mRNA_H-paniculata_contig2969.8068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2969.8068.1
Unique NamemRNA_H-paniculata_contig2969.8068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 7.440e-125
Identity = 191/241 (79.25%), Postives = 205/241 (85.06%), Query Frame = 3 
Query:   90 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKHIDGDGGG-------SRGVKRKA 791
            MEFPGA EDPE  SFIDPVWLQQWGLGP+NALDYFALSPFYDK+CNNEQCRMQ VDPREGL NLTGLEFML +LP EMSFL PGQP P GPQPRRLFVIKKQ+RKSPSSVEVQAIYYIMEG IYQAPTVQKLIKSRL+KFTHHLNNAFVELSKLA+L  SGGGYDWAWQKEAK LQE AE+A          V+EED++  +ALKLS+DNILMGLVEK+IDGDG G       +RG KRKA
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVG------VAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKA 235
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 2.270e-89
Identity = 134/150 (89.33%), Postives = 139/150 (92.67%), Query Frame = 3 
Query:   90 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVE 539
            M+FPGA EDPE  SFIDPVWLQQWGLGPENALDYFALSPFYDK+CNNEQCRMQGVDPREGL NLTGLEFML +LP EMSFL PGQP P GPQPRRLFVIKKQ+RKSPSSVEVQAIYYIMEG IYQAPTVQKLIKSRL+KFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.680e-44
Identity = 105/221 (47.51%), Postives = 135/221 (61.09%), Query Frame = 3 
Query:  111 EDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGV-DPREGLKNLTGLEFMLEDLPQEMSFLA-PGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKHIDGDGGG 767
            ED   +SF D +WL+ + LGPE A+DYFALSPFYD++ NNE CRMQG+ D    ++ +TG+E+++E+LP E   L  PG P    PQPR L VIKKQ RKS +  EV+ +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L   NA G  YDW W  EA          XXXXXXXXX    + Q   SA++   D IL+ LV ++   +G G
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHNARGA-YDWPWNAEAXXXX-----XXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 125 bits (314), Expect = 1.730e-29
Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 3 
Query:  114 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 746
            D    SF D VWLQ + L P+  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  LP     L           P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    8 DDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL--LPNAAKQL-----------PQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSAR-----VDSILIQLMKKH 199
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.410e-28
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 3 
Query:  126 ISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSF-LAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEA-KALQEAAESA 635
            +SF+D  W++ +GL   N LDYFA SPFYD SCNNE  RMQ +          GLE ML D+P  + + L P    PV      LF++ KQ R S + V  QA+YYI++  IYQAP++Q+LI +RL K T+HL NAF ++ K A   A   G+ W +  +A +A +++AE A
Sbjct:   64 VSFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARY-APSQGFTWHFDGDAHRAWRQSAEGA 217
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 120 bits (302), Expect = 6.150e-28
Identity = 77/216 (35.65%), Postives = 115/216 (53.24%), Query Frame = 3 
Query:  114 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 746
            D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L              P      P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL-------------LPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSAR-----VDSILIQLMKKH 199
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A8K1CUM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUM6_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 2.280e-27
Identity = 77/214 (35.98%), Postives = 116/214 (54.21%), Query Frame = 3 
Query:  114 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEA-KALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 746
            D    SF D +WLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+ L  LP     L           P++LF+I+KQ R   + V+  A+YY+++G +YQAP +  ++ SRL K +H +N AF  L+     + + G Y W +  E  KA    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    8 DDYNASFHDTIWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEL--LPNAAKQL-----------PQQLFLIQKQRRLGRTQVKPLAVYYVLDGRVYQAPNIHAMLTSRLKKCSHRVNKAFHALAAGVRFSPTEG-YAWDFSSEDNKAPVIPSEQLQLKLKQKFEKMEKQRENSAR-----VDSILIRLMKKH 199
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 115 bits (288), Expect = 1.120e-26
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 3 
Query:  114 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDW 587
            D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ +   E LKNL G+E+ L  LP     L           P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 117 bits (293), Expect = 1.820e-26
Identity = 75/216 (34.72%), Postives = 117/216 (54.17%), Query Frame = 3 
Query:  114 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 746
            D    SF D +WLQ + L  +  + YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+  E LP     L           P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ ++ A      VD+IL+ L++KH
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEY--EVLPNTAKQL-----------PQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSAR-----VDSILIQLMKKH 199
[Close]
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 113 bits (283), Expect = 3.470e-26
Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 3 
Query:   90 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELS 545
            ME  G  +D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  LP     L           P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE7.440e-12579.25Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI2.270e-8989.33Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA2.680e-4447.51Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE1.730e-2937.04Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA1.410e-2843.60Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT6.150e-2835.65Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CUM6_PYTOL2.280e-2735.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EGT8_BRELC1.120e-2640.51Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD1.820e-2634.72Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL3.470e-2642.86Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2969contigH-paniculata_contig2969:4629..8836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue5.2e-73
Seed eggNOG ortholog2880.D7G6X0
Preferred nameMED6
KEGG koko:K01530,ko:K15128
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
EggNOG OGsCOG5097@1,KOG3169@2759
EC3.6.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons5
Model size1366
