mRNA_H-paniculata_contig2976.8080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2976.8080.1
Unique NamemRNA_H-paniculata_contig2976.8080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2976.8080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2976contigH-paniculata_contig2976:1127..4939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size460
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2976.8080.1prot_H-paniculata_contig2976.8080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2976 1206..4939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.5712407-UTR-H-paniculata_contig2976:1126..12051622929907.5712407-UTR-H-paniculata_contig2976:1126..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2976 1127..1205 +
1691481064.4743173-UTR-H-paniculata_contig2976:1126..12051691481064.4743173-UTR-H-paniculata_contig2976:1126..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2976 1127..1205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.5875087-CDS-H-paniculata_contig2976:1205..14931622929907.5875087-CDS-H-paniculata_contig2976:1205..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 1206..1493 +
1691481064.4947937-CDS-H-paniculata_contig2976:1205..14931691481064.4947937-CDS-H-paniculata_contig2976:1205..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 1206..1493 +
1622929907.6065803-CDS-H-paniculata_contig2976:4846..49391622929907.6065803-CDS-H-paniculata_contig2976:4846..4939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 4847..4939 +
1691481064.508467-CDS-H-paniculata_contig2976:4846..49391691481064.508467-CDS-H-paniculata_contig2976:4846..4939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 4847..4939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2976.8080.1

>prot_H-paniculata_contig2976.8080.1 ID=prot_H-paniculata_contig2976.8080.1|Name=mRNA_H-paniculata_contig2976.8080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MASFFSCLVDCAGFDLLDYPPADEPDVTSRTRDSGTNTHSRYAAGRKVSK
GRRISDKGGEDAEAISVYSSSTGKLVSPSACPPGPLGSSHRSSSKKACPQ
NQVPLATALSDDEGDTCSDDDDSAGVA
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mRNA from alignment at H-paniculata_contig2976:1127..4939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2976.8080.1 ID=mRNA_H-paniculata_contig2976.8080.1|Name=mRNA_H-paniculata_contig2976.8080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3813bp|location=Sequence derived from alignment at H-paniculata_contig2976:1127..4939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCATATAGAATACGGAGCTCCACGAATAGCACAACCCCACCAACGAGCT
