mRNA_H-paniculata_contig2976.8082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2976.8082.1
Unique NamemRNA_H-paniculata_contig2976.8082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2976.8082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2976contigH-paniculata_contig2976:8481..10015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1002
Cds size999
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.6546137-CDS-H-paniculata_contig2976:8480..91761622929907.6546137-CDS-H-paniculata_contig2976:8480..9176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 8481..9176 +
1691481064.5196517-CDS-H-paniculata_contig2976:8480..91761691481064.5196517-CDS-H-paniculata_contig2976:8480..9176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 8481..9176 +
1622929907.6756704-CDS-H-paniculata_contig2976:9711..100141622929907.6756704-CDS-H-paniculata_contig2976:9711..10014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 9712..10014 +
1691481064.5327566-CDS-H-paniculata_contig2976:9711..100141691481064.5327566-CDS-H-paniculata_contig2976:9711..10014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 9712..10014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2976.8082.1prot_H-paniculata_contig2976.8082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2976 8481..10014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2976.8082.1

>prot_H-paniculata_contig2976.8082.1 ID=prot_H-paniculata_contig2976.8082.1|Name=mRNA_H-paniculata_contig2976.8082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp
KKGYVVETTGPSPARIIIHAVVPPLHHNNPASSSLDPGNTITDPSPASAY
APSSRSGGGGDGAGMQTTDLSAPSPANVSTAGTSAALRVKEHELQPRAGL
EASSFSSAGAEGVTSKYVVAGPSPSPAGSSYYAPPSVPSSGRGGPLTGSS
VSTDFGSSAIGSANASSSAHQATFGSKFSAPSPASEFVYSGGVEGDGHDD
DDDAHDGEESVLPQAAGVVDDDDEEPPLRRHPPRFSLSMHQDSSASSSSS
IGGVSNISDALSYTSSAFVGSTARRPTGGASLLGSSRKQLQVMPSPSSIA
NRFDGGVSEGPARVLPTQRVITRPLTKEALITS
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mRNA from alignment at H-paniculata_contig2976:8481..10015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2976.8082.1 ID=mRNA_H-paniculata_contig2976.8082.1|Name=mRNA_H-paniculata_contig2976.8082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1535bp|location=Sequence derived from alignment at H-paniculata_contig2976:8481..10015+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAGGGGTATGTTGTCGAGACCACCGGGCCATCTCCGGCGAGAATAAT
TATACACGCCGTTGTCCCGCCCCTCCACCACAACAACCCCGCGTCTTCCT
CTCTTGACCCCGGCAACACCATCACCGATCCTTCTCCTGCCAGCGCCTAC
GCACCCTCGAGCAGGAGCGGCGGCGGTGGTGATGGTGCAGGGATGCAGAC
GACGGATTTGAGCGCGCCGTCCCCAGCCAACGTGTCGACTGCGGGAACAA
GTGCTGCGTTGAGAGTGAAGGAGCACGAGCTCCAACCGAGAGCGGGTTTA
GAAGCTTCTTCTTTTTCGTCTGCCGGGGCGGAGGGGGTAACGAGCAAGTA
TGTGGTGGCCGGGCCCTCGCCATCTCCGGCCGGTAGTAGCTACTATGCCC
CGCCGTCGGTGCCTTCTAGCGGCCGTGGCGGCCCGTTGACAGGGAGCAGC
GTGTCGACCGACTTCGGGTCGTCCGCGATTGGAAGCGCCAATGCTTCATC
TTCTGCCCACCAAGCGACGTTCGGGAGCAAGTTTAGTGCCCCGTCGCCCG
CTAGCGAGTTTGTATATTCGGGGGGGGTCGAGGGTGATGGTCACGATGAT
GATGATGATGCTCATGATGGTGAAGAAAGCGTGCTGCCGCAGGCGGCAGG
AGTGGTTGACGATGATGATGAAGAGCCTCCGTTGCGCCGTCACCCGGTAA
GCGTGTTTTCTTGTTGTGCCAGCGGCACTGGTTTCGAGGAGTGCAGGGTA
CAGGGTATCTACCGCCCTAGTATAGTGTCAATAATTTACTGCTAAAACTT
GTTGCTAAGTACTCCTTGCTGTTTCTCTAACTTGGAAAGGGAGACGAAAT
TAGTTGATAATTGGGCTGAAAAAATTAGTGAACTCCCCTAGACGAGACTT
TGTTTTGTGCCCTTCCATATGTAATGTTGATGCTGGCTAGTTGGACAGGG
TTATCACTCTCCCTTCCTCAACACCCCCACCCTATCGTACCCTACCGGAC
ATACGTAAGACCAGCAATGTTACGGCCAAGCCTCGACACCACACCGCATG
AAAAAGCCACACGATGACATGAAAACGTTACCCTCGTCGCCGCTCCCGCC
ACCGCCCGCTCCCTGCCGCTCCCTTCCCCGTACGCCCCTTCCGGTTTGAC
ACAACGTTCTGTTCACTCGACTAACACGGTCGATGCAAACGAATATTACC
GACCGATTATATATATTTAAATTGTAAACAGCCTCGCTTCTCCCTCAGCA
TGCACCAAGACAGTAGCGCGTCGAGCTCGAGTAGCATCGGCGGGGTTAGC
AACATAAGCGATGCGCTGTCGTACACCTCGTCGGCCTTCGTGGGCTCCAC
TGCGCGTCGTCCCACCGGCGGCGCGTCTCTCCTCGGGAGCTCGCGCAAGC
AGCTGCAGGTCATGCCCTCCCCTTCTTCCATTGCAAATCGCTTCGATGGC
GGAGTCAGCGAAGGCCCTGCACGCGTGCTGCCGACGCAAAGGGTAATCAC
TCGACCGCTGACGAAAGAGGCCCTTATCACTAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2976:8481..10015+

>mRNA_H-paniculata_contig2976.8082.1 ID=mRNA_H-paniculata_contig2976.8082.1|Name=mRNA_H-paniculata_contig2976.8082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at H-paniculata_contig2976:8481..10015+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAGGGGTATGTTGTCGAGACCACCGGGCCATCTCCGGCGAGAATAAT
TATACACGCCGTTGTCCCGCCCCTCCACCACAACAACCCCGCGTCTTCCT
CTCTTGACCCCGGCAACACCATCACCGATCCTTCTCCTGCCAGCGCCTAC
GCACCCTCGAGCAGGAGCGGCGGCGGTGGTGATGGTGCAGGGATGCAGAC
GACGGATTTGAGCGCGCCGTCCCCAGCCAACGTGTCGACTGCGGGAACAA
GTGCTGCGTTGAGAGTGAAGGAGCACGAGCTCCAACCGAGAGCGGGTTTA
GAAGCTTCTTCTTTTTCGTCTGCCGGGGCGGAGGGGGTAACGAGCAAGTA
TGTGGTGGCCGGGCCCTCGCCATCTCCGGCCGGTAGTAGCTACTATGCCC
CGCCGTCGGTGCCTTCTAGCGGCCGTGGCGGCCCGTTGACAGGGAGCAGC
GTGTCGACCGACTTCGGGTCGTCCGCGATTGGAAGCGCCAATGCTTCATC
TTCTGCCCACCAAGCGACGTTCGGGAGCAAGTTTAGTGCCCCGTCGCCCG
CTAGCGAGTTTGTATATTCGGGGGGGGTCGAGGGTGATGGTCACGATGAT
GATGATGATGCTCATGATGGTGAAGAAAGCGTGCTGCCGCAGGCGGCAGG
AGTGGTTGACGATGATGATGAAGAGCCTCCGTTGCGCCGTCACCCGAAAA
AGGGGTATGTTGTCGAGACCACCGGGCCATCTCCGGCGAGAATAATTATA
CACGCCGTTGTCCCGCCCCTCCACCACAACAACCCCGCGTCTTCCTCTCT
TGACCCCGGCAACACCATCACCGATCCTTCTCCTGCCAGCGCCTACGCAC
CCTCGAGCAGGAGCGGCGGCGGTGGTGATGGTGCAGGGATGCAGACGACG
GATTTGAGCGCGCCGTCCCCAGCCAACGTGTCGACTGCGGGAACAAGTGC
TGCGTTGAGAGTGAAGGAGCACGAGCTCCAACCGAGAGCGGGTTTAGAAG
CTTCTTCTTTTTCGTCTGCCGGGGCGGAGGGGGTAACGAGCAAGTATGTG
GTGGCCGGGCCCTCGCCATCTCCGGCCGGTAGTAGCTACTATGCCCCGCC
GTCGGTGCCTTCTAGCGGCCGTGGCGGCCCGTTGACAGGGAGCAGCGTGT
CGACCGACTTCGGGTCGTCCGCGATTGGAAGCGCCAATGCTTCATCTTCT
GCCCACCAAGCGACGTTCGGGAGCAAGTTTAGTGCCCCGTCGCCCGCTAG
CGAGTTTGTATATTCGGGGGGGGTCGAGGGTGATGGTCACGATGATGATG
ATGATGCTCATGATGGTGAAGAAAGCGTGCTGCCGCAGGCGGCAGGAGTG
GTTGACGATGATGATGAAGAGCCTCCGTTGCGCCGTCACCCGCCTCGCTT
CTCCCTCAGCATGCACCAAGACAGTAGCGCGTCGAGCTCGAGTAGCATCG
GCGGGGTTAGCAACATAAGCGATGCGCTGTCGTACACCTCGTCGGCCTTC
GTGGGCTCCACTGCGCGTCGTCCCACCGGCGGCGCGTCTCTCCTCGGGAG
CTCGCGCAAGCAGCTGCAGGTCATGCCCTCCCCTTCTTCCATTGCAAATC
GCTTCGATGGCGGAGTCAGCGAAGGCCCTGCACGCGTGCTGCCGACGCAA
AGGGTAATCACTCGACCGCTGACGAAAGAGGCCCTTATCACTAGCCCTCG
CTTCTCCCTCAGCATGCACCAAGACAGTAGCGCGTCGAGCTCGAGTAGCA
TCGGCGGGGTTAGCAACATAAGCGATGCGCTGTCGTACACCTCGTCGGCC
TTCGTGGGCTCCACTGCGCGTCGTCCCACCGGCGGCGCGTCTCTCCTCGG
GAGCTCGCGCAAGCAGCTGCAGGTCATGCCCTCCCCTTCTTCCATTGCAA
ATCGCTTCGATGGCGGAGTCAGCGAAGGCCCTGCACGCGTGCTGCCGACG
CAAAGGGTAATCACTCGACCGCTGACGAAAGAGGCCCTTATCACTAGC
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