mRNA_H-paniculata_contig29752.8079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29752.8079.1
Unique NamemRNA_H-paniculata_contig29752.8079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig29752.8079.1 vs. uniprot
Match: L5L122_PTEAL (Radial spoke head 10 like protein B2 n=1 Tax=Pteropus alecto TaxID=9402 RepID=L5L122_PTEAL)

HSP 1 Score: 63.2 bits (152), Expect = 4.900e-9
Identity = 41/121 (33.88%), Postives = 60/121 (49.59%), Query Frame = 1 
Query:   19 GRYTWSNGSSYEGGIFKGLRDGQGTFTCADGTL--VGGTI-GVPPDSGDLENYFDLNGILNTPTRFVPCQVIYEGGWKASKRRGWGVQRYGVGTNEVSSYTGEWADNFRHGRGTMSYASGN 372
            G YTW +GS+YEG +  GLR+G G F C+   +  +G    G     G +  Y++  G              YEG W  + ++GWG++ Y  G    + Y G+W DN RHG G M + + N
Sbjct:  135 GVYTWLDGSTYEGEVTNGLRNGFGMFKCSTQPVSYIGHWCHGRRHGKGSI--YYNQEGTS-----------WYEGDWVYNIKKGWGIRCYKSG----NIYEGQWEDNMRHGEGRMRWLTTN 238
[Close]
BLAST of mRNA_H-paniculata_contig29752.8079.1 vs. uniprot
Match: UPI00148FD204 (radial spoke head 10 homolog B isoform X1 n=2 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148FD204)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-6
Identity = 40/140 (28.57%), Postives = 49/140 (35.00%), Query Frame = 1 
Query:    4 ELVGSGRYTWSNGSSYEGGIFKGLRDGQGTFTCADGTLVGGTIGVPPDSGDLENYFDLNGILNTPTRFVPCQ-----------VIYEGGWKASKRRGWGVQRYGVGTNEVSSYTGEWADNFRHGRGTMSYASGNTYEGQW 390
            +  G G   +  G  Y+G   KGL DG+G FT A G                                               V Y G W   KR G G   Y    ++ S Y G+W +N R G G   Y SGNTY G+W
Sbjct:   37 QFHGDGLACFEGGHMYKGMFSKGLMDGRGVFTQAGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAKNCVSYTGQWDQGKRHGKGEMYYNQ--DKTSWYKGDWVENNREGCGVRCYPSGNTYSGEW 174
[Close]
BLAST of mRNA_H-paniculata_contig29752.8079.1 vs. uniprot
Match: A0A7J8IBE6_MOLMO (Radial spoke head 10-like protein B n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8IBE6_MOLMO)

HSP 1 Score: 50.8 bits (120), Expect = 9.530e-5
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:   19 GRYTWSNGSSYEGGIFKGLRDGQGTFTCADGTL--VGGTI-GVPPDSGDLENYFDLNGILNTPTRFVPCQVIYEGGWKASKRRGWGVQRYGVG 288
            G YTW +GS+YEG +  G+R+G G F C+   +  +G    G     G +  Y++  G          C   YEG W  + ++GWG++RY  G
Sbjct:   63 GTYTWPDGSTYEGEVISGMRNGFGVFQCSTQPVSYIGHWCQGKRHGKGSI--YYNREG--------TSC---YEGDWVHNTKKGWGIRRYKSG 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29752.8079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
L5L122_PTEAL4.900e-933.88Radial spoke head 10 like protein B2 n=1 Tax=Ptero... [more]
UPI00148FD2041.350e-628.57radial spoke head 10 homolog B isoform X1 n=2 Tax=... [more]
A0A7J8IBE6_MOLMO9.530e-533.33Radial spoke head 10-like protein B n=1 Tax=Moloss... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29752contigH-paniculata_contig29752:2114..2829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.507459-CDS-H-paniculata_contig29752:2113..23351622929907.507459-CDS-H-paniculata_contig29752:2113..2335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29752 2114..2335 +
1691481064.4544969-CDS-H-paniculata_contig29752:2113..23351691481064.4544969-CDS-H-paniculata_contig29752:2113..2335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29752 2114..2335 +
1622929907.5292466-CDS-H-paniculata_contig29752:2661..28291622929907.5292466-CDS-H-paniculata_contig29752:2661..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29752 2662..2829 +
1691481064.4649248-CDS-H-paniculata_contig29752:2661..28291691481064.4649248-CDS-H-paniculata_contig29752:2661..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29752 2662..2829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29752.8079.1prot_H-paniculata_contig29752.8079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29752 2114..2829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29752.8079.1