GCCGCGAGGATTGGCCACGCCGCAGCTAGATGGCCTCCTTCTTCAGCTGC
CTCGTGGACTGCGCGGGGTTCGACCTGCTCGACTATCCCCCAGCAGATGA
ACCTGACGTGACCAGTCGCACACGTGACAGCGGTACAAACACTCACAGTC
GGTACGCCGCCGGACGCAAAGTAAGCAAGGGTCGACGAATTTCGGACAAA
GGCGGAGAGGATGCCGAGGCAATTTCGGTGTATAGTAGCAGCACAGGAAA
ACTTGTTAGCCCGTCCGCATGCCCTCCAGGACCTCTTGGAAGTTCGCACC
GGAGTTCCTCTAAGAAGGTGAGCGCGCGCGCGGCCCAGGCATGCACGCGC
ACGTTTAGCTACTCCCAATATAAAAAATGGATTTTGAAAGGGGTCAAAGC
AACGGCAGACAAATGAAAGAGCGGGACTGGGGGGGAAACAGAGAGACGAA
AATATAACACTTGTTTCCAGGCTTCGATGGCGGCCGAGTACAGATGACAT
GCTGCTGATAAGGGATGGACTTGTTGCAGCAGAGGAGGGTTTTGATCGTA
GATATATGCCCTTGTGCTAACAGTAGCTCTATTTTTGCCTGTGCGTTGAA
CTGCGTGGGAGGGTGGGGGCGTTGTCGCGTTGTCTCGTGGTTATCGCGGG
TAAACAGCAGTGACTAGATGCTGTTGTGTATGTTATACATTACATGTGTC
TCGGGTTTGACTGCCGTTTATACGGTTGTTTTCGACCTGCAACAAGCGAT
TTCATAGAAAAGCAAAATCGCATGGGGATTTTGAAGACGGAGCCCTGTTT
CGACAGCAAACATGTCGTGCGGTGGTAGGTGAAAAATAATGGAGCTAGTG
GTGGTTGTCCATGCCTAGGACCTTTCGATACTTGCGCCACTGATTCGTTT
TCAATATGTCCAAACAACGATGTCGCCGTGACCACCGTGGCGGGGTACGG
CAGTATGTATGTTCACCACAGGGAAACCTGCCCTTCATGATTTCATAAAT
TAAATTATTATGTACAGCTAAAGGGTGTGCATACTATACGGGCACATGGA
ACAATTTTTTCCATCTTACATGTACAAAAAAGTGCGTCAGGGTGGCTGGG
GCTGGGGCGCTGTGTGTCATCTAAGCTCGAGAGAGAGAGAGAGAGAGAGA
GAGACTGTTTCACGAACAAGTCAACATACTGCTGACCTCGGCCACATGCA
GCAGTAGTATCCGTAAATGTATGGGCACTGAGTACAGTATAGTGCCGCAG
TCACCTTCAACGTGCTTGTGTATTTGCCAAACTCCGTAATGGGCCCACCC
AAAGACATTCCGACCAAAATACATGACGGTCCTCTCTCTCTTGAAAAAAT
TGTTCTTTGTTCTTTGTTCTTTGTTCTAGCATCCCTTCAATCTGGGCTTG
TCGCTATCTACTCTGGTAGGACACATTATGGTGTCCCTCGACATACCTAA
AGAATAGACTTTTCAATGTGTTTTTTTTTTCGTCAACACCGTACGTGCCT
ACGTGCCTAGGGCATGTTTTCTTCTCACAAGGTTTTTCCAAAAAAATCAA
TCAGATTCGAATGAGATATGGCCAAAAATACGGATTTTCCTATGGGGGAA
ATGGTGATTTTCAGGAAAAGTACATTTGCCCCTAGGGAATTCCGGTTTCT
TTGGCTATATCTTTGCCTATCAGGAAGAAACACAAAAAATCGCAGCACAA
GTGTCGCAGCACGACCATTAGGAATATGATAAAAAATGAAAATTGAAAAG
AAATTGAACTGGCGGATACGATGCCGTTATAAAGAAAAACTAATTTTAAC
TGGAATATGACAGAAAATGTTACAAAATGTGCATTTCCACGCTCTTTGGG
TGCCATACGGTGGTTCCTTGCGTCCAAAGGGGGCAACACAAATTAGCTGC
CATGCGTACGAGAGGACAATAGACATGCTTCAGTACTAGAAAGATAAGCA
CTCACTATTTATCGGTGTGTGACATGCCCTCGTTAGGGTACTGAACGAGT
GGCGCGCGACTCGCATTTACAGAGAACATCAATGTCGTTGATTACATTGA
ATCGTTACTCTCATGACTACATGCCTACATGAAGACATCTGATGGCGTCC
CTTGTTCTATATACGTTAATTCTCTCGACGATGACTCCTCATCAGTCCCT
CCTGATGCCGCCTCGCTGGTGCGGTAGCTGCTGCTACAGCAGCAGCAGCT
GATCGTTTCCGTCTATTGTCTAACCTCTTGCCTCCTTTGACTGGTGTATT
TGCTGCAGACCTCACTGCAGTTGATGATAGCTCCACGCCACCAGGCGAGT
CTTTAGACTTGGGACTGTGATGCTGGTTCTGTCCCTGCACTTCCTGTGGG
TTGGACCTCTCGCGTGTCTCCATCTTCGCCATTTTCCTTGTAGAGTTCTT
TTCTTTGTGTGTGTTTTTTTAAACGTGATTTGGCGCCAATAAAGCCTGAA
TAAAAACATGGTGGAATGCCGTGTACAACCGCCGATAGAAGGGGCTCTAC
GGGGCGAATCTCCGAAAACCCCGCTTTTAATCGACGCGCTAGGTCCCAAG
GGAGCCTCTCCAATCATTCTCGTAGCCGCGCGCGCCGTCGTGTAAAAACG
TTTAGAGCTCGAATGGAAATATCGTTTTGTGAGGGGTGATGGCAGCTTTG
GCCGTTGTAACTTTTTGAAAACACATGAATTTTGAATTATTCTTTGTATG
GTTGGAAGCGTCAGAGTTCGGGCTCTCCGGAGATACCTACTTTTGCGCAT
ACAAATGGAAATTTGGGCGAAAGCGGCGTATTTCGTGAGAAAAAGTATTA
TCTAGTTCATCGCTGTTTGTGTGCCTGGCTCAAATATAGCGAAATAAATA
ACTATACCTGTAATGTGCTTTACAAGGACGGGAGCTTCTGCTCTTCATTC
AGGTAAAAATTCAGACAAGACTGAAAACACTATTATTATTATTATTATTA
TTATTTATTATTATCATCATCTCCTTCTGACATTTGCAGACTCGGAAGAA
TGAAAACAAATATACATTGTAGCAACATGCATCATCGGTGGAGATAGCCG
CGGTTGTTTTGCCCACAACTGCTGCGCTCAGCATTTCGTGTCAGCCGCCG
TTAATAATAATGGGGTTAACGAAGTGCGTGATATATGGTCATGCATACAT
TCAAGCAGGCGAGTCGAGAAGGCGTCGTGTGGGATGTCGTGGCAACCAAC
GGTGTTGTTCTGTTCTTATCCTATTTATTCCCTATCTTCTGTCCTACAGG
CGTCTGTTCGTTACTTCGACTCATACATATCTATCAGTGATTCTTATATT
CGAAGCTTGATTTTCGTCTACAAAATTCGACACAGGCCCAATTTTGGATG
AGTGGAAGTGCTCGTCGGCGATTTGGGTCCGTTGTTCCCCGCCGATATCT
TTCACATATATTAACATATTCTGTTATTTTTCTTTTTTTGCCGTCAAATC
CACCGCACCTCAATTCAAATGGATGCTCCGCTTTTGTTCAATTTTGCGAA
AATTCGACATGAATGCCGGAAAACTTTCGCGGCAAAATTGGAGATCTGTT
CCGATAGGGTCGGCATGATCATCTCAGCGTACTATATTGGAGATAAATTT
ATCGTATGGCTATCTTATTTTCACCGTTCCCTCCGCCCTCCCCCGCCCCC
CAACCCCGAATTATCCCTAGGCGTGTCCGCAGAATCAAGTTCCACTTGCT
ACAGCGCTGAGCGATGATGAAGGAGATACCTGTAGCGATGATGATGATTC
TGCTGGTGTTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2976:1127..4939+

>mRNA_H-paniculata_contig2976.8080.1 ID=mRNA_H-paniculata_contig2976.8080.1|Name=mRNA_H-paniculata_contig2976.8080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2976:1127..4939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTCCTTCTTCAGCTGCCTCGTGGACTGCGCGGGGTTCGACCTGCT
CGACTATCCCCCAGCAGATGAACCTGACGTGACCAGTCGCACACGTGACA
GCGGTACAAACACTCACAGTCGGTACGCCGCCGGACGCAAAGTAAGCAAG
GGTCGACGAATTTCGGACAAAGGCGGAGAGGATGCCGAGGCAATTTCGGT
GTATAGTAGCAGCACAGGAAAACTTGTTAGCCCGTCCGCATGCCCTCCAG
GACCTCTTGGAAGTTCGCACCGGAGTTCCTCTAAGAAGATGGCCTCCTTC
TTCAGCTGCCTCGTGGACTGCGCGGGGTTCGACCTGCTCGACTATCCCCC
AGCAGATGAACCTGACGTGACCAGTCGCACACGTGACAGCGGTACAAACA
CTCACAGTCGGTACGCCGCCGGACGCAAAGTAAGCAAGGGTCGACGAATT
TCGGACAAAGGCGGAGAGGATGCCGAGGCAATTTCGGTGTATAGTAGCAG
CACAGGAAAACTTGTTAGCCCGTCCGCATGCCCTCCAGGACCTCTTGGAA
GTTCGCACCGGAGTTCCTCTAAGAAGGCGTGTCCGCAGAATCAAGTTCCA
CTTGCTACAGCGCTGAGCGATGATGAAGGAGATACCTGTAGCGATGATGA
TGATTCTGCTGGTGTTGCAGCGTGTCCGCAGAATCAAGTTCCACTTGCTA
CAGCGCTGAGCGATGATGAAGGAGATACCTGTAGCGATGATGATGATTCT
GCTGGTGTTGCA
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