDS-H-paniculata_contig2976:6743..6808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 6744..6808 +
1622929907.8688593-CDS-H-paniculata_contig2976:7492..76101622929907.8688593-CDS-H-paniculata_contig2976:7492..7610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 7493..7610 +
1691481064.6273243-CDS-H-paniculata_contig2976:7492..76101691481064.6273243-CDS-H-paniculata_contig2976:7492..7610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 7493..7610 +
1622929907.8900864-CDS-H-paniculata_contig2976:8018..82011622929907.8900864-CDS-H-paniculata_contig2976:8018..8201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 8019..8201 +
1691481064.6388798-CDS-H-paniculata_contig2976:8018..82011691481064.6388798-CDS-H-paniculata_contig2976:8018..8201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 8019..8201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2976.8081.1

>prot_H-paniculata_contig2976.8081.1 ID=prot_H-paniculata_contig2976.8081.1|Name=mRNA_H-paniculata_contig2976.8081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
VSFDGSREQLNAVGDEGEGEEREGIGGLPPGPATTFKKPPLRSTSMVSAK
SISEPAEQDFPHDTYDEEEAYLNVVTGVASSPARADKPARSLKRMNSVPS
IKEMRAAPTPGRQRKQDGTGEMARRWGEHPDEEDDGVKDTLDRSPRRTSV
STSLRHVRLSEDGKRVTVHSSEKGVDHELALNELVEVQGTPSKNRVVLRG
RKLELRIGFEGDANAFKQFRQALVPNVDNGNTTSSASNARGDAAKDY
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mRNA from alignment at H-paniculata_contig2976:5477..8202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2976.8081.1 ID=mRNA_H-paniculata_contig2976.8081.1|Name=mRNA_H-paniculata_contig2976.8081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2726bp|location=Sequence derived from alignment at H-paniculata_contig2976:5477..8202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGTTTTGACGGTAGCAGGGAGCAGCTAAACGCCGTGGGGGATGAAGG
AGAGGGTGAGGAGCGAGAGGGGATTGGAGGGCTGCCCCCTGGCCCAGCAA
CCACGTTTAAGAAGCCTCCTCTTAGGTGGGCATGGGAAGTGCTGTGTTTG
TGGGCCATATTTCGAGGATAGTTTTCATGGTGCTGGTGCTAGCGAACTGT
CGTTTTGGGGTTATTGGGCTTGGAGTTGTGTCTGTGTGTGTGGGGGGTGA
CCGTCATCGTTGTTTTCATTTACAGTAGGTACACGTGTGGGTTATGTCGA
CGTCGAAAGCCGAATGTACTGATCTTGATGGTGAACATGCGGACTGTTTT
TTTGTCGTGTGACAAGGGCCGGCGCTCTTTGTGCTGTCGTGCAGCCGCGG