>prot_H-paniculata_contig29752.8079.1 ID=prot_H-paniculata_contig29752.8079.1|Name=mRNA_H-paniculata_contig29752.8079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
NELVGSGRYTWSNGSSYEGGIFKGLRDGQGTFTCADGTLVGGTIGVPPDS
GDLENYFDLNGILNTPTRFVPCQVIYEGGWKASKRRGWGVQRYGVGTNEV
SSYTGEWADNFRHGRGTMSYASGNTYEGQW
back to top

mRNA from alignment at H-paniculata_contig29752:2114..2829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29752.8079.1 ID=mRNA_H-paniculata_contig29752.8079.1|Name=mRNA_H-paniculata_contig29752.8079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at H-paniculata_contig29752:2114..2829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAACTCGTCGGTTCTGGCCGATACACATGGAGTAACGGAAGTTCATA
TGAAGGAGGGATCTTCAAGGGGTTACGCGACGGGCAGGGCACATTTACGT
GTGCGGATGGAACACTGGTAGGTGGCACAATTGGAGTTCCCCCAGACAGC
GGGGATCTTGAAAATTATTTTGATCTCAATGGGATTTTGAACACACCAAC
CCGATTTGTTCCGTGTCAGGTTGTTTAAACATCTACCAGTACGGACAAAG
CCATGTTCATAGGTCGGAACGATCGGAGAATAGTGCCGCAACTGAGTATA
GTCGTTTTCTGAGGCTCGCCTTTCCGTTGAAAGGGCGCATCAGTTTTCAT
GACAGCTCGACTGGGGCTCGGCACGTCGGTTGGTTGACCGCGGGCTCGTC
GTCGAATTAAGTAGAATCGCTCAGCCTTTTACTGCGTTCATAGAACGTAG
ATACATTACGCTGGGAGGTAGACTGTGAGTGAACCGGTCGCAATCGTCGC
ATTCTGATGGCCTTGCACCAACGCCCCTCGATTTTTCGTGAAACCAAGAT
TTACGAGGGTGGCTGGAAGGCAAGCAAGCGGCGCGGATGGGGGGTGCAGC
GATATGGGGTAGGCACGAACGAGGTCTCATCCTACACCGGGGAATGGGCA
GACAATTTCCGTCACGGCCGAGGGACAATGTCTTATGCATCGGGGAATAC
GTACGAGGGACAATGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig29752:2114..2829+

>mRNA_H-paniculata_contig29752.8079.1 ID=mRNA_H-paniculata_contig29752.8079.1|Name=mRNA_H-paniculata_contig29752.8079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig29752:2114..2829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAACTCGTCGGTTCTGGCCGATACACATGGAGTAACGGAAGTTCATA
TGAAGGAGGGATCTTCAAGGGGTTACGCGACGGGCAGGGCACATTTACGT
GTGCGGATGGAACACTGGTAGGTGGCACAATTGGAGTTCCCCCAGACAGC
GGGGATCTTGAAAATTATTTTGATCTCAATGGGATTTTGAACACACCAAC
CCGATTTGTTCCGTGTCAGGTTAATGAACTCGTCGGTTCTGGCCGATACA
CATGGAGTAACGGAAGTTCATATGAAGGAGGGATCTTCAAGGGGTTACGC
GACGGGCAGGGCACATTTACGTGTGCGGATGGAACACTGGTAGGTGGCAC
AATTGGAGTTCCCCCAGACAGCGGGGATCTTGAAAATTATTTTGATCTCA
ATGGGATTTTGAACACACCAACCCGATTTGTTCCGTGTCAGGTTATTTAC
GAGGGTGGCTGGAAGGCAAGCAAGCGGCGCGGATGGGGGGTGCAGCGATA
TGGGGTAGGCACGAACGAGGTCTCATCCTACACCGGGGAATGGGCAGACA
ATTTCCGTCACGGCCGAGGGACAATGTCTTATGCATCGGGGAATACGTAC
GAGGGACAATGGATTTACGAGGGTGGCTGGAAGGCAAGCAAGCGGCGCGG
ATGGGGGGTGCAGCGATATGGGGTAGGCACGAACGAGGTCTCATCCTACA
CCGGGGAATGGGCAGACAATTTCCGTCACGGCCGAGGGACAATGTCTTAT
GCATCGGGGAATACGTACGAGGGACAATGG
back to top