mRNA_H-paniculata_contig29631.8052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29631.8052.1
Unique NamemRNA_H-paniculata_contig29631.8052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.010e-38
Identity = 63/91 (69.23%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:  151 AAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITLRVRES 423
            AA YEVSP+G+P +LTAAL  AG GDTISL DGIYREP+VT+ AG EGNPLVIEGG DAV++ ++GD+ +MWSQKVVD+RHSW+TLR   +
Sbjct:   51 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANAN 141
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BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: D8LJ28_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ28_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.280e-38
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:   58 TRTTCASNKTVA-ASLRVLTVVIACILPLIAEAAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITL 408
            T ++  +NKT   A+LR+ T  +A  L     AAMYEVSP+G P +LTAAL  AG GD ISLADGIYREPIVT+ AG EGNPLVI GG  A+I+ FSGDR LMWSQKVVD+RHS++TL
Sbjct:    2 TSSSSCTNKTAGGAALRLATAALAA-LATGTNAAMYEVSPDGSPMTLTAALEVAGAGDIISLADGIYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 118
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BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 7.770e-38
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:  151 AAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITLR 411
            AA YEVSP+G+P +LTAAL  AG GDTISL DGIYREP+VT+ AG EGNPLVIEGG DAVI+ ++GD+ +MWSQKVVD+RHSWITLR
Sbjct:   63 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLR 149
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BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.150e-34
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   58 TRTTCASNKTVAASLRVLTVVIACILPLIAEAAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITL 408
            T ++C +     A+LR+ T  +A  L     AAMYEVSP+G P +LTAAL  AG GD +SLADG YREPIVT+ AG EGNPLVI GG  A+I+ FSGDR LMWSQKVVD+RHS++TL
Sbjct:    2 TSSSCTNKTAGVAALRLATAALAA-LATGTNAAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117
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BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.960e-34
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:  151 AAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITLR 411
            AA YEVSP+G+P +L AAL  AG GDTISL DGIYREP+VT+ AG EGNPLVIEGG DAV++ ++GD+ +MWSQKVVD+RHSW+TLR
Sbjct:   78 AATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 164
[Close]
BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Match: A0A6G4WWI2_9ACTN (Sheath polysaccharide-degrading enzyme n=1 Tax=Streptomyces boncukensis TaxID=2711219 RepID=A0A6G4WWI2_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 3.990e-5
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  193 LTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNPLVIEGGPDAVISAFSG 348
            L  AL +A  GDTI LADG+YR    T  AG  G+P+ + G PDAV++A  G
Sbjct:   43 LKDALAQARGGDTIRLADGVYRGNFKTSRAGGAGSPVTLTGSPDAVLTAGGG 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29631.8052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHJ7_ECTSI1.010e-3869.23EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJ28_ECTSI2.280e-3863.56EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KG59_9PHAE7.770e-3874.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1D2_9PHAE4.150e-3460.68Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ42_ECTSI4.960e-3471.26FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6G4WWI2_9ACTN3.990e-550.00Sheath polysaccharide-degrading enzyme n=1 Tax=Str... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29631contigH-paniculata_contig29631:1160..1600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.2279744-CDS-H-paniculata_contig29631:1159..16001622929904.2279744-CDS-H-paniculata_contig29631:1159..1600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29631 1160..1600 +
1691481062.8987424-CDS-H-paniculata_contig29631:1159..16001691481062.8987424-CDS-H-paniculata_contig29631:1159..1600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29631 1160..1600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29631.8052.1prot_H-paniculata_contig29631.8052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29631 1160..1600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29631.8052.1

>prot_H-paniculata_contig29631.8052.1 ID=prot_H-paniculata_contig29631.8052.1|Name=mRNA_H-paniculata_contig29631.8052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MTTATDLRRQQGRQHQQHDTRTTCASNKTVAASLRVLTVVIACILPLIAE
AAMYEVSPEGEPYSLTAALVEAGPGDTISLADGIYREPIVTVVAGEEGNP
LVIEGGPDAVISAFSGDRDLMWSQKVVDVRHSWITLRVRESLCVYQ*
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mRNA from alignment at H-paniculata_contig29631:1160..1600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29631.8052.1 ID=mRNA_H-paniculata_contig29631.8052.1|Name=mRNA_H-paniculata_contig29631.8052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig29631:1160..1600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACTGCGACCGACCTTCGACGCCAGCAGGGACGGCAGCACCAGCA
ACATGATACAAGAACGACCTGTGCGAGCAATAAAACTGTTGCAGCTTCTC
TTCGTGTTCTAACCGTAGTAATCGCCTGCATCCTACCGCTCATAGCCGAG
GCCGCCATGTACGAGGTCTCCCCAGAGGGCGAGCCCTACTCGCTCACCGC
AGCCCTAGTCGAAGCTGGGCCGGGTGACACCATATCTTTGGCAGACGGTA
TTTACCGCGAGCCAATTGTAACGGTGGTCGCGGGTGAGGAAGGGAACCCC
TTGGTAATCGAGGGTGGGCCAGACGCGGTGATCAGTGCTTTCAGCGGAGA
TAGAGACTTGATGTGGTCTCAGAAGGTGGTCGACGTGCGGCATTCATGGA
TCACTCTACGGGTAAGAGAGTCTTTGTGTGTATATCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29631:1160..1600+

>mRNA_H-paniculata_contig29631.8052.1 ID=mRNA_H-paniculata_contig29631.8052.1|Name=mRNA_H-paniculata_contig29631.8052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig29631:1160..1600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACTGCGACCGACCTTCGACGCCAGCAGGGACGGCAGCACCAGCA
ACATGATACAAGAACGACCTGTGCGAGCAATAAAACTGTTGCAGCTTCTC
TTCGTGTTCTAACCGTAGTAATCGCCTGCATCCTACCGCTCATAGCCGAG
GCCGCCATGTACGAGGTCTCCCCAGAGGGCGAGCCCTACTCGCTCACCGC
AGCCCTAGTCGAAGCTGGGCCGGGTGACACCATATCTTTGGCAGACGGTA
TTTACCGCGAGCCAATTGTAACGGTGGTCGCGGGTGAGGAAGGGAACCCC
TTGGTAATCGAGGGTGGGCCAGACGCGGTGATCAGTGCTTTCAGCGGAGA
TAGAGACTTGATGTGGTCTCAGAAGGTGGTCGACGTGCGGCATTCATGGA
TCACTCTACGGGTAAGAGAGTCTTTGTGTGTATATCAATGAATGACAACT
GCGACCGACCTTCGACGCCAGCAGGGACGGCAGCACCAGCAACATGATAC
AAGAACGACCTGTGCGAGCAATAAAACTGTTGCAGCTTCTCTTCGTGTTC
TAACCGTAGTAATCGCCTGCATCCTACCGCTCATAGCCGAGGCCGCCATG
TACGAGGTCTCCCCAGAGGGCGAGCCCTACTCGCTCACCGCAGCCCTAGT
CGAAGCTGGGCCGGGTGACACCATATCTTTGGCAGACGGTATTTACCGCG
AGCCAATTGTAACGGTGGTCGCGGGTGAGGAAGGGAACCCCTTGGTAATC
GAGGGTGGGCCAGACGCGGTGATCAGTGCTTTCAGCGGAGATAGAGACTT
GATGTGGTCTCAGAAGGTGGTCGACGTGCGGCATTCATGGATCACTCTAC
GGGTAAGAGAGTCTTTGTGTGTATATCAATGA
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