mRNA_H-paniculata_contig29619.8048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29619.8048.1
Unique NamemRNA_H-paniculata_contig29619.8048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.930e-27
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 QGFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            +G   K++ KMGF GRLGK EDGVTRQLEVKVRPG SGLGFG FKEATTLKVNREIEADR+G T+EQM+
Sbjct:  364 KGIGKKLLMKMGFKGRLGKNEDGVTRQLEVKVRPGLSGLGFGNFKEATTLKVNREIEADRQGKTLEQME 432
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A835YJI3_9STRA (G-patch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.390e-26
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 QGFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            +G   K+M KMGFTGRLGK E GVTRQLEVKVRPG  GLGFG FKEATTL+VNREIEADR+G T+E+++
Sbjct:  191 KGIGLKLMQKMGFTGRLGKHETGVTRQLEVKVRPGGIGLGFGNFKEATTLRVNREIEADRQGKTLEELE 259
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A7S3YFE6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFE6_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-21
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 QGFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            +G   K++AKMGF GRLGK+E GVTR  E KVRPG  GLG+G FKE+T L+ NREIEAD +G T+EQ++
Sbjct:   50 KGIGMKLLAKMGFKGRLGKEETGVTRVQEAKVRPGAIGLGYGKFKESTMLRGNREIEADLQGKTLEQLN 118
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A7S1U3U4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3U4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.050e-20
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEAD 177
            GF SKM+AKMGF GRLGK+E GV+R LEVKVRPGQ G+GFGGFKEA+ LK N++IE +
Sbjct:   40 GFGSKMLAKMGFKGRLGKEEQGVSRHLEVKVRPGQMGIGFGGFKEASQLKANKQIERE 97
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A8K1CGV0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGV0_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 2.990e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 QGFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            +GF  KMMAKMGFTGRLGK E GV+  LEV  RP Q GLGFG FKEA+TLK N+ +E + +G T ++ +
Sbjct:  109 KGFGMKMMAKMGFTGRLGKDEKGVSTTLEVVQRPAQMGLGFGDFKEASTLKQNKRVEKELKGETYDEKE 177
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A225X140_9STRA (STIP-like protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X140_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.570e-18
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            GF +KM+AKMGF GRLGK+EDGV+  +EVK+RP Q G+G+G F EA+ LK NR+++ + +G TVE+ +
Sbjct:  123 GFGTKMLAKMGFKGRLGKKEDGVSATIEVKMRPAQMGMGYGDFVEASNLKQNRKLQKELKGDTVEERE 190
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A3M6VP37_9STRA (G-patch domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP37_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.420e-17
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQ 201
            GF SKM+AKMGF GRLGK+EDGV+  +EVK RP Q G+G+G F EA+ LK NR+++ + +G  VEQ
Sbjct:  139 GFGSKMLAKMGFKGRLGKKEDGVSATIEVKKRPAQMGMGYGDFVEASNLKQNRKLQKELKGEIVEQ 204
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: A0A2P4YQS2_9STRA (STIP-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQS2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.930e-17
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQ 201
            GF +KM+AKMGF GRLGK+EDGV+  +EVK RP Q G+G+G F EA+ LK NR+++ + +G +VEQ
Sbjct:  132 GFGTKMLAKMGFKGRLGKKEDGVSATIEVKKRPAQMGMGYGDFVEASNLKQNRKLQKELKGESVEQ 197
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: D0N2T4_PHYIT (STIP-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2T4_PHYIT)

HSP 1 Score: 84.3 bits (207), Expect = 1.940e-17
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVEQMD 207
            GF +KM+AKMGF GRLGK+EDGV+  +EVK RP Q G+G+G F EA+ LK NR+++ + +G TVE  D
Sbjct:  109 GFGTKMLAKMGFKGRLGKKEDGVSATIEVKKRPTQMGMGYGDFVEASNLKQNRKLQKELKGETVEDDD 176
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BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Match: G4YWT9_PHYSP (G-patch domain-containing protein n=2 Tax=Phytophthora sojae TaxID=67593 RepID=G4YWT9_PHYSP)

