mRNA_H-paniculata_contig29623.8050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29623.8050.1
Unique NamemRNA_H-paniculata_contig29623.8050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Match: D8LT50_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT50_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.980e-6
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 PYFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPF 111
            PY APE L RD  Y   VD+WA GVV +E++HG+TPF
Sbjct:  486 PYLAPE-LVRDVPYDAAVDMWAVGVVTYELLHGYTPF 521
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BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.040e-6
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 PYFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPF 111
            PY APE L RD  Y   VD+WA GVV +E++HG+TPF
Sbjct: 1109 PYLAPE-LVRDVPYDAAVDMWAVGVVTYELLHGYTPF 1144
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BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Match: A0A0D9QP21_PLAFR (Serine/threonine protein kinase n=1 Tax=Plasmodium fragile TaxID=5857 RepID=A0A0D9QP21_PLAFR)

HSP 1 Score: 49.3 bits (116), Expect = 3.840e-5
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    1 PYFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPFR--------YVSGCAHDVISYVSLY-LSEHVFGRRTFH 198
            PY APE L R+ EYT K D++A GVV +E++ G  PFR        ++S C H    Y+ +  L E    R+ FH
Sbjct: 1047 PYAAPEVL-REEEYTDKCDIYAFGVVMYEVLFGGLPFRSNYVPYFFWLSTCFHQKYIYIDVNKLHEKFSNRKLFH 1120
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BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Match: A0A0V0Q7I4_PSEPJ (Protein kinase-like domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q7I4_PSEPJ)

HSP 1 Score: 48.9 bits (115), Expect = 5.170e-5
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 PYFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPF--RYVSGCAHDV 141
            P +AP QL ++ EY++K DV++ GVV FE+++G TPF  + + G A D+
Sbjct:  158 PLYAPPQLLKNQEYSSKCDVFSLGVVFFEMLYGTTPFNGQTIQGLAEDI 206
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BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Match: W7TZ18_9STRA (Aurora kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ18_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.750e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    4 YFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPFR 114
            Y APE L R+P Y   VD+W  GV+AFE++HG TPF 
Sbjct:  222 YLAPEVLAREP-YGPSVDLWTAGVMAFELLHGRTPFE 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29623.8050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LT50_ECTSI7.980e-659.46Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JH87_9PHAE8.040e-659.46Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A0D9QP21_PLAFR3.840e-540.00Serine/threonine protein kinase n=1 Tax=Plasmodium... [more]
A0A0V0Q7I4_PSEPJ5.170e-544.90Protein kinase-like domain n=1 Tax=Pseudocohnilemb... [more]
W7TZ18_9STRA9.750e-556.76Aurora kinase n=2 Tax=Monodopsidaceae TaxID=425072... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29623contigH-paniculata_contig29623:501..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.1093812-CDS-H-paniculata_contig29623:500..6981622929904.1093812-CDS-H-paniculata_contig29623:500..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29623 501..698 -
1691481062.878992-CDS-H-paniculata_contig29623:500..6981691481062.878992-CDS-H-paniculata_contig29623:500..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29623 501..698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29623.8050.1prot_H-paniculata_contig29623.8050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29623 501..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29623.8050.1

>prot_H-paniculata_contig29623.8050.1 ID=prot_H-paniculata_contig29623.8050.1|Name=mRNA_H-paniculata_contig29623.8050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
PYFAPEQLTRDPEYTTKVDVWATGVVAFEIMHGFTPFRYVSGCAHDVISY
VSLYLSEHVFGRRTFH
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mRNA from alignment at H-paniculata_contig29623:501..698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29623.8050.1 ID=mRNA_H-paniculata_contig29623.8050.1|Name=mRNA_H-paniculata_contig29623.8050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig29623:501..698- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTATTTCGCGCCGGAGCAGCTGACACGCGACCCCGAGTACACCACAAA
GGTCGACGTGTGGGCAACAGGCGTTGTGGCGTTCGAAATCATGCACGGTT
TCACGCCCTTCAGGTATGTATCCGGTTGTGCGCACGATGTGATTAGTTAT
GTTTCACTGTACCTAAGTGAGCACGTCTTTGGGAGACGGACATTCCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29623:501..698-

>mRNA_H-paniculata_contig29623.8050.1 ID=mRNA_H-paniculata_contig29623.8050.1|Name=mRNA_H-paniculata_contig29623.8050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig29623:501..698- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTATTTCGCGCCGGAGCAGCTGACACGCGACCCCGAGTACACCACAAA
GGTCGACGTGTGGGCAACAGGCGTTGTGGCGTTCGAAATCATGCACGGTT
TCACGCCCTTCAGGTATGTATCCGGTTGTGCGCACGATGTGATTAGTTAT
GTTTCACTGTACCTAAGTGAGCACGTCTTTGGGAGACGGACATTCCATCC
GTATTTCGCGCCGGAGCAGCTGACACGCGACCCCGAGTACACCACAAAGG
TCGACGTGTGGGCAACAGGCGTTGTGGCGTTCGAAATCATGCACGGTTTC
ACGCCCTTCAGGTATGTATCCGGTTGTGCGCACGATGTGATTAGTTATGT
TTCACTGTACCTAAGTGAGCACGTCTTTGGGAGACGGACATTCCAT
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