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.8802688-UTR-H-paniculata_contig2969:4628..47171622929905.8802688-UTR-H-paniculata_contig2969:4628..4717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 4629..4717 +
1691481063.5667083-UTR-H-paniculata_contig2969:4628..47171691481063.5667083-UTR-H-paniculata_contig2969:4628..4717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 4629..4717 +
1622929905.9807568-UTR-H-paniculata_contig2969:8372..88361622929905.9807568-UTR-H-paniculata_contig2969:8372..8836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 8373..8836 +
1691481063.633636-UTR-H-paniculata_contig2969:8372..88361691481063.633636-UTR-H-paniculata_contig2969:8372..8836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 8373..8836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.894828-CDS-H-paniculata_contig2969:4717..49201622929905.894828-CDS-H-paniculata_contig2969:4717..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 4718..4920 +
1691481063.5816464-CDS-H-paniculata_contig2969:4717..49201691481063.5816464-CDS-H-paniculata_contig2969:4717..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 4718..4920 +
1622929905.9093475-CDS-H-paniculata_contig2969:5336..54331622929905.9093475-CDS-H-paniculata_contig2969:5336..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 5337..5433 +
1691481063.5897405-CDS-H-paniculata_contig2969:5336..54331691481063.5897405-CDS-H-paniculata_contig2969:5336..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 5337..5433 +
1622929905.9260883-CDS-H-paniculata_contig2969:5907..60521622929905.9260883-CDS-H-paniculata_contig2969:5907..6052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 5908..6052 +
1691481063.6003675-CDS-H-paniculata_contig2969:5907..60521691481063.6003675-CDS-H-paniculata_contig2969:5907..6052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 5908..6052 +
1622929905.9485836-CDS-H-paniculata_contig2969:6682..68761622929905.9485836-CDS-H-paniculata_contig2969:6682..6876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 6683..6876 +
1691481063.6089194-CDS-H-paniculata_contig2969:6682..68761691481063.6089194-CDS-H-paniculata_contig2969:6682..6876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 6683..6876 +
1622929905.9674447-CDS-H-paniculata_contig2969:8198..83721622929905.9674447-CDS-H-paniculata_contig2969:8198..8372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 8199..8372 +
1691481063.6179898-CDS-H-paniculata_contig2969:8198..83721691481063.6179898-CDS-H-paniculata_contig2969:8198..8372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 8199..8372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2969.8068.1prot_H-paniculata_contig2969.8068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2969 4718..8372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2969.8068.1

>prot_H-paniculata_contig2969.8068.1 ID=prot_H-paniculata_contig2969.8068.1|Name=mRNA_H-paniculata_contig2969.8068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQC
RMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIK
KQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVE
LSKLAELNASGGGYDWAWQKEAKALQEAAESAAAVGGGAGGVVSEEDQNI
ASALKLSVDNILMGLVEKHIDGDGGGSRGVKRKAATPPSTTARAGGAVSA
ASDVPVANNVASGIPVPGTR*
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mRNA from alignment at H-paniculata_contig2969:4629..8836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2969.8068.1 ID=mRNA_H-paniculata_contig2969.8068.1|Name=mRNA_H-paniculata_contig2969.8068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4208bp|location=Sequence derived from alignment at H-paniculata_contig2969:4629..8836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTGTGTCAGGATAGCAGAATGCACCAATTGTGCTTGTCTTGTCTCAA
GCAAGTGTCTGGTCTCATACTCCTGCGTAACTCGTCACCATGGAGTTCCC
TGGTGCTCCGGAGGATCCAGAAACAATATCCTTCATAGATCCGGTCTGGC
TGCAGCAGTGGGGACTGGGACCAGAAAACGCGCTGGACTACTTTGCACTC
AGCCCGTTCTACGATAAAAGCTGTAACAACGAGCAATGCAGGATGCAGGG
CGTAGATCCAAGGGAAGGACTGAAGAACCTCACCGGCCTGGAGTGAGTGC
AGATTGCTTTCGAATGGGATGGTGGATTAAGTTTTTCTTGAGGAGTCGAT
TCTGGCCTTGTGGGTAACCTCTCTTGCTTATCCCGTTTGAACGTTGGAAC
GATGATGTGTAACCCACCTTATCACCAGTTGCAATGACAGAACACAAACA
GCATACAAATTGTCCGCACGATGCCACCAGCTGGCAGCCCATTGTTGGTA
ATCTGTACCCCGACTCTATTGCAATGTTTGTGGGTCGAGGTCCACCTGCC
CTGTAGAACTTTGTCGTTGGCATATCGCTTACACAGCCGCTGCACCAGCT
CTCGGTCACTACATGGCCATATGAAGTTGGCCGGGCCTCGCTCCCACTCA
AAGCTTCCGTTCTCCAATCAACTACTGTCTGTTGCGTATCTTTTTGGTAT
GTCGGCAGGTTCATGCTCGAAGACCTCCCCCAAGAGATGTCGTTCTTGGC
TCCAGGCCAACCCACCCCAGTGGGACCACAGCCTCGACGGCTTTTTGTCA
TCAAGGTGTGGAAATCTTGCCTCATAACCACACCACTAGTAAATTCATTA
GTAGTCATAAGTATGTACGACTTGACTGTATGACTATCTGTGCTGTCTGT
AGCTCATGAAGCACAGCGGAAATAGACCCTCGCCAGTGATCGGCAGCAGG
ATACAGACAGCTTTGAGCGTCGCCAAGAAGATATTTCCTTCGAGCTTGTG
AAGGTTTGAGGTGTACATAGCTTTCTCGGGAAATCGTTGTTTTGATCGCG
CTTCCAGTGTGTGACGTGACCTTGCTTATGTTGAATCGCTTAACACATAT
CTGTCATGTAACAACTAATTCGAAGGTTTCCTTTGGGTCAATACTGTTGT
TGAGAGCGTACTTGATTGCCAAATTTGGAGTATGTCGGGACCCCCCTAGG
GTTTCAAGCAACCGTAGTAATGTGCCTCACATTGACGTCTGTGTTTCTGC
TGTGCTTGTGTTCACGTGTGGTCTGGCAGAAGCAGATGAGGAAGAGTCCA
TCATCTGTCGAAGTGCAGGCCATCTACTACATCATGGAGGGAAACATCTA
CCAAGCTCCCACGGTTCAGAAGCTGATCAAGTCCCGACTGGACAAATTCA
CCCACCATCTCAACAACGCCTTCGGTGAGATCTGAAACTTCCTGTTTGGA
CCTTGCAGGTCGGAGAGATGCCCATGGGGCGAAGTTCGTTTTCTAGTGAG
ACTATTCGATGTTCTTTGCCGTAGTAAGCTGGCACGGCTTCCCCCTTAGA
TTATCCTCCCCGGAGTCTAGGCGTGCGCTGGAAACAAGATATTCCTTTGT
TTTATTATTTATGAATCTCATTTTGCGCTCTCTGGTAATAACCTCTACTG
CTGTAGTGATCCATCTACCGAACCCACGGGCTAGATACCTTGGTTTGATC
GGTTGAATAATGGAAATGAGCTAGGTAATGCTCTCCTTCATCGATCTATA
AATCTATGGAACAACATCTCCCGAATATGCAAAGACTCGGACGTCTCGAT
CGTTCCTTGACTGTTATGTTGAAGATATTCCTCGCATAATTCTGGAAATA
TTCCACTTGCGAAATGTAACGGCACGCGGCGAGATTTTTACTGTATTTCG
GGTGCTTGCTACATTTGATGCACATACTGTAGACTGATTACAACAACGTG
AGTATTTGTAATTCTTCGTGTGAGCGCTGTCAATTTATTGGTTCCATAAT
TCTTGCCACTGGCGTTGCATTTGCTCGGCGTCGTATCTGGTTACCACAAT
AAAGTCGAGTTGTCTAAGCTGGCGGAGTTGAACGCCTCGGGTGGGGGCTA
CGACTGGGCATGGCAAAAGGAGGCGAAAGCCCTTCAAGAGGCGGCGGAAA
GCGCAGCAGCGGTGGGAGGTGGTGCAGGTGGCGTGGTGAGCGAGGAGGAC
CAAAACATCGCGTCTGCGCTTAAGCTATCGGTGGACAACATACTTATGGT
GAGTGGTCGCGGTTTCTTTCTGTTCTCGCGACCCATGTTATGCTGTGCCC
TGTGCTCTAGATATTTCAAGCCTATGCCTCGATTTAGATTGTAGATTGTA
TGACCGTTTCCCGATTTTAGATGTCGCGTCCTTTTCTGCCGTAGTTAATT
TCTTGCTCGTCTGCAAGAGGGTTCGCAAATGTCAGAATATACAGTAGCTG
ATGCGAAGCGTTGAGCGAAAATGCGAATCGATGTGTGTACTTAGTTGAGA
GTAAGCCGATGTTTGGAGGAACCAAGGATAAGCATGCGATCTGTTTCTCG
ATCTACTGTGTAAATGGTGCCTGTTTTGCTCAACAGCCACGCCGAAAAGA
CAAAATAATCGCAATACTAACAGAGATACGAATCTGTCGTATGCGAGGCA
TCGTTTGTTCCCATGAACTACCAATCTGGTTCGTATCCCCGCTAAGACCA
GTATTGAACAATATTGAGCAGCGCCGAGACGGTGGTACCTTTCTAGGGCA
AAAAGAAGCTGCGTAGAACCGAGGGGAGACCGACGTGATCATTAACCTGA
GTTCTTCGGGGATCTAAATCGGGGCTTTGTACTTGATACTTTGTTGTGGG
ATTAAGCTTCTTCCCTTACAGCACTTTCGAAAGGGTACGATTGACATTGT
GTACCTCCGGGGTGGAAAGAAAGAAAGAAAAAAGAAGCTGCGCCTTGTTT
