mRNA_H-paniculata_contig2968.8066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2968.8066.1
Unique NamemRNA_H-paniculata_contig2968.8066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.050e-53
Identity = 127/262 (48.47%), Postives = 164/262 (62.60%), Query Frame = 3 
Query:  492 SEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTDIRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSPPPKAESAEEGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALRSGVPIGES--FSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQLSTGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRVCGAAGKWRVVTEV 1271
            S +L+ VV+QL+GE++AGS PQ+RS + LD LFA+L  +     G   R    T T G   P T  P                   KSP  +       ++ +G G   +  T  DLESLSDML R+Q+SA+ARDLAEA AR+ ALRSG PIG+    S +      +++TRF +IREGRV WAVLPL+++A+ AGI LSTGVYNAAI+AY  TPRKY+DALRVL++LR   D  V PD+ SYN AM VC  AG+WR+V E+
Sbjct:  115 SSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRG---RNSTTTTTTG---PNTIPP-------------------KSPKQQRRLPNGKLSAAGSGDAALEGTD-DLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 350
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BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 6.830e-51
Identity = 129/264 (48.86%), Postives = 168/264 (63.64%), Query Frame = 3 
Query:  492 SEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTDIRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSP--PPKAESAEEGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALRSGVPIGE--SFSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQLSTGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRVCGAAGKWRVVTEV 1271
            S +L+ VV+QL+GE++AG+ PQ+RS + LD LFA+L  +   + G    R ++T T  G  P T  P                   KSP  P +  S +   AGS   GD       DLESLS+ML R+Q+SA+ARDLAEA AR+  LRSG PIG+  + S +      +M+TRF +IREGRV WAVLPL+++A+ AGI LSTGVYNAAI+AY  TPRKY+DALRVL++LR   D  V PD+ SYN AM VC  AG+WR+V E+
Sbjct:   65 SSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRG----RNSKTPTTTG--PKTIPP-------------------KSPKQPRRLPSGKFCAAGS---GDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2968.8066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L472_9PHAE2.050e-5348.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FLV0_ECTSI6.830e-5148.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2968contigH-paniculata_contig2968:11669..13168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue3.9e-49
Seed eggNOG ortholog2880.D7FLV0
KEGG koko:K17710
Hectar predicted targeting categorychloroplast
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-26_001150.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons1
Model size1500
Cds size1353
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2968.8066.1prot_H-paniculata_contig2968.8066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2968 11701..13053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.5728848-UTR-H-paniculata_contig2968:11668..117001622929905.5728848-UTR-H-paniculata_contig2968:11668..11700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2968 11669..11700 +
1691481063.4762585-UTR-H-paniculata_contig2968:11668..117001691481063.4762585-UTR-H-paniculata_contig2968:11668..11700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2968 11669..11700 +