HSP 1 Score: 84.0 bits (206), Expect = 2.650e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 GFASKMMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREIEADRRGMTVE 198
            GF +KM+AKMGF GRLGK+EDGV+  + VK+RP Q G+GFG F EA+ LK NR+++ + +G TVE
Sbjct:  132 GFGTKMLAKMGFKGRLGKKEDGVSATIAVKMRPAQMGIGFGDFVEASNLKQNRKLQKELKGETVE 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29619.8048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQD4_ECTSI1.930e-2778.26G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YJI3_9STRA3.390e-2673.91G-patch domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3YFE6_HETAK1.100e-2162.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1U3U4_9STRA2.050e-2072.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CGV0_PYTOL2.990e-1859.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225X140_9STRA5.570e-1855.88STIP-like protein n=1 Tax=Phytophthora megakarya T... [more]
A0A3M6VP37_9STRA1.420e-1759.09G-patch domain-containing protein n=1 Tax=Peronosp... [more]
A0A2P4YQS2_9STRA1.930e-1757.58STIP-like protein n=1 Tax=Phytophthora palmivora v... [more]
D0N2T4_PHYIT1.940e-1757.35STIP-like protein n=2 Tax=Phytophthora infestans T... [more]
G4YWT9_PHYSP2.650e-1758.46G-patch domain-containing protein n=2 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29619contigH-paniculata_contig29619:119..1148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
KEGG koko:K13103
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons2
Model size207
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29619.8048.1prot_H-paniculata_contig29619.8048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29619 137..1148 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.9729638-UTR-H-paniculata_contig29619:118..1361622929903.9729638-UTR-H-paniculata_contig29619:118..136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29619 119..136 +
1691481062.8278651-UTR-H-paniculata_contig29619:118..1361691481062.8278651-UTR-H-paniculata_contig29619:118..136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29619 119..136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.9903367-CDS-H-paniculata_contig29619:136..2711622929903.9903367-CDS-H-paniculata_contig29619:136..271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29619 137..271 +
1691481062.8388011-CDS-H-paniculata_contig29619:136..2711691481062.8388011-CDS-H-paniculata_contig29619:136..271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29619 137..271 +
1622929904.0077772-CDS-H-paniculata_contig29619:1094..11481622929904.0077772-CDS-H-paniculata_contig29619:1094..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29619 1095..1148 +
1691481062.8480363-CDS-H-paniculata_contig29619:1094..11481691481062.8480363-CDS-H-paniculata_contig29619:1094..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29619 1095..1148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29619.8048.1

>prot_H-paniculata_contig29619.8048.1 ID=prot_H-paniculata_contig29619.8048.1|Name=mRNA_H-paniculata_contig29619.8048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MMAKMGFTGRLGKQEDGVTRQLEVKVRPGQSGLGFGGFKEATTLKVNREI
EADRRGMTVEQMD
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mRNA from alignment at H-paniculata_contig29619:119..1148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29619.8048.1 ID=mRNA_H-paniculata_contig29619.8048.1|Name=mRNA_H-paniculata_contig29619.8048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-paniculata_contig29619:119..1148+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCTTCGCCTCGAAGATGATGGCCAAGATGGGCTTCACGGGCAGGCT
GGGAAAGCAAGAAGACGGTGTGACGCGGCAATTAGAAGTAAAGGTTCGGC
CTGGCCAGTCGGGGCTGGGGTTCGGCGGATTCAAGGAAGCAACCACGCTC
AAGGTCGGTGTGTGTGTATATACACTGTGATGTTCAACTTCTGCGGCGGT
TTTTGTACGTTGTATGATGTGTATGTATCTATTCCAAAAAAAAAAATCCA
ACGCGTACGTACGACAGAACGAGAACGGAATCGGATCAACGTGTTCTGAA
GTAATAGATGTTCGGCATAATATGTCGAAAAAATGTATTTTTTTAGAAGG
AGGCGTGTTCTTTTCTGCAATAATCGATCCACCCACAATGTTTTGGGGGG
CTGTGGTTGTAAAACATATACGGCGGATTATGGGGAATAACATAATAACA
AGTAATCCAGCAAGTTGAAAAGTGCTGGGCATACGTCCATTTTGTTTTTA
CGTTTTTTTTTGTCATGGTTTATACCCTTGGTGGTAATATTGTGCGACTG
TCTGCTTCTACTTTTGACTCGCTATTTACTTGACAGCACTTTTTCCAAAC
CGTATTCTCAACGTGTAAATGCCGTCGTCCTGCTGGTGAAGCTGCCCCTG
GCAATTGATCTGTTGTGGTGATAAGCGTACCCAACTTGGTGGTGGGTGAG
GAGTCTATCCGAACTTCCATATTCCCTGTGCATATCTGACCGTGAGTGGA
TTGGGGCGGGGTCTACCTGCGATGAACGCTCACGTTGATGATATACGTAT
CATGTACTAATCACGTAAGATGGAGATCGGCCGAGCTAGAACTGGCATAC
AGAAGTATCAGAAAAGAGGTTGTCGGCGTGATCTTGTTGGGAGCTAACCC
TTCCCCTACCGGACCGAAAACTGGAGTACGACGAAATGAGTAACCCTAAT
CCCGACCCTTGGGTGGCGACGTGAAGGTAAATCGGGAGATAGAGGCTGAT
CGTCGAGGCATGACTGTGGAGCAAATGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29619:119..1148+

>mRNA_H-paniculata_contig29619.8048.1 ID=mRNA_H-paniculata_contig29619.8048.1|Name=mRNA_H-paniculata_contig29619.8048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig29619:119..1148+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCCAAGATGGGCTTCACGGGCAGGCTGGGAAAGCAAGAAGACGG
TGTGACGCGGCAATTAGAAGTAAAGGTTCGGCCTGGCCAGTCGGGGCTGG
GGTTCGGCGGATTCAAGGAAGCAACCACGCTCAAGATGATGGCCAAGATG
GGCTTCACGGGCAGGCTGGGAAAGCAAGAAGACGGTGTGACGCGGCAATT
AGAAGTAAAGGTTCGGCCTGGCCAGTCGGGGCTGGGGTTCGGCGGATTCA
AGGAAGCAACCACGCTCAAGGTAAATCGGGAGATAGAGGCTGATCGTCGA
GGCATGACTGTGGAGCAAATGGATGTAAATCGGGAGATAGAGGCTGATCG
TCGAGGCATGACTGTGGAGCAAATGGAT
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