ATTGTGCATGCAAAAACATGCAAAACGCGAATCGCCAGAAGCAATAGGGA
AGCCATCCTTTCGAGAATGCGCATGCGAGATGCACTTTGCCCTGATTCGC
CGCTTTTCTGTTTGAGGGACAGCTGTGAAGATGAAGATGTAGAATGGGTG
CATTATCGAAAATTTCGAAAGTATGGACCAAAGGTATTAGCGGATTGCCC
ACTAAATCCAAAAAAGCATTGACTTGTACAGCAAAAAAGTGGTATTTGCA
AATGAAACATCTGGTTGGAAGATGACATACGGAGGGTACACATGTGCGCC
AAACCGTACAATGTACGTCTTGTTCTGTCTCTGTCAATAGTGCCCATTTA
CCTGTTTTATCAATGTAAACCTGTGTGTGGAGAGCACAAAAATCACCCTG
TTGCGTTAAATGGCGTAATTTCGGCAGAATCACACTGAAGATGAAGTATT
GAACGTTCGAAAAATTGGAACGTTTGTTAAACGCTGATTATACTTGGTTA
TTTCGCCGCGTTTCAGCCATCGTGGAATTACCAAGCCTCCCATAACGAGG
AGTTATTCTCTACACTATTTGCGCCATTCGTATTGTCTACTTCTGCTCTT
GCTGTGACTTCCGTGTGCAGGGCCTGGTGGAGAAGCATATCGATGGAGAT
GGCGGTGGTTCGCGAGGCGTGAAGCGGAAGGCCGCTACCCCGCCTTCTAC
AACAGCAAGGGCAGGTGGCGCAGTCTCTGCGGCATCAGATGTTCCAGTTG
CAAATAATGTAGCATCGGGCATCCCTGTTCCAGGAACGCGATGACACCAT
AATCATCTTCATCCTGGCCAGAACGCGCTGTTTTTACTGATTTCACATGT
GGACAGAGAGTAGCCCAAAAGAAGAGAATGTGCAGAGTGTGGTGGAAAAT
GACAACTAGGCGATCAACTCCGTTGCATTTCGAAGCTAGATGCACGTGGT
ATAGGCATGGATATCGTGCGTCCCCAGTACATACGTTGTTGTGGATTTTT
ACTTGCCCCGCCTGACTATTGTAGTGTAGTTTTGAATTTTTCAGCATGAG
TGTTGACCGTACTCCATGTTAAGTGTAGGAGGCCGGCCATGTGTTACGTG
TCTTTTGGGCACTTCCAATGCCCATCGCATACTATTTTGTAAACTGTTGT
AAACATACAAATATATCTCGAGCGCCACCCTCGACTTACCATACAAGAGT
GTTGTGCCGTACCTTGACGATGAGACCAGCGTGCTCGGGGGAACTAGCTA
ATCCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2969:4629..8836+

>mRNA_H-paniculata_contig2969.8068.1 ID=mRNA_H-paniculata_contig2969.8068.1|Name=mRNA_H-paniculata_contig2969.8068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig2969:4629..8836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTCCCTGGTGCTCCGGAGGATCCAGAAACAATATCCTTCATAGA
TCCGGTCTGGCTGCAGCAGTGGGGACTGGGACCAGAAAACGCGCTGGACT
ACTTTGCACTCAGCCCGTTCTACGATAAAAGCTGTAACAACGAGCAATGC
AGGATGCAGGGCGTAGATCCAAGGGAAGGACTGAAGAACCTCACCGGCCT
GGAATGGAGTTCCCTGGTGCTCCGGAGGATCCAGAAACAATATCCTTCAT
AGATCCGGTCTGGCTGCAGCAGTGGGGACTGGGACCAGAAAACGCGCTGG
ACTACTTTGCACTCAGCCCGTTCTACGATAAAAGCTGTAACAACGAGCAA
TGCAGGATGCAGGGCGTAGATCCAAGGGAAGGACTGAAGAACCTCACCGG
CCTGGAGTTCATGCTCGAAGACCTCCCCCAAGAGATGTCGTTCTTGGCTC
CAGGCCAACCCACCCCAGTGGGACCACAGCCTCGACGGCTTTTTGTCATC
AAGGTTCATGCTCGAAGACCTCCCCCAAGAGATGTCGTTCTTGGCTCCAG
GCCAACCCACCCCAGTGGGACCACAGCCTCGACGGCTTTTTGTCATCAAG
AAGCAGATGAGGAAGAGTCCATCATCTGTCGAAGTGCAGGCCATCTACTA
CATCATGGAGGGAAACATCTACCAAGCTCCCACGGTTCAGAAGCTGATCA
AGTCCCGACTGGACAAATTCACCCACCATCTCAACAACGCCTTCGAAGCA
GATGAGGAAGAGTCCATCATCTGTCGAAGTGCAGGCCATCTACTACATCA
TGGAGGGAAACATCTACCAAGCTCCCACGGTTCAGAAGCTGATCAAGTCC
CGACTGGACAAATTCACCCACCATCTCAACAACGCCTTCGTCGAGTTGTC
TAAGCTGGCGGAGTTGAACGCCTCGGGTGGGGGCTACGACTGGGCATGGC
AAAAGGAGGCGAAAGCCCTTCAAGAGGCGGCGGAAAGCGCAGCAGCGGTG
GGAGGTGGTGCAGGTGGCGTGGTGAGCGAGGAGGACCAAAACATCGCGTC
TGCGCTTAAGCTATCGGTGGACAACATACTTATGTCGAGTTGTCTAAGCT
GGCGGAGTTGAACGCCTCGGGTGGGGGCTACGACTGGGCATGGCAAAAGG
AGGCGAAAGCCCTTCAAGAGGCGGCGGAAAGCGCAGCAGCGGTGGGAGGT
GGTGCAGGTGGCGTGGTGAGCGAGGAGGACCAAAACATCGCGTCTGCGCT
TAAGCTATCGGTGGACAACATACTTATGGGCCTGGTGGAGAAGCATATCG
ATGGAGATGGCGGTGGTTCGCGAGGCGTGAAGCGGAAGGCCGCTACCCCG
CCTTCTACAACAGCAAGGGCAGGTGGCGCAGTCTCTGCGGCATCAGATGT
TCCAGTTGCAAATAATGTAGCATCGGGCATCCCTGTTCCAGGAACGCGAT
GAGGCCTGGTGGAGAAGCATATCGATGGAGATGGCGGTGGTTCGCGAGGC
GTGAAGCGGAAGGCCGCTACCCCGCCTTCTACAACAGCAAGGGCAGGTGG
CGCAGTCTCTGCGGCATCAGATGTTCCAGTTGCAAATAATGTAGCATCGG
GCATCCCTGTTCCAGGAACGCGATGA
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