prot_H-paniculata_contig2968.8066.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2968.8066.1
Unique Nameprot_H-paniculata_contig2968.8066.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length451
Homology
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BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.350e-54
Identity = 127/262 (48.47%), Postives = 164/262 (62.60%), Query Frame = 0 
Query:  154 SEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTDIRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSPPPKAESAEEGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALRSGVPIGES--FSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQLSTGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRVCGAAGKWRVVTEV 413
            S +L+ VV+QL+GE++AGS PQ+RS + LD LFA+L  +     G   R    T T G   P T  P                   KSP  +       ++ +G G   +  T  DLESLSDML R+Q+SA+ARDLAEA AR+ ALRSG PIG+    S +      +++TRF +IREGRV WAVLPL+++A+ AGI LSTGVYNAAI+AY  TPRKY+DALRVL++LR   D  V PD+ SYN AM VC  AG+WR+V E+
Sbjct:  115 SSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRG---RNSTTTTTTG---PNTIPP-------------------KSPKQQRRLPNGKLSAAGSGDAALEGTD-DLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 350
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BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.130e-51
Identity = 129/264 (48.86%), Postives = 168/264 (63.64%), Query Frame = 0 
Query:  154 SEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTDIRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSP--PPKAESAEEGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALRSGVPIGE--SFSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQLSTGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRVCGAAGKWRVVTEV 413
            S +L+ VV+QL+GE++AG+ PQ+RS + LD LFA+L  +   + G    R ++T T  G  P T  P                   KSP  P +  S +   AGS   GD       DLESLS+ML R+Q+SA+ARDLAEA AR+  LRSG PIG+  + S +      +M+TRF +IREGRV WAVLPL+++A+ AGI LSTGVYNAAI+AY  TPRKY+DALRVL++LR   D  V PD+ SYN AM VC  AG+WR+V E+
Sbjct:   65 SSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRG----RNSKTPTTTG--PKTIPP-------------------KSPKQPRRLPSGKFCAAGS---GDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L472_9PHAE6.350e-5448.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FLV0_ECTSI2.130e-5148.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 308..435
e-value: 5.1E-8
score: 34.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..450
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.725

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2968contigH-paniculata_contig2968:11701..13053 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2968.8066.1mRNA_H-paniculata_contig2968.8066.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2968 11669..13168 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2968.8066.1 ID=prot_H-paniculata_contig2968.8066.1|Name=mRNA_H-paniculata_contig2968.8066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp
MRLAPATLLLLYVLSVAPQPALPFTSITLCPPFNNRSHCVISRRIYHGPR
SSGSGSGTSSSGTSSSGTSSSRAPNSPCYGARFTFHLGDVENSKRNPYRR
VRSCSVVVGLVGSKDTGLEHDSGASSNPQSPLATRMTASDSDDHLGELVA
GASSEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTD
IRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSPPPKAESAE
EGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALR
SGVPIGESFSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQL
STGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRV
CGAAGKWRVVTEVSEPACRPRNLPLDKYMLQRKVLRTVKGYRVCRASCSC
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf