mRNA_H-paniculata_contig29670.8063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29670.8063.1
Unique NamemRNA_H-paniculata_contig29670.8063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29670.8063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29670contigH-paniculata_contig29670:737..2537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29670.8063.1prot_H-paniculata_contig29670.8063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29670 737..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.2311516-CDS-H-paniculata_contig29670:736..8031622929905.2311516-CDS-H-paniculata_contig29670:736..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 737..803 +
1691481063.3187988-CDS-H-paniculata_contig29670:736..8031691481063.3187988-CDS-H-paniculata_contig29670:736..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 737..803 +
1622929905.2488112-CDS-H-paniculata_contig29670:1307..14061622929905.2488112-CDS-H-paniculata_contig29670:1307..1406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 1308..1406 +
1691481063.3295977-CDS-H-paniculata_contig29670:1307..14061691481063.3295977-CDS-H-paniculata_contig29670:1307..1406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 1308..1406 +
1622929905.2687767-CDS-H-paniculata_contig29670:2315..23681622929905.2687767-CDS-H-paniculata_contig29670:2315..2368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 2316..2368 +
1691481063.3480003-CDS-H-paniculata_contig29670:2315..23681691481063.3480003-CDS-H-paniculata_contig29670:2315..2368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29670 2316..2368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.2860074-UTR-H-paniculata_contig29670:2368..25371622929905.2860074-UTR-H-paniculata_contig29670:2368..2537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29670 2369..2537 +
1691481063.3569944-UTR-H-paniculata_contig29670:2368..25371691481063.3569944-UTR-H-paniculata_contig29670:2368..2537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29670 2369..2537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29670.8063.1

>prot_H-paniculata_contig29670.8063.1 ID=prot_H-paniculata_contig29670.8063.1|Name=mRNA_H-paniculata_contig29670.8063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
ETPGLDLPRWATHKLFRKTNENSGQRLHDVTSEALWRRFSDCARRCGTSY
TQSTTGTRRNMGCFRQARNMQT*
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mRNA from alignment at H-paniculata_contig29670:737..2537+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29670.8063.1 ID=mRNA_H-paniculata_contig29670.8063.1|Name=mRNA_H-paniculata_contig29670.8063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1801bp|location=Sequence derived from alignment at H-paniculata_contig29670:737..2537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACCCCCGGGCTAGACCTACCTCGCTGGGCGACTCACAAGCTGTTCAG
GAAGACAAATGAAAACAGTAAGTTTACATCTTGTACGTGGTACCTTGAGT
TGTAGTGTATTTGTAGTTTACCTGATTGGAATTACCGTGTTGATATTCAT
GCACGACGAATATAGTTGATGGTATGGAAATACTGTCATTAGTATATGCA
GCGGTACATCATAGGCCGTACACGGACTGCACTTGCGTACCCGTCGATGT
AGAGACATGAACATGCCTATGTCTCTTCCTCATTCAATCGTGCCCGAAAT
GTATCCAATTTATATGTGCACTATCGTGCTTAATGTGATTTGACCCCACT
GGACACGGAAGGGTTAACAATCCTACAGACTGTATATGTGGCACAAAATA
CTTGTCTGTCCGATCCGTCCCTGCCTGCCCTTTCGACAACTTGAAATATA
CAACTAGCGCGGCGCGCATGATACACGAGCAGTGCCGCTCATTGTCTGCC
AGGCGGTCAATTTCATGCCAGCCAGCAGCCTGCCCCTATTAATGCGGCAC
CCTCATTCTTACCCGCTGCAGGTGGGCAGAGACTGCATGACGTGACCTCC
GAAGCACTATGGCGCCGTTTTTCAGACTGTGCGCGGAGGTGCGGAACGTC
ATATACCCAATCTACGACAGGTAAGGCACGCCCGTCCCACACACATTAAA
TAGTTTTTCGGTGTCGGTTTGAAGGAAAAATCCGGGGCTGGGCACAGTAA
AAAAACCATCACCATTTACTGCGCTCGATGGTACGGGAACGATAACCGTT
CGTTACTTTCATATCTTGCTCAGCGTTCACTGTTCCGATATTTGATCGTG
CCTGCGGCTCACCGTCCATAAGCTACCCTAATATTTTCCTTACCGTTTAC
AGTTCCATTAATTACCGTGCTGGCGGCAAACTGTCCATGTGTTGCGGTGC
CAGCACCATGATTCCATACCATGGAAAGTATCTATCGGTACATGTACCAA
TTGCGAGTACGTATCACAAGCGCTCAAAATCCCGTGTCCAGATTGAATGT
AACCTTCAAATTCGAAATGTTGCCCTGATTACATTTTTTTTCTCTTCTTT
TCGGTTCTACCGCTCTCCACAAAAAGTTTTCGTGACTTATTTGATCCAAC
CACTCATTCTGCTGTACCGCCACAACTACACCGCCCCCATTCATTGGCCC
CGCAGATTGTTTTCCCAAATTTCCCCGTGCCGGCGACCAGTATACCGTGT
GTTGCCGTTCAGGCCAACTTTTAGCACTTCATACCGTCAGGCCACGATTT
GCCTTTTCATCACCGTGAAAAATTGCATTCAAAACGCCCCTCCGACCAAG
GTGGTGCTCCGCCCAAGCTTCACCGTGGCATATCTAGTACAATTTGACCG
CATTATTAGTTAACGTCCTTTTCATGGTTTTACCGTTTTAACCCCGTTTT
CGTAATTCGTTACCGTGCCCAGCCCTTGACAACAAGCGGCTGAATACGTG
TACCTCGCGCGGTGCCAGGGACAGAATGCAGTAACCCTTTTGCGCAATAT
TCCGGGTCTCTCTGTTTCCCTCCGGTCAGGTACACGCAGGAACATGGGAT
GCTTCCGTCAGGCACGCAACATGCAGACATGATGGAATACATCCGCTAGA
AGCGGGGACTGAAATGCAGACCACAAGGGGTAAGGCGAGGAAGAATAAGG
GTACAAATGGCAACAAGGACACGACTCCTATTCGGAGGAACATCACGATA
CAAGACGACGGGAACGTGGTACAAGCACCGATGTCGGCAGGAGGGGACAG
C
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Coding sequence (CDS) from alignment at H-paniculata_contig29670:737..2537+

>mRNA_H-paniculata_contig29670.8063.1 ID=mRNA_H-paniculata_contig29670.8063.1|Name=mRNA_H-paniculata_contig29670.8063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig29670:737..2537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACCCCCGGGCTAGACCTACCTCGCTGGGCGACTCACAAGCTGTTCAG
GAAGACAAATGAAAACAGAAACCCCCGGGCTAGACCTACCTCGCTGGGCG
ACTCACAAGCTGTTCAGGAAGACAAATGAAAACAGTGGGCAGAGACTGCA
TGACGTGACCTCCGAAGCACTATGGCGCCGTTTTTCAGACTGTGCGCGGA
GGTGCGGAACGTCATATACCCAATCTACGACAGGTGGGCAGAGACTGCAT
GACGTGACCTCCGAAGCACTATGGCGCCGTTTTTCAGACTGTGCGCGGAG
GTGCGGAACGTCATATACCCAATCTACGACAGGTACACGCAGGAACATGG
GATGCTTCCGTCAGGCACGCAACATGCAGACATGAGTACACGCAGGAACA
TGGGATGCTTCCGTCAGGCACGCAACATGCAGACATGA
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