GTGGAGTATAAGGAAGATTTCGTTGGCTCGTGACATTGGGTAAGTTTATA
TAGTCGTGTGCCGTGACCTGTAGTCATGGCACAATTTTTCGCTTTGGGCT
TTTGGGTAGGGTATGTAGCCGTGACGTGACTGTTGAGCTTTTACAATCCG
GGTGATTGCTGTCTTTTGGTGTATTTGCTCAGTTTTTTTTTTTATCTCAG
CTGAGAATCACAGTCGGGGCATCCAACGAACTTCGTGTGGTCATATTACA
TAAAACACTGGGTGCTCGTGCTGAGGGAAGCGCATACATGTACGTAGATA
CGTTGTGTTTTGTCCACTCTCCATTTGATACATGATAAGACCCAGCACAC
AGACAGGGGACTTGTTTTATGCTTTGGGGAGGGGAACGTTTACGCTTGTT
TTCGTCATATCTTGTATCACGTTGCCCTCGCCTTGTTCCATTTTTTCCTC
AAAACTATTGCCCTCCCCCTTCCCTGACGTCCCACCAACCAGCTGTCGAC
ACCCTACACAAGGAAAAATTCAGGAGGGCATTCGATCGATTTTCTCTAAT
TCTATTTTTGGGTTTGGTTCGTTGCCATTTTTTTCTTCTGTTTTTTTATT
GATAGAAGCACAAGCATGGTCTCCGCCAAATCCATCAGTGAGCCCGCCGA
ACAAGACTTTCCCCATGACACCTACGACGAGGAAGAGGCATACCTCAACG
TTGTCACCGGCGTCGCCAGTTCGCCAGCTCGAGCAGATAAACCAGCAAGA
TCCTTGAAACGCATGAACTCCGTACCCTCTATCAAAGAGATGCGGGCCGC
CCCGACCCCTGGGCGGCAGCGCAAGCAGGATGGGACAGGCGAGATGGCGC
GGCGGGTTGTGGCTAAGTGGGGCGAGCACCCCGATGAAGAAGATGATGGG
GTGAAAGACACGCTTGATAGATCTCCAAGGAGGTCAGTGAACTAGAGGGG
TGCGTAGGTTTTGAATGGTGGGGTGACGGTCATCACACTGCAAGATTATT
TTGTGACTGGTTCTGTAACTGTCGGGAATGGAGAGGCTGGGATTAGAATC
ATGGATATTTTCTTCGCAAGGTTTTGAGCATTTGTAGTCGTGATATTCAG
GATGACCTACTGTTTGTGTACTTTGGTAGTAGTAGTAGTGGTGGTGGTTA
TACTAGCTGGGCGTGGGGCTACCCGAATGCAGTCGGTGTTTTGGCTCTTT
CCTGTACAAATCTTGTGTATATACTACCAAAGGCATCCATGTCTCACTCT
CGAAGGCATGCACTTTCTGTACGGTAGGTAGGCTTGTCGCATCGTGGTCC
GTGCACAAACACAGAGGGCCCAAATGCTTGAACGAAGAAGAGAAAAAGCC
CTTCCGAGAAGGGCCACGGTAATAATGAAGTCGTGTTGTGTTGACCAGGT
AGAAATCCTCCCCCCTCATGATGTTATTTTGTTGATGAGTGTGTACAAGT
GATGTTTGAAGTCAGCTGCATACCTTTACGTGGGTATAATGGAGATCATT
AAATGAGCTTGAGAGCTGTAGTTCAACTAACTGTGTCAAGGTTGACTTAC
AAAAGAATTTTCCGGTTCTACCCCTCCCTGCTCTGTTCGGTGACGCATAC
TTCGTTTTATAAAAAGGACGAGCGTGTCGACGTCTCTGCGGCATGTCCGC
TTGTCTGAAGACGGGAAGAGGGTAACGGTTCACTCGAGTGAGAAGGGTGT
GGACCACGAACTCGCGCTCAACGAATTGGTTGAGGTAAGTCTTGAATCCC
TTACTGCTGGTTTAATACCGCGCCACTTGAGAATCCTTCAATGCCTACCC
TTTTTTTTGCTCATGGTTGAGGCTGTGTACAAATATTGATATCATGCAAA
ATAAGTAAGATGAAAGCATCCTCCAGTTAAACTCCGATGAAGATAAAGAA
GCAGGACTGCTAGTTAACCTGTCAAGTCCTGTGTGTCATTAGCGCTATAT
TCAATTTCCGAGCTGAAGGATTCCTCCAAACCATACTCGTAGTGGTCACT
GTAGTTGTACTCTAACTTGAAGTGGCAAGTGGCTGCCGTCCAGATCGTTT
CCAACACAGACGTCCTGCTCCCGATTTCCCCGTCACTATCTCATTGTCTC
ACTACACGCATGAATTCCTTCACTGTGGTGATCCTCGCACAGGTCCAGGG
GACCCCGTCCAAAAATCGCGTCGTTCTGAGAGGCCGAAAGCTGGAGCTGC
GCATAGGATTCGAAGGAGACGCCAATGCTTTCAAGCAATTCCGCCAAGCA
CTCGTACCTAACGTCGACAACGGAAACACCACAAGCTCCGCGAGCAACGC
TCGCGGAGACGCAGCCAAGGACTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig2976:5477..8202+

>mRNA_H-paniculata_contig2976.8081.1 ID=mRNA_H-paniculata_contig2976.8081.1|Name=mRNA_H-paniculata_contig2976.8081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig2976:5477..8202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGTTTTGACGGTAGCAGGGAGCAGCTAAACGCCGTGGGGGATGAAGG
AGAGGGTGAGGAGCGAGAGGGGATTGGAGGGCTGCCCCCTGGCCCAGCAA
CCACGTTTAAGAAGCCTCCTCTTAGGTCAGTTTTGACGGTAGCAGGGAGC
AGCTAAACGCCGTGGGGGATGAAGGAGAGGGTGAGGAGCGAGAGGGGATT
GGAGGGCTGCCCCCTGGCCCAGCAACCACGTTTAAGAAGCCTCCTCTTAG
AAGCACAAGCATGGTCTCCGCCAAATCCATCAGTGAGCCCGCCGAACAAG
ACTTTCCCCATGACACCTACGACGAGGAAGAGGCATACCTCAACGTTGTC
ACCGGCGTCGCCAGTTCGCCAGCTCGAGCAGATAAACCAGCAAGATCCTT
GAAACGCATGAACTCCGTACCCTCTATCAAAGAGATGCGGGCCGCCCCGA
CCCCTGGGCGGCAGCGCAAGCAGGATGGGACAGGCGAGATGGCGCGGCGG
AAGCACAAGCATGGTCTCCGCCAAATCCATCAGTGAGCCCGCCGAACAAG
ACTTTCCCCATGACACCTACGACGAGGAAGAGGCATACCTCAACGTTGTC
ACCGGCGTCGCCAGTTCGCCAGCTCGAGCAGATAAACCAGCAAGATCCTT
GAAACGCATGAACTCCGTACCCTCTATCAAAGAGATGCGGGCCGCCCCGA
CCCCTGGGCGGCAGCGCAAGCAGGATGGGACAGGCGAGATGGCGCGGCGG
TGGGGCGAGCACCCCGATGAAGAAGATGATGGGGTGAAAGACACGCTTGA
TAGATCTCCAAGGAGTGGGGCGAGCACCCCGATGAAGAAGATGATGGGGT
GAAAGACACGCTTGATAGATCTCCAAGGAGGACGAGCGTGTCGACGTCTC
TGCGGCATGTCCGCTTGTCTGAAGACGGGAAGAGGGTAACGGTTCACTCG
AGTGAGAAGGGTGTGGACCACGAACTCGCGCTCAACGAATTGGTTGAGGA
CGAGCGTGTCGACGTCTCTGCGGCATGTCCGCTTGTCTGAAGACGGGAAG
AGGGTAACGGTTCACTCGAGTGAGAAGGGTGTGGACCACGAACTCGCGCT
CAACGAATTGGTTGAGGTCCAGGGGACCCCGTCCAAAAATCGCGTCGTTC
TGAGAGGCCGAAAGCTGGAGCTGCGCATAGGATTCGAAGGAGACGCCAAT
GCTTTCAAGCAATTCCGCCAAGCACTCGTACCTAACGTCGACAACGGAAA
CACCACAAGCTCCGCGAGCAACGCTCGCGGAGACGCAGCCAAGGACTACG
TCCAGGGGACCCCGTCCAAAAATCGCGTCGTTCTGAGAGGCCGAAAGCTG
GAGCTGCGCATAGGATTCGAAGGAGACGCCAATGCTTTCAAGCAATTCCG
CCAAGCACTCGTACCTAACGTCGACAACGGAAACACCACAAGCTCCGCGA
GCAACGCTCGCGGAGACGCAGCCAAGGACTAC
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