1622929905.6506321-UTR-H-paniculata_contig2968:13053..131681622929905.6506321-UTR-H-paniculata_contig2968:13053..13168Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2968 13054..13168 +
1691481063.4961543-UTR-H-paniculata_contig2968:13053..131681691481063.4961543-UTR-H-paniculata_contig2968:13053..13168Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2968 13054..13168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.5883126-CDS-H-paniculata_contig2968:11700..130531622929905.5883126-CDS-H-paniculata_contig2968:11700..13053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2968 11701..13053 +
1691481063.4872632-CDS-H-paniculata_contig2968:11700..130531691481063.4872632-CDS-H-paniculata_contig2968:11700..13053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2968 11701..13053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2968.8066.1

>prot_H-paniculata_contig2968.8066.1 ID=prot_H-paniculata_contig2968.8066.1|Name=mRNA_H-paniculata_contig2968.8066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp
MRLAPATLLLLYVLSVAPQPALPFTSITLCPPFNNRSHCVISRRIYHGPR
SSGSGSGTSSSGTSSSGTSSSRAPNSPCYGARFTFHLGDVENSKRNPYRR
VRSCSVVVGLVGSKDTGLEHDSGASSNPQSPLATRMTASDSDDHLGELVA
GASSEKLKRVVAQLRGEIKAGSIPQMRSRVALDDLFAELHDEPTAATGTD
IRRIAQTATAGGHAPGTATPSAAASTFDGAVNDAGSKKGKSPPPKAESAE
EGIAGSGGGGDGISSTGGDLESLSDMLSRLQSSAQARDLAEAGARAAALR
SGVPIGESFSALIASTHNEMRTRFASIREGRVSWAVLPLILRARHAGIQL
STGVYNAAISAYISTPRKYQDALRVLDLLRDSGDTDVLPDISSYNTAMRV
CGAAGKWRVVTEVSEPACRPRNLPLDKYMLQRKVLRTVKGYRVCRASCSC
*
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mRNA from alignment at H-paniculata_contig2968:11669..13168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2968.8066.1 ID=mRNA_H-paniculata_contig2968.8066.1|Name=mRNA_H-paniculata_contig2968.8066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig2968:11669..13168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGTCTACAACGGAGGGCTAACCCTCATGTCATGCGGCTGGCACCGGCC
ACGCTTCTGTTACTCTATGTTTTATCTGTAGCACCCCAACCAGCTTTACC
TTTCACAAGCATCACTTTGTGTCCCCCGTTCAACAACAGATCGCACTGTG
TCATCAGCCGACGCATATATCACGGACCACGCAGCAGCGGCAGCGGCAGC
GGCACCAGCAGCAGCGGCACCAGCAGCAGCGGCACCAGCAGTAGCAGAGC
ACCCAACTCCCCGTGCTACGGTGCCCGCTTCACCTTCCATCTAGGCGATG
TCGAAAACAGCAAAAGAAATCCATACCGAAGAGTTCGCTCCTGTTCTGTA
GTCGTTGGCCTGGTCGGCAGCAAAGACACTGGCCTTGAACACGATAGCGG
AGCATCTAGCAACCCGCAGTCTCCGTTGGCCACCAGGATGACCGCCTCGG
ATTCCGACGACCACCTGGGCGAGCTAGTAGCCGGAGCCAGCTCAGAGAAG
CTCAAGAGGGTGGTGGCGCAGTTGCGGGGGGAAATCAAAGCCGGTTCCAT
CCCCCAGATGCGCTCCCGCGTTGCTCTGGACGATCTGTTCGCGGAGCTCC
ACGACGAGCCGACTGCAGCAACAGGTACAGACATACGTCGAATCGCTCAA
ACTGCAACGGCCGGCGGGCACGCACCGGGTACTGCGACTCCGTCGGCAGC
AGCCAGTACGTTTGACGGCGCAGTGAACGATGCCGGAAGCAAGAAAGGAA
AAAGCCCGCCACCGAAAGCTGAAAGCGCGGAAGAGGGAATAGCCGGCAGC
GGGGGTGGTGGCGACGGCATAAGCAGCACCGGAGGAGACCTGGAATCCCT
GTCGGATATGTTGTCCCGCTTACAATCTAGCGCGCAAGCCAGAGACCTGG
CGGAAGCCGGGGCGCGCGCGGCGGCCCTGCGATCAGGTGTGCCGATCGGC
GAAAGCTTCTCGGCGCTGATCGCGTCGACGCACAACGAAATGCGGACGCG
ATTCGCTTCCATACGGGAGGGTAGGGTGAGCTGGGCCGTGCTGCCTTTGA
TTCTACGGGCGAGGCACGCCGGTATTCAGCTCAGCACTGGCGTATACAAC
GCAGCGATTTCGGCGTACATCAGCACGCCGCGCAAGTACCAAGACGCCTT
GAGGGTGCTGGACCTCTTAAGGGACTCGGGGGATACTGATGTGCTGCCAG
ATATTAGTTCATACAACACGGCCATGCGTGTTTGCGGGGCGGCGGGAAAG
TGGAGGGTGGTGACTGAGGTAAGCGAACCCGCTTGTCGCCCCCGAAATCT
TCCTCTCGACAAGTACATGCTGCAGCGCAAAGTTTTGAGGACGGTCAAGG
GATATCGTGTGTGTCGCGCGTCATGTTCGTGTTGACAGGGACGTGAAATC
GTCACGGTTACAGCATTGTGTGTAGAGAGGGTGACGCTCCAAGGGTTGGT
GGCTCGGATTTTCCGGGTTGAATTGATCGGCATCATGGCAAAAGCTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2968:11669..13168+

>mRNA_H-paniculata_contig2968.8066.1 ID=mRNA_H-paniculata_contig2968.8066.1|Name=mRNA_H-paniculata_contig2968.8066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig2968:11669..13168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCTGGCACCGGCCACGCTTCTGTTACTCTATGTTTTATCTGTAGC
ACCCCAACCAGCTTTACCTTTCACAAGCATCACTTTGTGTCCCCCGTTCA
ACAACAGATCGCACTGTGTCATCAGCCGACGCATATATCACGGACCACGC
AGCAGCGGCAGCGGCAGCGGCACCAGCAGCAGCGGCACCAGCAGCAGCGG
CACCAGCAGTAGCAGAGCACCCAACTCCCCGTGCTACGGTGCCCGCTTCA
CCTTCCATCTAGGCGATGTCGAAAACAGCAAAAGAAATCCATACCGAAGA
GTTCGCTCCTGTTCTGTAGTCGTTGGCCTGGTCGGCAGCAAAGACACTGG
CCTTGAACACGATAGCGGAGCATCTAGCAACCCGCAGTCTCCGTTGGCCA
CCAGGATGACCGCCTCGGATTCCGACGACCACCTGGGCGAGCTAGTAGCC
GGAGCCAGCTCAGAGAAGCTCAAGAGGGTGGTGGCGCAGTTGCGGGGGGA
AATCAAAGCCGGTTCCATCCCCCAGATGCGCTCCCGCGTTGCTCTGGACG
ATCTGTTCGCGGAGCTCCACGACGAGCCGACTGCAGCAACAGGTACAGAC
ATACGTCGAATCGCTCAAACTGCAACGGCCGGCGGGCACGCACCGGGTAC
TGCGACTCCGTCGGCAGCAGCCAGTACGTTTGACGGCGCAGTGAACGATG
CCGGAAGCAAGAAAGGAAAAAGCCCGCCACCGAAAGCTGAAAGCGCGGAA
GAGGGAATAGCCGGCAGCGGGGGTGGTGGCGACGGCATAAGCAGCACCGG
AGGAGACCTGGAATCCCTGTCGGATATGTTGTCCCGCTTACAATCTAGCG
CGCAAGCCAGAGACCTGGCGGAAGCCGGGGCGCGCGCGGCGGCCCTGCGA
TCAGGTGTGCCGATCGGCGAAAGCTTCTCGGCGCTGATCGCGTCGACGCA
CAACGAAATGCGGACGCGATTCGCTTCCATACGGGAGGGTAGGGTGAGCT
GGGCCGTGCTGCCTTTGATTCTACGGGCGAGGCACGCCGGTATTCAGCTC
AGCACTGGCGTATACAACGCAGCGATTTCGGCGTACATCAGCACGCCGCG
CAAGTACCAAGACGCCTTGAGGGTGCTGGACCTCTTAAGGGACTCGGGGG
ATACTGATGTGCTGCCAGATATTAGTTCATACAACACGGCCATGCGTGTT
TGCGGGGCGGCGGGAAAGTGGAGGGTGGTGACTGAGGTAAGCGAACCCGC
TTGTCGCCCCCGAAATCTTCCTCTCGACAAGTACATGCTGCAGCGCAAAG
TTTTGAGGACGGTCAAGGGATATCGTGTGTGTCGCGCGTCATGTTCGTGT
TGAATGCGGCTGGCACCGGCCACGCTTCTGTTACTCTATGTTTTATCTGT
AGCACCCCAACCAGCTTTACCTTTCACAAGCATCACTTTGTGTCCCCCGT
TCAACAACAGATCGCACTGTGTCATCAGCCGACGCATATATCACGGACCA
CGCAGCAGCGGCAGCGGCAGCGGCACCAGCAGCAGCGGCACCAGCAGCAG
CGGCACCAGCAGTAGCAGAGCACCCAACTCCCCGTGCTACGGTGCCCGCT
TCACCTTCCATCTAGGCGATGTCGAAAACAGCAAAAGAAATCCATACCGA
AGAGTTCGCTCCTGTTCTGTAGTCGTTGGCCTGGTCGGCAGCAAAGACAC
TGGCCTTGAACACGATAGCGGAGCATCTAGCAACCCGCAGTCTCCGTTGG
CCACCAGGATGACCGCCTCGGATTCCGACGACCACCTGGGCGAGCTAGTA
GCCGGAGCCAGCTCAGAGAAGCTCAAGAGGGTGGTGGCGCAGTTGCGGGG
GGAAATCAAAGCCGGTTCCATCCCCCAGATGCGCTCCCGCGTTGCTCTGG
ACGATCTGTTCGCGGAGCTCCACGACGAGCCGACTGCAGCAACAGGTACA
GACATACGTCGAATCGCTCAAACTGCAACGGCCGGCGGGCACGCACCGGG
TACTGCGACTCCGTCGGCAGCAGCCAGTACGTTTGACGGCGCAGTGAACG
ATGCCGGAAGCAAGAAAGGAAAAAGCCCGCCACCGAAAGCTGAAAGCGCG
GAAGAGGGAATAGCCGGCAGCGGGGGTGGTGGCGACGGCATAAGCAGCAC
CGGAGGAGACCTGGAATCCCTGTCGGATATGTTGTCCCGCTTACAATCTA
GCGCGCAAGCCAGAGACCTGGCGGAAGCCGGGGCGCGCGCGGCGGCCCTG
CGATCAGGTGTGCCGATCGGCGAAAGCTTCTCGGCGCTGATCGCGTCGAC
GCACAACGAAATGCGGACGCGATTCGCTTCCATACGGGAGGGTAGGGTGA
GCTGGGCCGTGCTGCCTTTGATTCTACGGGCGAGGCACGCCGGTATTCAG
CTCAGCACTGGCGTATACAACGCAGCGATTTCGGCGTACATCAGCACGCC
GCGCAAGTACCAAGACGCCTTGAGGGTGCTGGACCTCTTAAGGGACTCGG
GGGATACTGATGTGCTGCCAGATATTAGTTCATACAACACGGCCATGCGT
GTTTGCGGGGCGGCGGGAAAGTGGAGGGTGGTGACTGAGGTAAGCGAACC
CGCTTGTCGCCCCCGAAATCTTCCTCTCGACAAGTACATGCTGCAGCGCA
AAGTTTTGAGGACGGTCAAGGGATATCGTGTGTGTCGCGCGTCATGTTCG
TGTTGA
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