mRNA_H-paniculata_contig2973.8075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2973.8075.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.900e-38 Identity = 301/1119 (26.90%), Postives = 405/1119 (36.19%), Query Frame = 1
Query: 1 CVVACQVMLDLDTGRFPLQLMWALPDVKFEDGFVLAEIHDYRALRSDAHDPAVATTVSP--SDTTCVKGMHHPIGLGQGPGQGARYANGYS--------------------------------VSTESVGGGISGAAGDGDRLMEVNGLNAGGDGE------------------------------------------------------------------------VVSPGML------------------------------PPPGTVTLVKPRIRRQRLKVNRSALMARVRSEVLEASQTQWLQHQXXXXXXXXXXXKSDKINSKETATRDGKSNTVATGITAASSTNSSTSGGIGGTKS----------------------GGKKIGK---ASKNGKPLKGKAAAAATALFSSNLFS--NDQDATGSSQAMAAGLNTGSTGSKRYPGGVSDSGRRNAGDGQEVTGGRGFASPVAVAEALFARGSVESGVRAALDGEAMALKALVPASDLCLNPSTNVSRLINLVRAKCSERSE-------TGFRFSKRHYRILETLALPGEEEAPDEEEFFLGYGAKKLGKSAKRKLVESQAELSAGFRLPSASTPTXXXXXXXXXXXXXXXAPTTPNSCDLKQKFDITATAVSTPSPRSSKKGSTSKEKDNKKMPLGSSGPPTKAFFPSTTEASSKFPKALSSSSSAAAPKTKLSIRLPVPPQSKNATPGGGFVTTP--SSEPRKQGXXXXXXXXXXXXXXXXXVKREMATDKAKVKGNASGTATSRESGXXXXXXXGSSGRGSVKKSGNXXXXXXXXXXXXXXKSIV---AKKTVDISRGGAKQGDRFDGLVSSAGGAKRYRDGTSLAGRGEQGSVMGWQQPRPMNNATATGTATAAIGSKHSARGGGAGIEVHPKKRKPAS-----------------------------AVAPGRSPNADEIRLAFDMIHRVLVAPVTHVSPANGGLLHSPVKFAKFAKVAQKQAKEIEGSNRVLQGQELTRAGTGPQGASDRVYNYGRGSLMATEAQLRSGVTAASLAEEQLAEENLRR----QQQKTGKKRQRHDEADAQVIMTHPDVMMPSRLVGTPRCRDEGALPR 2733
C + Q+MLDLD GRFPL LMWALP+V E G V+AEIHD R DA +P+V TT+ + C KG HHP GLGQGPGQG R+A+ S V G+ +L + N G DG ++SPG + PPPG+VTLVKPR++R RLKV+R MA V V+EA++ + S + A + AA+ + T G GT+ GGK IG A+ GK KGK AAA +S L + Q G++ A A + +V GG +SP A A+A+F RG AL EA+ L+ALVP++++CL PS +VSRL +VR + + R++ FRF + HYR+LETLALPG E+APDEE+FFLG GAK+LGKS KR +A S G + G T+ + P G + P +T EAS+ A +++ SI AT G G +T S XX V + +R S+ G K XXXXXXXXXXXXXK +V K ++ S G K G K D + +Q R + + +A +T A ++ G G+ VHP + P + +E +AF +HR L++PVTH+SPANGG H P F KFAK A ++AK I+ +N QEL R A+ GR ++ ATE +LR G+ A LA EQ QQ R+ HD DA+ I T PD M+ R+ D+ LPR
Sbjct: 196 CFASRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIHDLRGNALDAGNPSVGTTLLQPFGEGICPKGTHHPPGLGQGPGQGERFASDGSYIASGANTXXXXXXXXXXXXSNSCAADGAADAVDVVDARDSSEGSVHQPQQLGRSDSPNRGQDGSSDRSSDRRLTIIVPGDKAGLRPXXXXXXXXXXXXXXXXLFPEKKSPKSVSAVFSAASIATSAPKRSPTPPLLLLSPGSVEEKPGVGVGLDDSAADGDAGEPSPVRVAPPPPPGSVTLVKPRVKRVRLKVSRGVWMASVWEAVVEAAR---------------------RAESAKGA------------VAAAAHGDGGTHGEDEGTRXXXXXXXXXXXXXXXXKRPKAVVGGKTIGVKHLAAGGGKQPKGKTVAAAAXXAASPLADKLSGQGNDGNNPWAAC----------------------TAKEDAKVAGGVAESSPAAAAQAIFGRGPATD---VALGAEALILQALVPSTEICLEPSVDVSRLATMVRGEGTARADGEGGGGNLTFRFERHHYRLLETLALPGVEDAPDEEQFFLGLGAKRLGKSTKRSATGDRAAKSPGAG--------------------------------------------------GGRSGVTNYPDET--HPNGHTSNPNGMMRMNTPEASASSGDGGWGGGLGLADRSQSSIA---------ATGGVGATSTAVVGSXXXXXXRRMKGXXSVLLGAPRQQVSQGGLEXXXXXXXXXXXXXXARSGVRSAAEMAVSAVLGWEKGLNAAXXXXXXXXXXXXXKKVVPLPTSKALNNSVGTDKSG-------------KERSDEAKRRAKKQQAKEGPGHPKRMIADGSAAALSTKA--AEALINDGMKGLAVHPTPQAPREDXXXXXXXXXXXXXXXXXXXXXXXXXXRKTSVKSKKRLEEERAVAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDSNQTGRLTVAATEERLRRGLQPAHLAGEQXXXXXXXXXXXXQQDSLVAGREVHD-GDAKAIKTSPDAMITLRVSTASPSNDQ--LPR 1177
BLAST of mRNA_H-paniculata_contig2973.8075.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE) HSP 1 Score: 130 bits (327), Expect = 3.210e-26 Identity = 160/555 (28.83%), Postives = 209/555 (37.66%), Query Frame = 1
Query: 1 CVVACQVMLDLDTGRFPLQLMWALPDVKFEDGFVLAEIHDYRALRSDAHDPAVATTVSP--SDTTCVKGMHHPIGLGQGPGQGARYANGYSVSTESV-------------GGGISGAAGDGDRLMEVNGLNA-------------------GGDGE-----------------------------------------------------------------------VVSPGML------------------------------PPPGTVTLVKPRIRRQRLKVNRSALMARVRSEVLEASQTQWLQHQXXXXXXXXXXXKSDKINSKETATR------------DGKSNTVATGITAASSTNSSTSGGIGGTKSGGKKIGK---ASKNGKPLKGKAAAAATALFSSNL---FSNDQDATGSSQAMAAGLNTGSTGSKRYPGGVSDSGRRNAGDGQEVTGGRGFASPVAVAEALFARGSVESGVRAALDGEAMALKALVPASDLCLNPSTNVSRLINLVRAKCSERSETGFRFSKRHYRILETLALPGEEEAPDE 1206
C + Q+MLDLD GRFPL LMWALP+V E G V+AEIHD R DA +P+V TT+ + C KG HHP GLGQGPGQG R+A+ S T G A G D V+ N+ G DG ++SPG + PPPG+VTLVKPR++R RLKV+R MA V V+EA++ + + D + K +GK + GGK IG A+ GK GK AA +S L S + + A + G + GGV +S +P A A+A+F RG AL EA+ L+ALVP++DLCL PS +VSRL +VR + + T FRF +RHYR+LETLALPG E+AP +
Sbjct: 351 CFSSRQIMLDLDNGRFPLALMWALPEVMQEAGTVIAEIHDLRGNALDAGNPSVGTTLLQPFGEGICPKGTHHPPGLGQGPGQGERFASDGSYITSGANTAAXXXXXXXXSGSNSCAANGTADAADVVDARNSSEGSVHQPQQLGRGDSPNRGQDGSSDRSSDRRLTIIVPGDKVGLRPLPQPPLQTTPGSGHHLFPEKKSPKSVSAVFSAASIATSAPIRSPTPPLLLLSPGSVEEKPGVGSGLGYSAADGDAGELSSVRVAPRPPPGSVTLVKPRVKRVRLKVSRGVWMASVWESVVEAAR----RAESAKGAAAAAARGDDGTHGKXXXXXXXXXXXXXXXXXNGKGKRPKAVV-------------------GGKTIGVKHLAAGGGKQPTGKTVAAXXXXXASPLADKLSGQGNNGNNPWATCTAIEDG-----KVAGGVVES------------------TPAAAAQAIFGRGPATD---VALGAEALILQALVPSTDLCLEPSVDVSRLAAMVRGEGGGGNLT-FRFERRHYRLLETLALPGVEDAPSQ 855 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2973.8075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2973.8075.1 >prot_H-paniculata_contig2973.8075.1 ID=prot_H-paniculata_contig2973.8075.1|Name=mRNA_H-paniculata_contig2973.8075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1427bp MLDLDTGRFPLQLMWALPDVKFEDGFVLAEIHDYRALRSDAHDPAVATTVback to top mRNA from alignment at H-paniculata_contig2973:935..17755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2973.8075.1 ID=mRNA_H-paniculata_contig2973.8075.1|Name=mRNA_H-paniculata_contig2973.8075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16821bp|location=Sequence derived from alignment at H-paniculata_contig2973:935..17755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2973:935..17755+ >mRNA_H-paniculata_contig2973.8075.1 ID=mRNA_H-paniculata_contig2973.8075.1|Name=mRNA_H-paniculata_contig2973.8075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8562bp|location=Sequence derived from alignment at H-paniculata_contig2973:935..17755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |