mRNA_H-paniculata_contig29621.8049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29621.8049.1
Unique NamemRNA_H-paniculata_contig29621.8049.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29621.8049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29621contigH-paniculata_contig29621:2139..2706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.0464115-UTR-H-paniculata_contig29621:2138..23611622929904.0464115-UTR-H-paniculata_contig29621:2138..2361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29621 2139..2361 +
1691481062.8603778-UTR-H-paniculata_contig29621:2138..23611691481062.8603778-UTR-H-paniculata_contig29621:2138..2361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29621 2139..2361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.0598521-CDS-H-paniculata_contig29621:2361..27061622929904.0598521-CDS-H-paniculata_contig29621:2361..2706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29621 2362..2706 +
1691481062.8698425-CDS-H-paniculata_contig29621:2361..27061691481062.8698425-CDS-H-paniculata_contig29621:2361..2706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29621 2362..2706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29621.8049.1prot_H-paniculata_contig29621.8049.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29621 2362..2706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29621.8049.1

>prot_H-paniculata_contig29621.8049.1 ID=prot_H-paniculata_contig29621.8049.1|Name=mRNA_H-paniculata_contig29621.8049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MSIAATMPCSEVIIDVREPNVWYTHSTIPSSPPSFPMRTLQLHYRCRRCT
RSPRHSYSQEQTFLTLEAKHVNRSSMYALLHIFIYQYNKPRFYFNALFFF
TKRNAKNPTKVKMRP
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mRNA from alignment at H-paniculata_contig29621:2139..2706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29621.8049.1 ID=mRNA_H-paniculata_contig29621.8049.1|Name=mRNA_H-paniculata_contig29621.8049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=568bp|location=Sequence derived from alignment at H-paniculata_contig29621:2139..2706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTAGTTATTTGGATCAAGTAGGTACATAGGAGTACACTACTAGACGA
AAGATTACCATAGTTCGACCACAAATAAAGGGCCACAGGATATCCCCGAG
TCGCGCTGAAGGGTTCATCATCCCCAGTTATACGGGAATGTGTGATCGGG
GACGGGGGGTCACGAAAACAGAACCTTTCAAGATAAATAGAGCAAAAATG
ACCATATTCGTCCCAATCGCTATATGAGTATTGCTGCGACAATGCCCTGC
TCTGAGGTCATTATCGACGTACGTGAACCTAATGTATGGTATACCCACTC
AACCATCCCTTCTTCCCCCCCGTCCTTTCCCATGAGAACTCTCCAGCTAC
ACTATAGATGCAGGCGATGTACCCGTTCCCCACGTCACTCCTACAGCCAA
GAGCAAACGTTTCTTACACTTGAAGCAAAACACGTGAACCGCAGCAGTAT
GTACGCTCTACTTCATATATTCATTTATCAATACAACAAGCCGAGATTTT
ATTTCAACGCTCTCTTTTTCTTCACAAAACGAAACGCAAAAAACCCAACA
AAAGTCAAAATGCGACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig29621:2139..2706+

>mRNA_H-paniculata_contig29621.8049.1 ID=mRNA_H-paniculata_contig29621.8049.1|Name=mRNA_H-paniculata_contig29621.8049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig29621:2139..2706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTATTGCTGCGACAATGCCCTGCTCTGAGGTCATTATCGACGTACG
TGAACCTAATGTATGGTATACCCACTCAACCATCCCTTCTTCCCCCCCGT
CCTTTCCCATGAGAACTCTCCAGCTACACTATAGATGCAGGCGATGTACC
CGTTCCCCACGTCACTCCTACAGCCAAGAGCAAACGTTTCTTACACTTGA
AGCAAAACACGTGAACCGCAGCAGTATGTACGCTCTACTTCATATATTCA
TTTATCAATACAACAAGCCGAGATTTTATTTCAACGCTCTCTTTTTCTTC
ACAAAACGAAACGCAAAAAACCCAACAAAAGTCAAAATGCGACCCATGAG
TATTGCTGCGACAATGCCCTGCTCTGAGGTCATTATCGACGTACGTGAAC
CTAATGTATGGTATACCCACTCAACCATCCCTTCTTCCCCCCCGTCCTTT
CCCATGAGAACTCTCCAGCTACACTATAGATGCAGGCGATGTACCCGTTC
CCCACGTCACTCCTACAGCCAAGAGCAAACGTTTCTTACACTTGAAGCAA
AACACGTGAACCGCAGCAGTATGTACGCTCTACTTCATATATTCATTTAT
CAATACAACAAGCCGAGATTTTATTTCAACGCTCTCTTTTTCTTCACAAA
ACGAAACGCAAAAAACCCAACAAAAGTCAAAATGCGACCC
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